jgi.p|Nanoce1779_2|637532, mRNA_2644 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|637532
Unique NamemRNA_2644
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length582
Alignment locationscaffold_5:835771..837256 -

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Properties
Property NameValue
TranscriptId637618
TrackFilteredModels2
ProteinId637532
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:835771..837256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637532gene_2644Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637532mRNA_2644-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2644CDS_2644Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2644 ID=mRNA_2644|Name=jgi.p|Nanoce1779_2|637532|organism=Nannochloropsis oceanica|type=mRNA|length=582bp
ATGGCATTAGCCCCGTCCTCGTTGATGATGATCGGGGCTGGGACGTTATC
CACAGCGTTGTTTGCGCCAGTGGAGACGGTGCATGCTGCTGCTGGGGCGG
ATGAGGTGGGGACAGACACGGATTTTAAGATAAAGAGGGGCGCAGCCTCG
ACTCTGAACCAGGGGATTGTCAAGACCATGACTCGGGGCGTTAATATCGA
GAATGCAAATTTTGAGGGGAAAGACCTGACGGGCGTGAGCTTTCAGCAGT
CCTTGGTGCGCGCCGGGAACTTCCGTGGGTCCAAGTGTTTCACTGCCTCC
TTCTTCGACGCCGACCTGTCTAACGCGGACTTCACGGGCGCGAACATGGA
TCAAGTCAACCTGGAATTGGCCAACTTGAAAGGCGCCATTCTGAAGGATG
CACTGGTCCGTGAAGCTTACGTGTCAGGGACGACAAGATTGACGGGAGTC
GAAATCGAAGGCAGTGATTGGTCGGGCACCTTCCTGCGCAAGGACCAGCA
GCAATACTTGTGCAATCGGGCCAGTGGTGTGAACCCCATCACTAAAATCT
CGACCAAAGAGAGCTTAATGTGCCCGGAATAG
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protein sequence of jgi.p|Nanoce1779_2|637532

>mRNA_2644-protein ID=mRNA_2644-protein|Name=jgi.p|Nanoce1779_2|637532|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MALAPSSLMMIGAGTLSTALFAPVETVHAAAGADEVGTDTDFKIKRGAAS
TLNQGIVKTMTRGVNIENANFEGKDLTGVSFQQSLVRAGNFRGSKCFTAS
FFDADLSNADFTGANMDQVNLELANLKGAILKDALVREAYVSGTTRLTGV
EIEGSDWSGTFLRKDQQQYLCNRASGVNPITKISTKESLMCPE*
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mRNA from alignment at scaffold_5:835771..837256-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2644 ID=mRNA_2644|Name=jgi.p|Nanoce1779_2|637532|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp|location=Sequence derived from alignment at scaffold_5:835771..837256- (Nannochloropsis oceanica)
ATGGCATTAGCCCCGTCCTCGTTGATGATGATCGGGGCTGGGACGTTATC
CACAGCGTTGTTTGCGCCAGTGGAGACGGTGCATGCTGCTGCTGGGGCGG
ATGAGGTGGGGACAGACACGGATTTTAAGGTAAGCGTGCGGGAGGAGTGA
GGTTGGGAGATAGAGCAGGGAGAGGAAAGGAGGGGGGACACTTTTCTAGA
GCGTTAAATGGGAACATATTGGAATGGAAACGTCAAGCTGGCGCATGAAG
AGAGATACACTCACTTACAGTTAATTCACCCACGTCTATATCACGCGTGC
ACAGATAAAGAGGGGCGCAGCCTCGACTCTGAACCAGGGGATTGTCAAGA
CCATGACTCGGGGCGTTAATATCGAGAATGCAAATTTTGAGGGGAAAGAC
CTGACGGTATGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGGGGAAGGGCC
TGCGGGCGAGGAGCAAGAGAAGGTCGTTCTGGAATTTCTTCCCTTCTTTT
CTCCTCTTCGTTCTCCTCCTCCTCATCACTACCCTCCTCTTCCTGCTTCC
AATCATTATTCCTTTATGTGCATTCAGCATCACTCATCGCAACTACTTGT
TGCTCACCATTTACCCCTCAGGGCGTGAGCTTTCAGCAGTCCTTGGTGCG
CGCCGGGAACTTCCGTGGGTCCAAGTGTTTCACTGCCTCCTTCTTCGACG
CCGACCTGTCTAGTAAGTGCCATGGAAGGGTAGGGTATTAGGCCTTTCCA
CACCTTCCTGGCCTCCCCACTTAATTTCTTCCTCCTCCCTCTCTTTCCTC
CCTCCCTCTTTCCCTCCCTCCCTCCCTAACTTGGTTTAGACGCGGACTTC
ACGGGCGCGAACATGGATCAAGTCAACCTGGAATTGGCCAACTTGAAAGG
CGCCATTCTGAAGGATGCACTGGTCCGTGAAGCTTACGTGTCAGGGACGA
CAAGATTGACGGGTAGGATGGGGGGAAGGAAGGGCGGGAGAGGAAGGTGT
GTGTGGACAAGACGCGTTGGTTTGCTGCCCAGGAGGGGGAATGGGAGAGA
CTGAGCGTGTCGAAGTCTATTCTTTGGCGGACATATCATCTGTCGGGGAT
ACTGTTGGGCCTGTGACTCAATGGCATGTACCATGCGTGCTCCACTCCCT
CGCCACGTCCTCTTCCCCTGGCCCCATTAGGGAGTGAAGTTGTGGACCAA
TGACACATCAAGTATGCACTGGACAAATGTTTTCTTCATAACTGGCATGG
CAGCCATAGAGGAGGCCTCTTCTCGTGCGCTCTGAGCGTTTCTATGAACC
TGACTTGCACTCCCTCTCACATCATTCCCTCCCACCCCACACCGAACAGG
AGTCGAAATCGAAGGCAGTGATTGGTCGGGCACCTTCCTGCGCAAGGACC
AGCAGCAATACTTGTGCAATCGGGCCAGTGGTGTGAACCCCATCACTAAA
ATCTCGACCAAAGAGAGCTTAATGTGCCCGGAATAG
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Coding sequence (CDS) from alignment at scaffold_5:835771..837256-

>mRNA_2644 ID=mRNA_2644|Name=jgi.p|Nanoce1779_2|637532|organism=Nannochloropsis oceanica|type=CDS|length=2910bp|location=Sequence derived from alignment at scaffold_5:835771..837256- (Nannochloropsis oceanica)
GAGTCGAAATCGAAGGCAGTGATTGGTCGGGCACCTTCCTGCGCAAGGAC
CAGCAGCAATACTTGTGCAATCGGGCCAGTGGTGTGAACCCCATCACTAA
AATCTCGACCAAAGAGAGCTTAATGTGCCCGGAATAGACGCGGACTTCAC
GGGCGCGAACATGGATCAAGTCAACCTGGAATTGGCCAACTTGAAAGGCG
CCATTCTGAAGGATGCACTGGTCCGTGAAGCTTACGTGTCAGGGACGACA
AGATTGACGGGGCGTGAGCTTTCAGCAGTCCTTGGTGCGCGCCGGGAACT
TCCGTGGGTCCAAGTGTTTCACTGCCTCCTTCTTCGACGCCGACCTGTCT
AATAAAGAGGGGCGCAGCCTCGACTCTGAACCAGGGGATTGTCAAGACCA
TGACTCGGGGCGTTAATATCGAGAATGCAAATTTTGAGGGGAAAGACCTG
ACGATGGCATTAGCCCCGTCCTCGTTGATGATGATCGGGGCTGGGACGTT
ATCCACAGCGTTGTTTGCGCCAGTGGAGACGGTGCATGCTGCTGCTGGGG
CGGATGAGGTGGGGACAGACACGGATTTTAAGGAGTCGAAATCGAAGGCA
GTGATTGGTCGGGCACCTTCCTGCGCAAGGACCAGCAGCAATACTTGTGC
AATCGGGCCAGTGGTGTGAACCCCATCACTAAAATCTCGACCAAAGAGAG
CTTAATGTGCCCGGAATAGACGCGGACTTCACGGGCGCGAACATGGATCA
AGTCAACCTGGAATTGGCCAACTTGAAAGGCGCCATTCTGAAGGATGCAC
TGGTCCGTGAAGCTTACGTGTCAGGGACGACAAGATTGACGGGGCGTGAG
CTTTCAGCAGTCCTTGGTGCGCGCCGGGAACTTCCGTGGGTCCAAGTGTT
TCACTGCCTCCTTCTTCGACGCCGACCTGTCTAATAAAGAGGGGCGCAGC
CTCGACTCTGAACCAGGGGATTGTCAAGACCATGACTCGGGGCGTTAATA
TCGAGAATGCAAATTTTGAGGGGAAAGACCTGACGATGGCATTAGCCCCG
TCCTCGTTGATGATGATCGGGGCTGGGACGTTATCCACAGCGTTGTTTGC
GCCAGTGGAGACGGTGCATGCTGCTGCTGGGGCGGATGAGGTGGGGACAG
ACACGGATTTTAAGGAGTCGAAATCGAAGGCAGTGATTGGTCGGGCACCT
TCCTGCGCAAGGACCAGCAGCAATACTTGTGCAATCGGGCCAGTGGTGTG
AACCCCATCACTAAAATCTCGACCAAAGAGAGCTTAATGTGCCCGGAATA
GACGCGGACTTCACGGGCGCGAACATGGATCAAGTCAACCTGGAATTGGC
CAACTTGAAAGGCGCCATTCTGAAGGATGCACTGGTCCGTGAAGCTTACG
TGTCAGGGACGACAAGATTGACGGGGCGTGAGCTTTCAGCAGTCCTTGGT
GCGCGCCGGGAACTTCCGTGGGTCCAAGTGTTTCACTGCCTCCTTCTTCG
ACGCCGACCTGTCTAATAAAGAGGGGCGCAGCCTCGACTCTGAACCAGGG
GATTGTCAAGACCATGACTCGGGGCGTTAATATCGAGAATGCAAATTTTG
AGGGGAAAGACCTGACGATGGCATTAGCCCCGTCCTCGTTGATGATGATC
GGGGCTGGGACGTTATCCACAGCGTTGTTTGCGCCAGTGGAGACGGTGCA
TGCTGCTGCTGGGGCGGATGAGGTGGGGACAGACACGGATTTTAAGGAGT
CGAAATCGAAGGCAGTGATTGGTCGGGCACCTTCCTGCGCAAGGACCAGC
AGCAATACTTGTGCAATCGGGCCAGTGGTGTGAACCCCATCACTAAAATC
TCGACCAAAGAGAGCTTAATGTGCCCGGAATAGACGCGGACTTCACGGGC
GCGAACATGGATCAAGTCAACCTGGAATTGGCCAACTTGAAAGGCGCCAT
TCTGAAGGATGCACTGGTCCGTGAAGCTTACGTGTCAGGGACGACAAGAT
TGACGGGGCGTGAGCTTTCAGCAGTCCTTGGTGCGCGCCGGGAACTTCCG
TGGGTCCAAGTGTTTCACTGCCTCCTTCTTCGACGCCGACCTGTCTAATA
AAGAGGGGCGCAGCCTCGACTCTGAACCAGGGGATTGTCAAGACCATGAC
TCGGGGCGTTAATATCGAGAATGCAAATTTTGAGGGGAAAGACCTGACGA
TGGCATTAGCCCCGTCCTCGTTGATGATGATCGGGGCTGGGACGTTATCC
ACAGCGTTGTTTGCGCCAGTGGAGACGGTGCATGCTGCTGCTGGGGCGGA
TGAGGTGGGGACAGACACGGATTTTAAGGAGTCGAAATCGAAGGCAGTGA
TTGGTCGGGCACCTTCCTGCGCAAGGACCAGCAGCAATACTTGTGCAATC
GGGCCAGTGGTGTGAACCCCATCACTAAAATCTCGACCAAAGAGAGCTTA
ATGTGCCCGGAATAGACGCGGACTTCACGGGCGCGAACATGGATCAAGTC
AACCTGGAATTGGCCAACTTGAAAGGCGCCATTCTGAAGGATGCACTGGT
CCGTGAAGCTTACGTGTCAGGGACGACAAGATTGACGGGGCGTGAGCTTT
CAGCAGTCCTTGGTGCGCGCCGGGAACTTCCGTGGGTCCAAGTGTTTCAC
TGCCTCCTTCTTCGACGCCGACCTGTCTAATAAAGAGGGGCGCAGCCTCG
ACTCTGAACCAGGGGATTGTCAAGACCATGACTCGGGGCGTTAATATCGA
GAATGCAAATTTTGAGGGGAAAGACCTGACGATGGCATTAGCCCCGTCCT
CGTTGATGATGATCGGGGCTGGGACGTTATCCACAGCGTTGTTTGCGCCA
GTGGAGACGGTGCATGCTGCTGCTGGGGCGGATGAGGTGGGGACAGACAC
GGATTTTAAG
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Synonyms
Publications