jgi.p|Nanoce1779_2|581031, mRNA_2643 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581031
Unique NamemRNA_2643
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1434
Alignment locationscaffold_5:832512..834114 -

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Properties
Property NameValue
TranscriptId581117
TrackFilteredModels2
ProteinId581031
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:832512..834114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581031gene_2643Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581031mRNA_2643-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2643CDS_2643Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2643 ID=mRNA_2643|Name=jgi.p|Nanoce1779_2|581031|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp
CAGAGAGCCCCAGTCCAACGTGCATGCTGCCGGCGCATTGGCAATCAGGA
GCACCACAACCGCAACGCTACAAGCCGTGGACCAGCATGTCTTCCCAGCA
GCAGCAGCAGCCCACCCGTCTGCAGGAGACGCTGGGCAAAATCCCCTTGT
GCACCACGCTGATCACGCTCCTCTGCTTGATCCTGCAACTTTGCGTTGTT
TTCCTCAATTGGAATCTGAATGAATACTCCATCTCGCCTGCTGCCGTCGT
TTACGATCGCGAGTACTACCGGCTCATCACGAGCGCGTATTTCCACCTGG
GGTTCTTTCATATCGCTATGAATATGCTTTCCTTCGTGGGGATTGGTGCG
TGGTTGGAGATCAAGATGGGGACCCTCTATTTCTTCCTAACAATTCTGTT
TTCCACGGTCTTGACCAATGGATTGTATATTGGCATTTGCTTCTTTTTAG
CCGCCATTACTCACAGAGATCAATGGCTTTTTTACTCAAGCATTGGCTTC
TCCGGCGTCATTTTCACGCTCGCCGTCCTCGAGTCCCACTCCTCCCCACC
CAATGCCACCCGCTCCATCATGGGCATGTGCCAGGTCCCTTCCCGCGCGT
ACCCTTGGGTGCTTCTAATCATCATCCAGCTAATGCTTCCACACATTTCC
TTTGTCGGCCACCTTTCGGGCCTCCTGGTCGGAATCTTGCAATCGTACGG
ATGCATTGCCTTCCTTTTCCCTTCTGCGGCACTGCTGAATAAATTGGAGG
GAAGTTCCGCTTGTGCGTGTTTGACGCGGTTTCCTCAGTATATCCTATGT
CCGGACCAGGCGGATCATATATTGCCGAGGGGATCGGACGTGTTGCAGTG
TTGTGCTTGTATGAGGAGTGGCAGTCCCCGCCGATTTACGGGGAGTGGAG
TCTCTGGAACCGCGGCAGGGAACGCTGCTGCTGCTACTAATGCTTCCTCG
TCCTCGTCCTCGCCCTTGCCCACCACGGTGCAGAATGCCGGCAGGAACAG
TGCTGCAACCGCTGGAAGAGGACTGGCACAGGCATCGCCCACCCGACCGG
GAGGGAGAGGGATGGGCGGTTGGAGTCGGTTGGGTGAGGGAGGGAATGGA
GGAGGGGAAGAGGTGGAGATTGTGTACGATGGGAATCAACTTAATAACAC
TCCGAGGCAAATAGTATTGTAAATTGTGAATGAAAAAAGGAGAAGGCGGG
AGGGCGATGACAAGGCGTTCAAAAAGGGGGCGAGGGCCCGTGACTTGGGA
AGAGAGAATAGAGAGAAAACATCGTTTGTGTGTAATGAGGTGGAGAGAGG
TGCTAATTTGCAGAGCCAGCACCGAACAATAGCAAGGAAAATCATACACA
CATAAGGGGAATAGAATTTAAGAAAGGGTCTAATTCAACAGTACCACGCG
CAAAGCCACAAACAACATAAAATCTGTATGGTGA
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protein sequence of jgi.p|Nanoce1779_2|581031

>mRNA_2643-protein ID=mRNA_2643-protein|Name=jgi.p|Nanoce1779_2|581031|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MLPAHWQSGAPQPQRYKPWTSMSSQQQQQPTRLQETLGKIPLCTTLITLL
CLILQLCVVFLNWNLNEYSISPAAVVYDREYYRLITSAYFHLGFFHIAMN
MLSFVGIGAWLEIKMGTLYFFLTILFSTVLTNGLYIGICFFLAAITHRDQ
WLFYSSIGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPSRAYPWVLLII
IQLMLPHISFVGHLSGLLVGILQSYGCIAFLFPSAALLNKLEGSSACACL
TRFPQYILCPDQADHILPRGSDVLQCCACMRSGSPRRFTGSGVSGTAAGN
AAAATNASSSSSSPLPTTVQNAGRNSAATAGRGLAQASPTRPGGRGMGGW
SRLGEGGNGGGEEVEIVYDGNQLNNTPRQIVL*
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mRNA from alignment at scaffold_5:832512..834114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2643 ID=mRNA_2643|Name=jgi.p|Nanoce1779_2|581031|organism=Nannochloropsis oceanica|type=mRNA|length=1603bp|location=Sequence derived from alignment at scaffold_5:832512..834114- (Nannochloropsis oceanica)
CAGAGAGCCCCAGTCCAACGTGCATGCTGCCGGCGCATTGGCAATCAGGA
GCACCACAACCGCAACGCTACAAGCCGTGGACCAGCATGTCTTCCCAGCA
GCAGCAGCAGCCCACCCGTCTGCAGGAGACGCTGGGCAAAATCCCCTTGT
GCACCACGCTGATCACGCTCCTCTGCTTGATCCTGCAACTTTGCGTTGTT
TTCCTCAATTGGAATCTGAATGAATACTCCATCTCGCCTGCTGCCGTCGT
TTACGATCGCGAGTACTACCGGCTCATCACGAGCGCGTATTTCCACCTGG
GGTTCTTTCATATCGCTATGAATATGCTTTCCTTCGTGGGGATTGGTGCG
TGGTTGGAGATCAAGATGGGGACCCTCTATTTCTTCCTAACAATTCTGTT
TTCCACGGTCTTGACCAATGGATTGTATATTGGCATTTGCTTCTTTTTAG
GTGCGTAAAGAGAACAAAAGATGAATATGTAAAAGGCAAGAAGAATGGCT
GGGCGAAGAGATCGAATGACTCGGACAGAGGGTTCGATGGAGAGTCTGGT
TGCCCAGGAGGAGACTTTTCTTACGCCTATCCGCCCCTCAACCCCCCCCT
CCCCTCCCGGCACACACAGCCGCCATTACTCACAGAGATCAATGGCTTTT
TTACTCAAGCATTGGCTTCTCCGGCGTCATTTTCACGCTCGCCGTCCTCG
AGTCCCACTCCTCCCCACCCAATGCCACCCGCTCCATCATGGGCATGTGC
CAGGTCCCTTCCCGCGCGTACCCTTGGGTGCTTCTAATCATCATCCAGCT
AATGCTTCCACACATTTCCTTTGTCGGCCACCTTTCGGGCCTCCTGGTCG
GAATCTTGCAATCGTACGGATGCATTGCCTTCCTTTTCCCTTCTGCGGCA
CTGCTGAATAAATTGGAGGGAAGTTCCGCTTGTGCGTGTTTGACGCGGTT
TCCTCAGTATATCCTATGTCCGGACCAGGCGGATCATATATTGCCGAGGG
GATCGGACGTGTTGCAGTGTTGTGCTTGTATGAGGAGTGGCAGTCCCCGC
CGATTTACGGGGAGTGGAGTCTCTGGAACCGCGGCAGGGAACGCTGCTGC
TGCTACTAATGCTTCCTCGTCCTCGTCCTCGCCCTTGCCCACCACGGTGC
AGAATGCCGGCAGGAACAGTGCTGCAACCGCTGGAAGAGGACTGGCACAG
GCATCGCCCACCCGACCGGGAGGGAGAGGGATGGGCGGTTGGAGTCGGTT
GGGTGAGGGAGGGAATGGAGGAGGGGAAGAGGTGGAGATTGTGTACGATG
GGAATCAACTTAATAACACTCCGAGGCAAATAGTATTGTAAATTGTGAAT
GAAAAAAGGAGAAGGCGGGAGGGCGATGACAAGGCGTTCAAAAAGGGGGC
GAGGGCCCGTGACTTGGGAAGAGAGAATAGAGAGAAAACATCGTTTGTGT
GTAATGAGGTGGAGAGAGGTGCTAATTTGCAGAGCCAGCACCGAACAATA
GCAAGGAAAATCATACACACATAAGGGGAATAGAATTTAAGAAAGGGTCT
AATTCAACAGTACCACGCGCAAAGCCACAAACAACATAAAATCTGTATGG
TGA
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Coding sequence (CDS) from alignment at scaffold_5:832512..834114-

>mRNA_2643 ID=mRNA_2643|Name=jgi.p|Nanoce1779_2|581031|organism=Nannochloropsis oceanica|type=CDS|length=2298bp|location=Sequence derived from alignment at scaffold_5:832512..834114- (Nannochloropsis oceanica)
CCGCCATTACTCACAGAGATCAATGGCTTTTTTACTCAAGCATTGGCTTC
TCCGGCGTCATTTTCACGCTCGCCGTCCTCGAGTCCCACTCCTCCCCACC
CAATGCCACCCGCTCCATCATGGGCATGTGCCAGGTCCCTTCCCGCGCGT
ACCCTTGGGTGCTTCTAATCATCATCCAGCTAATGCTTCCACACATTTCC
TTTGTCGGCCACCTTTCGGGCCTCCTGGTCGGAATCTTGCAATCGTACGG
ATGCATTGCCTTCCTTTTCCCTTCTGCGGCACTGCTGAATAAATTGGAGG
GAAGTTCCGCTTGTGCGTGTTTGACGCGGTTTCCTCAGTATATCCTATGT
CCGGACCAGGCGGATCATATATTGCCGAGGGGATCGGACGTGTTGCAGTG
TTGTGCTTGTATGAGGAGTGGCAGTCCCCGCCGATTTACGGGGAGTGGAG
TCTCTGGAACCGCGGCAGGGAACGCTGCTGCTGCTACTAATGCTTCCTCG
TCCTCGTCCTCGCCCTTGCCCACCACGGTGCAGAATGCCGGCAGGAACAG
TGCTGCAACCGCTGGAAGAGGACTGGCACAGGCATCGCCCACCCGACCGG
GAGGGAGAGGGATGGGCGGTTGGAGTCGGTTGGGTGAGGGAGGGAATGGA
GGAGGGGAAGAGGTGGAGATTGTGTACGATGGGAATCAACTTAATAACAC
TCCGAGGCAAATAGTATTGTAAATGCTGCCGGCGCATTGGCAATCAGGAG
CACCACAACCGCAACGCTACAAGCCGTGGACCAGCATGTCTTCCCAGCAG
CAGCAGCAGCCCACCCGTCTGCAGGAGACGCTGGGCAAAATCCCCTTGTG
CACCACGCTGATCACGCTCCTCTGCTTGATCCTGCAACTTTGCGTTGTTT
TCCTCAATTGGAATCTGAATGAATACTCCATCTCGCCTGCTGCCGTCGTT
TACGATCGCGAGTACTACCGGCTCATCACGAGCGCGTATTTCCACCTGGG
GTTCTTTCATATCGCTATGAATATGCTTTCCTTCGTGGGGATTGGTGCGT
GGTTGGAGATCAAGATGGGGACCCTCTATTTCTTCCTAACAATTCTGTTT
TCCACGGTCTTGACCAATGGATTGTATATTGGCATTTGCTTCTTTTTAGC
CGCCATTACTCACAGAGATCAATGGCTTTTTTACTCAAGCATTGGCTTCT
CCGGCGTCATTTTCACGCTCGCCGTCCTCGAGTCCCACTCCTCCCCACCC
AATGCCACCCGCTCCATCATGGGCATGTGCCAGGTCCCTTCCCGCGCGTA
CCCTTGGGTGCTTCTAATCATCATCCAGCTAATGCTTCCACACATTTCCT
TTGTCGGCCACCTTTCGGGCCTCCTGGTCGGAATCTTGCAATCGTACGGA
TGCATTGCCTTCCTTTTCCCTTCTGCGGCACTGCTGAATAAATTGGAGGG
AAGTTCCGCTTGTGCGTGTTTGACGCGGTTTCCTCAGTATATCCTATGTC
CGGACCAGGCGGATCATATATTGCCGAGGGGATCGGACGTGTTGCAGTGT
TGTGCTTGTATGAGGAGTGGCAGTCCCCGCCGATTTACGGGGAGTGGAGT
CTCTGGAACCGCGGCAGGGAACGCTGCTGCTGCTACTAATGCTTCCTCGT
CCTCGTCCTCGCCCTTGCCCACCACGGTGCAGAATGCCGGCAGGAACAGT
GCTGCAACCGCTGGAAGAGGACTGGCACAGGCATCGCCCACCCGACCGGG
AGGGAGAGGGATGGGCGGTTGGAGTCGGTTGGGTGAGGGAGGGAATGGAG
GAGGGGAAGAGGTGGAGATTGTGTACGATGGGAATCAACTTAATAACACT
CCGAGGCAAATAGTATTGTAAATGCTGCCGGCGCATTGGCAATCAGGAGC
ACCACAACCGCAACGCTACAAGCCGTGGACCAGCATGTCTTCCCAGCAGC
AGCAGCAGCCCACCCGTCTGCAGGAGACGCTGGGCAAAATCCCCTTGTGC
ACCACGCTGATCACGCTCCTCTGCTTGATCCTGCAACTTTGCGTTGTTTT
CCTCAATTGGAATCTGAATGAATACTCCATCTCGCCTGCTGCCGTCGTTT
ACGATCGCGAGTACTACCGGCTCATCACGAGCGCGTATTTCCACCTGGGG
TTCTTTCATATCGCTATGAATATGCTTTCCTTCGTGGGGATTGGTGCGTG
GTTGGAGATCAAGATGGGGACCCTCTATTTCTTCCTAACAATTCTGTTTT
CCACGGTCTTGACCAATGGATTGTATATTGGCATTTGCTTCTTTTTAG
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Synonyms
Publications