jgi.p|Nanoce1779_2|581030, mRNA_2642 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581030
Unique NamemRNA_2642
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1198
Alignment locationscaffold_5:831320..832517 +

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Properties
Property NameValue
TranscriptId581116
TrackFilteredModels2
ProteinId581030
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:831320..832517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581030gene_2642Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581030mRNA_2642-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2642CDS_2642Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2642 ID=mRNA_2642|Name=jgi.p|Nanoce1779_2|581030|organism=Nannochloropsis oceanica|type=mRNA|length=1198bp
CAGTTGGAAATTGACGATGACGTGCGGAAGTAGCGGGATGAGTGGCCTGG
AAGCCGTCCGGGTGCAGGAGCTGCAACGTGGCTGCGTGGTTTCGGGGACG
GCTCCAGTCACTTGCTTGGATTATCATCGGGAAGGTGAGTATTTAGTGAC
CGCGGCGGAGGACGGAACCGTGCACCTGATAAATGCCTTGGAGGGCAAAG
CGCGGAAGAAACTATTTTGCAAGAAGTATGGGGTGGAGCTGGCCAGGTTC
ACGCATCATGCCCAGAGTGTTTTGTGCAGTAGCCGGCCCTCGGCAAGCCA
GACAGCATCCGCCTTGGGAACGACGGCGCATGACATTCGTTATCTGTCCC
TGTACGACAACCAGTACTTGCGTTTTTTTTCGGGCCATGAAGCGCGAGTG
ACAGCGTTGGCCATGTCTTACACAGACGATCGATTTATGAGCGCATCGGT
TGATGGTACCGTTCGGATATGGACATTGCAGCAACCCAAGTGCTTGGGCC
AGGGCAACATTCAGATAGGTGGTGGGGGAAGCTACAGCAACAGCAGCAGT
AGTCCTTGTCCTGTTTTAGCGGAGTTTGACCCGTCGGGGTTGGTTTTTGC
AGTGTGCGCGCAGGTGCAAGACAGACATTTGTTGAAATTGTATGACGCGA
GGAAGTTCAGTGAAGGGGCTTTTGAAAATTTCGGGATCTCTGAGAATGAG
TTACGACAGACGTTGCTTGCACAACAACCAACGATTGACCCTGAGGTGGC
TCGTAAGTTGGTACAGGCTCCGTGGATTGACATGAGCTTTAGCGCGGACG
GGAAGAATTTACTGGTGTCGACCAAGGGAGGGATGACGCTTGTGATTGAC
ACTTACGATTTGCAAGTGACGAGGTTTCTGACCGGCTATAAGAATGAGAA
GGGATTGAATATCACAGCTTGTTATACCTCGGATGTGAACCACATTTTGA
CGGGCTCGGAGGAGGGGGAGGTATGTGTGTTTGATGCGACGGAGGAGAGG
GTAATGGACGGGGTGGTGTGTCGATTGAGTGGGCATACAGGCCCTGTGAG
GCAGGTGAAGTGTAACCCGGTCTACGAGCAGGTGGCGAGTGCGTGTAACC
ATGTGGTGTTGTGGATAACGCCCCCACGAGGGAAATAAATTAAATAAATG
GGATGAATGAATGAAAAGAATGCAACAAATGAAGAGGAGACCTCACCA
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protein sequence of jgi.p|Nanoce1779_2|581030

>mRNA_2642-protein ID=mRNA_2642-protein|Name=jgi.p|Nanoce1779_2|581030|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MTCGSSGMSGLEAVRVQELQRGCVVSGTAPVTCLDYHREGEYLVTAAEDG
TVHLINALEGKARKKLFCKKYGVELARFTHHAQSVLCSSRPSASQTASAL
GTTAHDIRYLSLYDNQYLRFFSGHEARVTALAMSYTDDRFMSASVDGTVR
IWTLQQPKCLGQGNIQIGGGGSYSNSSSSPCPVLAEFDPSGLVFAVCAQV
QDRHLLKLYDARKFSEGAFENFGISENELRQTLLAQQPTIDPEVARKLVQ
APWIDMSFSADGKNLLVSTKGGMTLVIDTYDLQVTRFLTGYKNEKGLNIT
ACYTSDVNHILTGSEEGEVCVFDATEERVMDGVVCRLSGHTGPVRQVKCN
PVYEQVASACNHVVLWITPPRGK*
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mRNA from alignment at scaffold_5:831320..832517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2642 ID=mRNA_2642|Name=jgi.p|Nanoce1779_2|581030|organism=Nannochloropsis oceanica|type=mRNA|length=1198bp|location=Sequence derived from alignment at scaffold_5:831320..832517+ (Nannochloropsis oceanica)
CAGTTGGAAATTGACGATGACGTGCGGAAGTAGCGGGATGAGTGGCCTGG
AAGCCGTCCGGGTGCAGGAGCTGCAACGTGGCTGCGTGGTTTCGGGGACG
GCTCCAGTCACTTGCTTGGATTATCATCGGGAAGGTGAGTATTTAGTGAC
CGCGGCGGAGGACGGAACCGTGCACCTGATAAATGCCTTGGAGGGCAAAG
CGCGGAAGAAACTATTTTGCAAGAAGTATGGGGTGGAGCTGGCCAGGTTC
ACGCATCATGCCCAGAGTGTTTTGTGCAGTAGCCGGCCCTCGGCAAGCCA
GACAGCATCCGCCTTGGGAACGACGGCGCATGACATTCGTTATCTGTCCC
TGTACGACAACCAGTACTTGCGTTTTTTTTCGGGCCATGAAGCGCGAGTG
ACAGCGTTGGCCATGTCTTACACAGACGATCGATTTATGAGCGCATCGGT
TGATGGTACCGTTCGGATATGGACATTGCAGCAACCCAAGTGCTTGGGCC
AGGGCAACATTCAGATAGGTGGTGGGGGAAGCTACAGCAACAGCAGCAGT
AGTCCTTGTCCTGTTTTAGCGGAGTTTGACCCGTCGGGGTTGGTTTTTGC
AGTGTGCGCGCAGGTGCAAGACAGACATTTGTTGAAATTGTATGACGCGA
GGAAGTTCAGTGAAGGGGCTTTTGAAAATTTCGGGATCTCTGAGAATGAG
TTACGACAGACGTTGCTTGCACAACAACCAACGATTGACCCTGAGGTGGC
TCGTAAGTTGGTACAGGCTCCGTGGATTGACATGAGCTTTAGCGCGGACG
GGAAGAATTTACTGGTGTCGACCAAGGGAGGGATGACGCTTGTGATTGAC
ACTTACGATTTGCAAGTGACGAGGTTTCTGACCGGCTATAAGAATGAGAA
GGGATTGAATATCACAGCTTGTTATACCTCGGATGTGAACCACATTTTGA
CGGGCTCGGAGGAGGGGGAGGTATGTGTGTTTGATGCGACGGAGGAGAGG
GTAATGGACGGGGTGGTGTGTCGATTGAGTGGGCATACAGGCCCTGTGAG
GCAGGTGAAGTGTAACCCGGTCTACGAGCAGGTGGCGAGTGCGTGTAACC
ATGTGGTGTTGTGGATAACGCCCCCACGAGGGAAATAAATTAAATAAATG
GGATGAATGAATGAAAAGAATGCAACAAATGAAGAGGAGACCTCACCA
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Coding sequence (CDS) from alignment at scaffold_5:831320..832517+

>mRNA_2642 ID=mRNA_2642|Name=jgi.p|Nanoce1779_2|581030|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_5:831320..832517+ (Nannochloropsis oceanica)
ATGACGTGCGGAAGTAGCGGGATGAGTGGCCTGGAAGCCGTCCGGGTGCA
GGAGCTGCAACGTGGCTGCGTGGTTTCGGGGACGGCTCCAGTCACTTGCT
TGGATTATCATCGGGAAGGTGAGTATTTAGTGACCGCGGCGGAGGACGGA
ACCGTGCACCTGATAAATGCCTTGGAGGGCAAAGCGCGGAAGAAACTATT
TTGCAAGAAGTATGGGGTGGAGCTGGCCAGGTTCACGCATCATGCCCAGA
GTGTTTTGTGCAGTAGCCGGCCCTCGGCAAGCCAGACAGCATCCGCCTTG
GGAACGACGGCGCATGACATTCGTTATCTGTCCCTGTACGACAACCAGTA
CTTGCGTTTTTTTTCGGGCCATGAAGCGCGAGTGACAGCGTTGGCCATGT
CTTACACAGACGATCGATTTATGAGCGCATCGGTTGATGGTACCGTTCGG
ATATGGACATTGCAGCAACCCAAGTGCTTGGGCCAGGGCAACATTCAGAT
AGGTGGTGGGGGAAGCTACAGCAACAGCAGCAGTAGTCCTTGTCCTGTTT
TAGCGGAGTTTGACCCGTCGGGGTTGGTTTTTGCAGTGTGCGCGCAGGTG
CAAGACAGACATTTGTTGAAATTGTATGACGCGAGGAAGTTCAGTGAAGG
GGCTTTTGAAAATTTCGGGATCTCTGAGAATGAGTTACGACAGACGTTGC
TTGCACAACAACCAACGATTGACCCTGAGGTGGCTCGTAAGTTGGTACAG
GCTCCGTGGATTGACATGAGCTTTAGCGCGGACGGGAAGAATTTACTGGT
GTCGACCAAGGGAGGGATGACGCTTGTGATTGACACTTACGATTTGCAAG
TGACGAGGTTTCTGACCGGCTATAAGAATGAGAAGGGATTGAATATCACA
GCTTGTTATACCTCGGATGTGAACCACATTTTGACGGGCTCGGAGGAGGG
GGAGGTATGTGTGTTTGATGCGACGGAGGAGAGGGTAATGGACGGGGTGG
TGTGTCGATTGAGTGGGCATACAGGCCCTGTGAGGCAGGTGAAGTGTAAC
CCGGTCTACGAGCAGGTGGCGAGTGCGTGTAACCATGTGGTGTTGTGGAT
AACGCCCCCACGAGGGAAATAA
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Synonyms
Publications