Properties
| Property Name | Value |
|---|
| TranscriptId | 581112 |
| Track | FilteredModels2 |
| ProteinId | 581026 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:829091..831166 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2641 ID=mRNA_2641|Name=jgi.p|Nanoce1779_2|581026|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp
CAGCACCAAAGGTACAACGACAAGGAAGCTTATCGGCCCGCTCGCCAGCT
TGCCGCAGCCCTAGCTTCCAGTCAATGGAGAAATTCGCCAAGTGGGCCGA
TAAAGGTACGGGTATCAACCCTTTTTTGCCACCACGCTCCACCACCTCCT
CCACGGCAGCCAAGGCAGGGGGCCTGGTTCTCAGTCTCGGCCTGCTCGCC
GTGCGCCTGCCCCTCCTCTGTATCACAGGCAGCTGGCTCTTCCTCGTCAG
TCTTCTCACCACCCCTTGGTTCGACATTTTGACTGGCAGTCTCCTTCTTG
CCGCCTGCTATGTCAATCACGCACCAAACCTACACACCGGAGGCTCTCCC
ACTCCCGAGCAAACAAGCATCACTCTCCTAGCCCTAGGAGTAAGCCTGGG
CCTCCTCCCCCCCCTCCATCGTCTTTTCTCCCTCCTCCTCCTCCGCCCAG
CCCTTGCCGCTGTCCTCAAAACTATGGGCATATCCTTTATTGAACAACAT
GCGAATTTACGGAAGCTCGGTTTGAGGCCACCAGGGCACAAGCCTCTAGT
TACACGCGTGGGTGCGACCATTCAACCCGGGGACCTCCTCCTGAGCAATC
ACACCTCTGCCTTGGACATCCTTTATTTTGCCAGTCGTTCCTTACCGTTG
TTTTCATGTTTCACGCTTGCCCCCGAGATAAGATTTAGCTCCCTGTCGGC
TTTCGGAGCGGTGTGGAAGGCAGGCAAAGTACCTAATAAAGCAGGCCAAG
GAGTGACTTTGGACAAGGTCTTAGCAGAAGCCAAGAGGGAGAGAAGGTCA
TTGGTAGTGTTTCCGGAAATGGTACGATCGAATGGGGAAGGAATATTGGC
CTTTCCCAAGGGAGTGTTGGACGGTTTAGCGGGGGCAGGGGAGGGAGGGG
GAGGAGCAGCAGGAGGAAGCGTAGGAGTGCATTTGTTTGGGTTTAGCGCC
GTCAAAGGCGACCTTCTTGCCACGCATACCGTTGGTAGCAGCTTGCGTTT
CTTTTTCAGGATCCTCTGCCGACCGCGAACCACCGTCCACGTCACTTACG
TCTGCGCGCGAGACGTGCCTTCTTATCCCGGAAGCCGCTGCAGCAGTGGG
AATAAAAGCACCAGCAGCACACCAGCGCAATGGAGTGAGGAAATTAGAGG
CCTTCTGGCCGGTATGTTGGGACGACCTAAGCTTGGGTTGGGGTACGATG
ATTTCGTAACCTTTGGTAAATATTATGCGGCAGTTCAGATTAAAGATGAT
AAAGCAGCAGCGGCGTTGGCGAGTGCGAGGGAGAAGCTGTAGCGATGAGG
AAGGGAGGGGGGGGGAGGGAGGGATGAGGGGAGGGGGGACATGTAGAGTT
AGTGAGAAGCGGGTAGTAAGTGAGGAGCAGGTAGATGCATGTGTAGAGTA
GAAGAAGGCAAGCGAAACCGACTGAATGCATAGCATCAAGTAACGTTTAA
ATGCACACAATCAGTGGATCGACTAGCAGCTGTAATAGCACGAGCACCAG
GGGCCGAGATCGGAGGGGGGAGAGGTGGAGGAGGGAGAATTATAAGGAAG
AAAACCCGGTAGACCTTGGTGTAATCACCAGGATACGGGCGCCTTAATAA
AGAAGTAAAATAAAAAGTGCTGCCCAAGGCTCACTGGAATGGGCCGGGCA
AAGAACATGAACATCGTCGGTCAGCGAGAAGAAGCAGAAGCAGAGAAGC back to topprotein sequence of jgi.p|Nanoce1779_2|581026 >mRNA_2641-protein ID=mRNA_2641-protein|Name=jgi.p|Nanoce1779_2|581026|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MEKFAKWADKGTGINPFLPPRSTTSSTAAKAGGLVLSLGLLAVRLPLLCI
TGSWLFLVSLLTTPWFDILTGSLLLAACYVNHAPNLHTGGSPTPEQTSIT
LLALGVSLGLLPPLHRLFSLLLLRPALAAVLKTMGISFIEQHANLRKLGL
RPPGHKPLVTRVGATIQPGDLLLSNHTSALDILYFASRSLPLFSCFTLAP
EIRFSSLSAFGAVWKAGKVPNKAGQGVTLDKVLAEAKRERRSLVVFPEMV
RSNGEGILAFPKGVLDGLAGAGEGGGGAAGGSVGVHLFGFSAVKGDLLAT
HTVGSSLRFFFRILCRPRTTVHVTYVCARDVPSYPGSRCSSGNKSTSSTP
AQWSEEIRGLLAGMLGRPKLGLGYDDFVTFGKYYAAVQIKDDKAAAALAS
AREKL* back to topmRNA from alignment at scaffold_5:829091..831166- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2641 ID=mRNA_2641|Name=jgi.p|Nanoce1779_2|581026|organism=Nannochloropsis oceanica|type=mRNA|length=2076bp|location=Sequence derived from alignment at scaffold_5:829091..831166- (Nannochloropsis oceanica)
CAGCACCAAAGGTACAACGACAAGGAAGCTTATCGGCCCGCTCGCCAGCT
TGCCGCAGCCCTAGCTTCCAGTCAATGGAGGTCAGTTAGCTCCTGTACGC
ATGCCCCAACATGCCCTCCCTCTCCATCCTCATTTCTCTCATTTCCCCTT
TCATTTGTGTTCATCCTTGAAGAAATTCGCCAAGTGGGCCGATAAAGGTA
CGGGTATCAACCCTTTTTTGCCACCACGCTCCACCACCTCCTCCACGGCA
GCCAAGGCAGGGGGCCTGGTTCTCAGTCTCGGCCTGCTCGCCGTGCGCCT
GCCCCTCCTCTGTATCACAGGCAGCTGGCTCTTCCTCGTCAGTCTTCTCA
CCACCCCTTGGTTCGACATTTTGACTGGCAGTCTCCTTCTTGCCGCCTGC
TATGTCAATCACGCACCAAACCTACACACCGGAGGCTCTCCCACTCCCGA
GCAAACAAGCATCACTCTCCTAGCCCTAGGAGTAAGCCTGGGCCTCCTCC
CCCCCCTCCATCGTCTTTTCTCCCTCCTCCTCCTCCGCCCAGCCCTTGCC
GCTGTCCTCAAAACTATGGGCATATCCTTTATTGAACAACATGCGAATTT
ACGGAAGCTCGGTTTGAGGCCACCAGGGCACAAGCCTCTAGTTACACGCG
TGGGTGCGACCATTCAACCCGGGGACCTCCTCCTGAGCAATCACACCTCT
GCCTTGGACATCCTTTATTTTGCCAGTCGTTCCTTACCGTTGTTTTCATG
TTTCACGCTTGCCCCCGAGATAAGATTTAGCTCCCTGTCGGCTTTCGGAG
CGGTGTGGAAGGCAGGCAAAGTACCTAATAAAGCAGGCCAAGGAGTGACT
TTGGACAAGGTCTTAGCAGAAGCCAAGAGGGAGAGAAGGTCATTGGTAGT
GTTTCCGGAAATGGTACGATCGAATGGGGAAGGAATATTGGCCTTTCCCA
AGGGAGTGTTGGACGGTTTAGCGGGGGCAGGGGAGGGAGGGGGAGGAGCA
GCAGGAGGAAGCGTAGGAGTGCATTTGTTTGGGTTTAGGTGCGTTGTGGG
AGAGGAGGGGGAATACGGGAGGGAGAGAAGATGAAAGCAAGCTTGGAATA
CACCGTGATGCAGCTGCGGGGGTCAAGCATATTATGCACTCCCGTAAACA
TTCTCTTCGACGGAAAGGGTCATAGAAAGCGATGCCAGTGGCGCCTGAGG
AGGGTGGGTTGGGAGACGTTGCCTTAATGCTGCCTATGGATGTCATGTCT
TGAACATGGATTCCACTACGTTCTTCCTATCTTTCTTCTCTCATACACAT
GCATATGTCTTCCCACACGACAGCGCCGTCAAAGGCGACCTTCTTGCCAC
GCATACCGTTGGTAGCAGCTTGCGTTTCTTTTTCAGGATCCTCTGCCGAC
CGCGAACCACCGTCCACGTCACTTACGTCTGCGCGCGAGACGTGCCTTCT
TATCCCGGAAGCCGCTGCAGCAGTGGGAATAAAAGCACCAGCAGCACACC
AGCGCAATGGAGTGAGGAAATTAGAGGCCTTCTGGCCGGTATGTTGGGAC
GACCTAAGCTTGGGTTGGGGTACGATGATTTCGTAACCTTTGGTAAATAT
TATGCGGCAGTTCAGATTAAAGATGATAAAGCAGCAGCGGCGTTGGCGAG
TGCGAGGGAGAAGCTGTAGCGATGAGGAAGGGAGGGGGGGGGAGGGAGGG
ATGAGGGGAGGGGGGACATGTAGAGTTAGTGAGAAGCGGGTAGTAAGTGA
GGAGCAGGTAGATGCATGTGTAGAGTAGAAGAAGGCAAGCGAAACCGACT
GAATGCATAGCATCAAGTAACGTTTAAATGCACACAATCAGTGGATCGAC
TAGCAGCTGTAATAGCACGAGCACCAGGGGCCGAGATCGGAGGGGGGAGA
GGTGGAGGAGGGAGAATTATAAGGAAGAAAACCCGGTAGACCTTGGTGTA
ATCACCAGGATACGGGCGCCTTAATAAAGAAGTAAAATAAAAAGTGCTGC
CCAAGGCTCACTGGAATGGGCCGGGCAAAGAACATGAACATCGTCGGTCA
GCGAGAAGAAGCAGAAGCAGAGAAGC back to topCoding sequence (CDS) from alignment at scaffold_5:829091..831166- >mRNA_2641 ID=mRNA_2641|Name=jgi.p|Nanoce1779_2|581026|organism=Nannochloropsis oceanica|type=CDS|length=3654bp|location=Sequence derived from alignment at scaffold_5:829091..831166- (Nannochloropsis oceanica)
CGCCGTCAAAGGCGACCTTCTTGCCACGCATACCGTTGGTAGCAGCTTGC
GTTTCTTTTTCAGGATCCTCTGCCGACCGCGAACCACCGTCCACGTCACT
TACGTCTGCGCGCGAGACGTGCCTTCTTATCCCGGAAGCCGCTGCAGCAG
TGGGAATAAAAGCACCAGCAGCACACCAGCGCAATGGAGTGAGGAAATTA
GAGGCCTTCTGGCCGGTATGTTGGGACGACCTAAGCTTGGGTTGGGGTAC
GATGATTTCGTAACCTTTGGTAAATATTATGCGGCAGTTCAGATTAAAGA
TGATAAAGCAGCAGCGGCGTTGGCGAGTGCGAGGGAGAAGCTGTAGAAAT
TCGCCAAGTGGGCCGATAAAGGTACGGGTATCAACCCTTTTTTGCCACCA
CGCTCCACCACCTCCTCCACGGCAGCCAAGGCAGGGGGCCTGGTTCTCAG
TCTCGGCCTGCTCGCCGTGCGCCTGCCCCTCCTCTGTATCACAGGCAGCT
GGCTCTTCCTCGTCAGTCTTCTCACCACCCCTTGGTTCGACATTTTGACT
GGCAGTCTCCTTCTTGCCGCCTGCTATGTCAATCACGCACCAAACCTACA
CACCGGAGGCTCTCCCACTCCCGAGCAAACAAGCATCACTCTCCTAGCCC
TAGGAGTAAGCCTGGGCCTCCTCCCCCCCCTCCATCGTCTTTTCTCCCTC
CTCCTCCTCCGCCCAGCCCTTGCCGCTGTCCTCAAAACTATGGGCATATC
CTTTATTGAACAACATGCGAATTTACGGAAGCTCGGTTTGAGGCCACCAG
GGCACAAGCCTCTAGTTACACGCGTGGGTGCGACCATTCAACCCGGGGAC
CTCCTCCTGAGCAATCACACCTCTGCCTTGGACATCCTTTATTTTGCCAG
TCGTTCCTTACCGTTGTTTTCATGTTTCACGCTTGCCCCCGAGATAAGAT
TTAGCTCCCTGTCGGCTTTCGGAGCGGTGTGGAAGGCAGGCAAAGTACCT
AATAAAGCAGGCCAAGGAGTGACTTTGGACAAGGTCTTAGCAGAAGCCAA
GAGGGAGAGAAGGTCATTGGTAGTGTTTCCGGAAATGGTACGATCGAATG
GGGAAGGAATATTGGCCTTTCCCAAGGGAGTGTTGGACGGTTTAGCGGGG
GCAGGGGAGGGAGGGGGAGGAGCAGCAGGAGGAAGCGTAGGAGTGCATTT
GTTTGGGTTTAGATGGAGCGCCGTCAAAGGCGACCTTCTTGCCACGCATA
CCGTTGGTAGCAGCTTGCGTTTCTTTTTCAGGATCCTCTGCCGACCGCGA
ACCACCGTCCACGTCACTTACGTCTGCGCGCGAGACGTGCCTTCTTATCC
CGGAAGCCGCTGCAGCAGTGGGAATAAAAGCACCAGCAGCACACCAGCGC
AATGGAGTGAGGAAATTAGAGGCCTTCTGGCCGGTATGTTGGGACGACCT
AAGCTTGGGTTGGGGTACGATGATTTCGTAACCTTTGGTAAATATTATGC
GGCAGTTCAGATTAAAGATGATAAAGCAGCAGCGGCGTTGGCGAGTGCGA
GGGAGAAGCTGTAGAAATTCGCCAAGTGGGCCGATAAAGGTACGGGTATC
AACCCTTTTTTGCCACCACGCTCCACCACCTCCTCCACGGCAGCCAAGGC
AGGGGGCCTGGTTCTCAGTCTCGGCCTGCTCGCCGTGCGCCTGCCCCTCC
TCTGTATCACAGGCAGCTGGCTCTTCCTCGTCAGTCTTCTCACCACCCCT
TGGTTCGACATTTTGACTGGCAGTCTCCTTCTTGCCGCCTGCTATGTCAA
TCACGCACCAAACCTACACACCGGAGGCTCTCCCACTCCCGAGCAAACAA
GCATCACTCTCCTAGCCCTAGGAGTAAGCCTGGGCCTCCTCCCCCCCCTC
CATCGTCTTTTCTCCCTCCTCCTCCTCCGCCCAGCCCTTGCCGCTGTCCT
CAAAACTATGGGCATATCCTTTATTGAACAACATGCGAATTTACGGAAGC
TCGGTTTGAGGCCACCAGGGCACAAGCCTCTAGTTACACGCGTGGGTGCG
ACCATTCAACCCGGGGACCTCCTCCTGAGCAATCACACCTCTGCCTTGGA
CATCCTTTATTTTGCCAGTCGTTCCTTACCGTTGTTTTCATGTTTCACGC
TTGCCCCCGAGATAAGATTTAGCTCCCTGTCGGCTTTCGGAGCGGTGTGG
AAGGCAGGCAAAGTACCTAATAAAGCAGGCCAAGGAGTGACTTTGGACAA
GGTCTTAGCAGAAGCCAAGAGGGAGAGAAGGTCATTGGTAGTGTTTCCGG
AAATGGTACGATCGAATGGGGAAGGAATATTGGCCTTTCCCAAGGGAGTG
TTGGACGGTTTAGCGGGGGCAGGGGAGGGAGGGGGAGGAGCAGCAGGAGG
AAGCGTAGGAGTGCATTTGTTTGGGTTTAGATGGAGCGCCGTCAAAGGCG
ACCTTCTTGCCACGCATACCGTTGGTAGCAGCTTGCGTTTCTTTTTCAGG
ATCCTCTGCCGACCGCGAACCACCGTCCACGTCACTTACGTCTGCGCGCG
AGACGTGCCTTCTTATCCCGGAAGCCGCTGCAGCAGTGGGAATAAAAGCA
CCAGCAGCACACCAGCGCAATGGAGTGAGGAAATTAGAGGCCTTCTGGCC
GGTATGTTGGGACGACCTAAGCTTGGGTTGGGGTACGATGATTTCGTAAC
CTTTGGTAAATATTATGCGGCAGTTCAGATTAAAGATGATAAAGCAGCAG
CGGCGTTGGCGAGTGCGAGGGAGAAGCTGTAGAAATTCGCCAAGTGGGCC
GATAAAGGTACGGGTATCAACCCTTTTTTGCCACCACGCTCCACCACCTC
CTCCACGGCAGCCAAGGCAGGGGGCCTGGTTCTCAGTCTCGGCCTGCTCG
CCGTGCGCCTGCCCCTCCTCTGTATCACAGGCAGCTGGCTCTTCCTCGTC
AGTCTTCTCACCACCCCTTGGTTCGACATTTTGACTGGCAGTCTCCTTCT
TGCCGCCTGCTATGTCAATCACGCACCAAACCTACACACCGGAGGCTCTC
CCACTCCCGAGCAAACAAGCATCACTCTCCTAGCCCTAGGAGTAAGCCTG
GGCCTCCTCCCCCCCCTCCATCGTCTTTTCTCCCTCCTCCTCCTCCGCCC
AGCCCTTGCCGCTGTCCTCAAAACTATGGGCATATCCTTTATTGAACAAC
ATGCGAATTTACGGAAGCTCGGTTTGAGGCCACCAGGGCACAAGCCTCTA
GTTACACGCGTGGGTGCGACCATTCAACCCGGGGACCTCCTCCTGAGCAA
TCACACCTCTGCCTTGGACATCCTTTATTTTGCCAGTCGTTCCTTACCGT
TGTTTTCATGTTTCACGCTTGCCCCCGAGATAAGATTTAGCTCCCTGTCG
GCTTTCGGAGCGGTGTGGAAGGCAGGCAAAGTACCTAATAAAGCAGGCCA
AGGAGTGACTTTGGACAAGGTCTTAGCAGAAGCCAAGAGGGAGAGAAGGT
CATTGGTAGTGTTTCCGGAAATGGTACGATCGAATGGGGAAGGAATATTG
GCCTTTCCCAAGGGAGTGTTGGACGGTTTAGCGGGGGCAGGGGAGGGAGG
GGGAGGAGCAGCAGGAGGAAGCGTAGGAGTGCATTTGTTTGGGTTTAGAT
GGAG back to top
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