jgi.p|Nanoce1779_2|581022, mRNA_2640 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581022
Unique NamemRNA_2640
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1487
Alignment locationscaffold_5:826821..828775 -

Link to JBrowse

Properties
Property NameValue
TranscriptId581108
TrackFilteredModels2
ProteinId581022
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:826821..828775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581022gene_2640Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581022mRNA_2640-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2640CDS_2640Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2640 ID=mRNA_2640|Name=jgi.p|Nanoce1779_2|581022|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp
AGTAATTCTACCATGATCGCTACGCGTGCCTTGCTCTGCCTGGCCCTACC
GGCCTTGGCCTCCGCCTTCGTTAGCCGTGCCCCCACTGCTGTGACCCGCG
CCTCTGCTCCTGTGAAGGGCCGCACAGTGGTAATGGAGTCCATCTCGGAC
TTCCTCAAGTTTGATGCGAAGCTCGGCGAGCTGGAAGTGACCAAGGCTGG
CGTCTCCGCTCCCTTCGGTTTCTTCGATCCCTTAAACTTTTACGGCGGCC
AAAGCACCCGCACCAAGAAGAAGTTCCGTGAGTCAGAGCTCAAGCACGGC
CGCGTCGCTATGATGGCCGTGGCTGGCATTTTTTTTCAAGAAATCTGGCA
CCCGTTGTTGGCGGGGGATGACTTCGAGACAGCGCTGGACCAATACTATG
GAGTGACGGAGTTTATACCTGATTTTGGCCTGGGGGCGATGTTTGTGTTG
TCGTTGTTCGAATTCAAGAGCATTGCCAAGGGCTGGGACCCGATTGAAGA
GACGCTTAAGAACCCAAAAATTGCTGGCATGCGCGACGACTACGTGGCAG
GTGATTTACAGTACGATCCCCTTGGCTTCTGCCCTGACGATGACGAGGAC
TTTATCACCATGCGCACGAAGGAGCTGAATAATGGCCGCATGGCGATGAT
TGCCGTCATTGGCATTATTGCCCAGGAGATTGTGACGGGCGTCCCTATTG
TTAAGTCCATCTTTGGATAAATATCTGATGATGTGTGTGTGTGTGCGTGA
GAAAGAGAAAGCAAGAAGGGACTCAAAAAAAGAAAATAAAAGAGATATGG
AGAAGCAGTGTATGTGTGTGTGTTCGTATGTTTGTTTGAAAATATGCTGT
GATAAAACTGGTTTGTGTGGGTCCGTGCGTTGGCAGTGGCGTCATATGAA
CTTGTGTTGAGTGTGTTTTATCTTAACAAAGAAGCAGACACAAGAGATTA
AGAAGAGTAAATGAAATCAGGCCAAATGCTATTTGATTCTACATGCTTTT
CTGAAAGCGTTCCTTAATCTTTAATTTTATATCTGCTGGTTGCGCATTTT
CTACATCATGCTTAGTAATTTCCTAGAGGGACATTGCAATTCTATTTGAA
AAATGGATGGTGGGTGCCATACATAGCACGCCTGTGCGGAGCGCCCCGTA
AATTGGGCTGAGGCAGGTGGGAAATCGCACCAACACACTACCATCATCAT
AAGTCATCCTGCTCACGGCGTGTATACTTTCAAACAGGGGACGAGGAAGT
CGTTATGGAGCTCGGCACGCAACCCATCGCCAATCGCGGACGTGCTCTCT
TCCCTTTCTTTCCCTTTCCACAATTCCATCATTATTCACGCATCGCACTC
ACACAAAGAAATCCACCCATATAAGCATAACGCTACCATACAATTGCATA
TCTGCCTTGTCTAGTGCCTGTCCTTCATCTTCACCGGTGCCCAAGGCAAA
CCAAGCACAAGCGAATAGAGGCAACCACTCCACTTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|581022

>mRNA_2640-protein ID=mRNA_2640-protein|Name=jgi.p|Nanoce1779_2|581022|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MIATRALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKF
DAKLGELEVTKAGVSAPFGFFDPLNFYGGQSTRTKKKFRESELKHGRVAM
MAVAGIFFQEIWHPLLAGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFE
FKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITM
RTKELNNGRMAMIAVIGIIAQEIVTGVPIVKSIFG*
back to top

mRNA from alignment at scaffold_5:826821..828775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2640 ID=mRNA_2640|Name=jgi.p|Nanoce1779_2|581022|organism=Nannochloropsis oceanica|type=mRNA|length=1955bp|location=Sequence derived from alignment at scaffold_5:826821..828775- (Nannochloropsis oceanica)
AGTAATTCTACCATGATCGCTACGCGTGCCTTGCTCTGCCTGGCCCTACC
GGCCTTGGCCTCCGCCTTCGTTAGCCGTGCCCCCACTGCTGTGACCCGCG
CCTCTGCTCCTGTGAAGGGCCGCACAGTGGTAATGGAGTCCATCTCGGAC
TTCCTCAAGTTTGATGCGAAGCTCGGCGAGCTGGAAGTGACCAAGGCTGG
CGTGTAAGTAGACGTGGACAGGAGGGAGGGAGGAAAGTAACGGTGGAAGG
ACGATGATGAGGAGCGGGCTGGCTTGGGTGGGTTTGCCTCTTTGTACATG
CGGCCTTCGTGGATGATGCCCACGTTTTCAGTTTAATGGCCATCGTATTG
TCCGTCCAGGTGTGGAGCATCAGCCACGCCATCGTCTTTCTTTTTCACCC
CTTTACACTTTTTCTTATTCCGAACACCCACAGCTCCGCTCCCTTCGGTT
TCTTCGATCCCTTAAACTTTTACGGCGGCCAAAGCACCCGCACCAAGAAG
AAGTTCCGTGAGTCAGAGCTCAAGCACGGCCGCGTCGCTATGATGGCCGT
GGCTGGCATTTTTTTTCAAGAAATCTGGCACCCGTTGTTGGCGGGGGATG
ACTTCGAGACAGCGCTGGACCAATACTATGGAGTGACGGAGTTTATACCT
GATTTTGGCCTGGGGGCGATGTTTGTGTTGTCGTTGTTCGAATTCAAGAG
CATTGCCAAGGGCTGGGACCCGATTGAAGAGACGCTTAAGAACCCAAGTA
CGTGTCTTGTGTGTGGTTTCTGATGCTGCCTCTTTTTGTCAACTATCTTG
AGGCTGTCTCTGTGAGTCCAATTGTCCCTGTCGAACCCCCCGCTCGTTTA
TACACTTCAGCAGAATCAGCCATTAACCTGCCTCTGACCCTCTCTGTTAC
CGCATCTACTTGCTGGTCGTAATGTATATCCTAACCAAAACCAACCATGT
CCCCAACCTTCCTCTTCTCCCCCTCCACGACATAGAAATTGCTGGCATGC
GCGACGACTACGTGGCAGGTGATTTACAGTACGATCCCCTTGGCTTCTGC
CCTGACGATGACGAGGACTTTATCACCATGCGCACGAAGGAGCTGAATAA
TGGCCGCATGGCGATGATTGCCGTCATTGGCATTATTGCCCAGGAGATTG
TGACGGGCGTCCCTATTGTTAAGTCCATCTTTGGATAAATATCTGATGAT
GTGTGTGTGTGTGCGTGAGAAAGAGAAAGCAAGAAGGGACTCAAAAAAAG
AAAATAAAAGAGATATGGAGAAGCAGTGTATGTGTGTGTGTTCGTATGTT
TGTTTGAAAATATGCTGTGATAAAACTGGTTTGTGTGGGTCCGTGCGTTG
GCAGTGGCGTCATATGAACTTGTGTTGAGTGTGTTTTATCTTAACAAAGA
AGCAGACACAAGAGATTAAGAAGAGTAAATGAAATCAGGCCAAATGCTAT
TTGATTCTACATGCTTTTCTGAAAGCGTTCCTTAATCTTTAATTTTATAT
CTGCTGGTTGCGCATTTTCTACATCATGCTTAGTAATTTCCTAGAGGGAC
ATTGCAATTCTATTTGAAAAATGGATGGTGGGTGCCATACATAGCACGCC
TGTGCGGAGCGCCCCGTAAATTGGGCTGAGGCAGGTGGGAAATCGCACCA
ACACACTACCATCATCATAAGTCATCCTGCTCACGGCGTGTATACTTTCA
AACAGGGGACGAGGAAGTCGTTATGGAGCTCGGCACGCAACCCATCGCCA
ATCGCGGACGTGCTCTCTTCCCTTTCTTTCCCTTTCCACAATTCCATCAT
TATTCACGCATCGCACTCACACAAAGAAATCCACCCATATAAGCATAACG
CTACCATACAATTGCATATCTGCCTTGTCTAGTGCCTGTCCTTCATCTTC
ACCGGTGCCCAAGGCAAACCAAGCACAAGCGAATAGAGGCAACCACTCCA
CTTGA
back to top

Coding sequence (CDS) from alignment at scaffold_5:826821..828775-

>mRNA_2640 ID=mRNA_2640|Name=jgi.p|Nanoce1779_2|581022|organism=Nannochloropsis oceanica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_5:826821..828775- (Nannochloropsis oceanica)
AAATTGCTGGCATGCGCGACGACTACGTGGCAGGTGATTTACAGTACGAT
CCCCTTGGCTTCTGCCCTGACGATGACGAGGACTTTATCACCATGCGCAC
GAAGGAGCTGAATAATGGCCGCATGGCGATGATTGCCGTCATTGGCATTA
TTGCCCAGGAGATTGTGACGGGCGTCCCTATTGTTAAGTCCATCTTTGGA
TAACTCCGCTCCCTTCGGTTTCTTCGATCCCTTAAACTTTTACGGCGGCC
AAAGCACCCGCACCAAGAAGAAGTTCCGTGAGTCAGAGCTCAAGCACGGC
CGCGTCGCTATGATGGCCGTGGCTGGCATTTTTTTTCAAGAAATCTGGCA
CCCGTTGTTGGCGGGGGATGACTTCGAGACAGCGCTGGACCAATACTATG
GAGTGACGGAGTTTATACCTGATTTTGGCCTGGGGGCGATGTTTGTGTTG
TCGTTGTTCGAATTCAAGAGCATTGCCAAGGGCTGGGACCCGATTGAAGA
GACGCTTAAGAACCCAAATGATCGCTACGCGTGCCTTGCTCTGCCTGGCC
CTACCGGCCTTGGCCTCCGCCTTCGTTAGCCGTGCCCCCACTGCTGTGAC
CCGCGCCTCTGCTCCTGTGAAGGGCCGCACAGTGGTAATGGAGTCCATCT
CGGACTTCCTCAAGTTTGATGCGAAGCTCGGCGAGCTGGAAGTGACCAAG
GCTGGCGTAAATTGCTGGCATGCGCGACGACTACGTGGCAGGTGATTTAC
AGTACGATCCCCTTGGCTTCTGCCCTGACGATGACGAGGACTTTATCACC
ATGCGCACGAAGGAGCTGAATAATGGCCGCATGGCGATGATTGCCGTCAT
TGGCATTATTGCCCAGGAGATTGTGACGGGCGTCCCTATTGTTAAGTCCA
TCTTTGGATAACTCCGCTCCCTTCGGTTTCTTCGATCCCTTAAACTTTTA
CGGCGGCCAAAGCACCCGCACCAAGAAGAAGTTCCGTGAGTCAGAGCTCA
AGCACGGCCGCGTCGCTATGATGGCCGTGGCTGGCATTTTTTTTCAAGAA
ATCTGGCACCCGTTGTTGGCGGGGGATGACTTCGAGACAGCGCTGGACCA
ATACTATGGAGTGACGGAGTTTATACCTGATTTTGGCCTGGGGGCGATGT
TTGTGTTGTCGTTGTTCGAATTCAAGAGCATTGCCAAGGGCTGGGACCCG
ATTGAAGAGACGCTTAAGAACCCAAATGATCGCTACGCGTGCCTTGCTCT
GCCTGGCCCTACCGGCCTTGGCCTCCGCCTTCGTTAGCCGTGCCCCCACT
GCTGTGACCCGCGCCTCTGCTCCTGTGAAGGGCCGCACAGTGGTAATGGA
GTCCATCTCGGACTTCCTCAAGTTTGATGCGAAGCTCGGCGAGCTGGAAG
TGACCAAGGCTGGCGTAAATTGCTGGCATGCGCGACGACTACGTGGCAGG
TGATTTACAGTACGATCCCCTTGGCTTCTGCCCTGACGATGACGAGGACT
TTATCACCATGCGCACGAAGGAGCTGAATAATGGCCGCATGGCGATGATT
GCCGTCATTGGCATTATTGCCCAGGAGATTGTGACGGGCGTCCCTATTGT
TAAGTCCATCTTTGGATAACTCCGCTCCCTTCGGTTTCTTCGATCCCTTA
AACTTTTACGGCGGCCAAAGCACCCGCACCAAGAAGAAGTTCCGTGAGTC
AGAGCTCAAGCACGGCCGCGTCGCTATGATGGCCGTGGCTGGCATTTTTT
TTCAAGAAATCTGGCACCCGTTGTTGGCGGGGGATGACTTCGAGACAGCG
CTGGACCAATACTATGGAGTGACGGAGTTTATACCTGATTTTGGCCTGGG
GGCGATGTTTGTGTTGTCGTTGTTCGAATTCAAGAGCATTGCCAAGGGCT
GGGACCCGATTGAAGAGACGCTTAAGAACCCAAATGATCGCTACGCGTGC
CTTGCTCTGCCTGGCCCTACCGGCCTTGGCCTCCGCCTTCGTTAGCCGTG
CCCCCACTGCTGTGACCCGCGCCTCTGCTCCTGTGAAGGGCCGCACAGTG
GTAATGGAGTCCATCTCGGACTTCCTCAAGTTTGATGCGAAGCTCGGCGA
GCTGGAAGTGACCAAGGCTGGCGT
back to top
Synonyms
Publications