jgi.p|Nanoce1779_2|576752, mRNA_264 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576752
Unique Name	mRNA_264
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2662
Alignment location	scaffold_3:659526..662187 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576838
Track	FilteredModels2
ProteinId	576752

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:659526..662187 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576752	gene_264	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576752	mRNA_264-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_264	CDS_264	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:659526..662187+
coding sequence from alignment at scaffold_3:659526..662187+

mRNA sequence

>mRNA_264 ID=mRNA_264|Name=jgi.p|Nanoce1779_2|576752|organism=Nannochloropsis oceanica|type=mRNA|length=2662bp
ACAGGCAGAGGCCACTCATGGCTTCTCCCCTTTTGTCCACAGATGATGAA
CAGGACGTGGAATTTGACCCTGCTGCTGTCTCCATCATTCGCCAACACTG
GATCGACAAGCAGCTCAAAAAGCGGGAGCTCGAGTTTACAGAGTATCGGA
CAGCTACTGTCTTTTGCGGAACCTACAATGTCAACGCGAAGCTGATTGCG
GATGAGGACGTATGGCAGCTGGAATCCTGGCTTTTTTCAGAAACGGAGAA
GCCCGCAGATATTTTCGCAGTCGGCTTCCAGGAAATCGTTGACCTGAACG
CGGTGAACGTGGCCATGGACGGCAAGTCCCTGCAGCGGGCCCAAGCATGG
CAAGAGAAGTTAAGTGCCGTCCTAAATAACACCAAGGGTAGGGATCGTTA
TGTCCTTGTGGGGGAAAAGCACTTGGTGGGCATTTTAATTCTGGTGTTCG
CGAAGGAGATGCATTTGCGAAATATTCGGGAGGTGTACGGCGCGACAGTT
GGGGTGGGCTTGATGGGCATGGCGGGCAATAAAGGGGGAGCTTCAATCCG
CCTCAAGTTCTATGATTCGTACCTGTGTTTTGTGTGCGCGCATTTAGCGG
CGCACCGAGAGAATGTAGAAGGTCGGAATAGCGATTTTGCTAATATTCTG
CAGAAGACTGTATTCATTGATAAGGCCTTTAGTGGCGAGCCCGGGGCACC
GGCGCCTGGGTTGGGGGACGCTAGTGAGGAGATGCGCAAATATTTTTCGG
AGGTGCTGGAGGTAGAGCCGACGTTGCAAACCGGTGTGTCCATTTTAGAT
CACGATGTCGTGTTTTTTATCGGCGATTTGAATTATCGCTTCGATGAGAG
TGTGGATACGGAGGAGTGCTTTGCCAAAATCGAGGCGCAGGATTTAGAAT
TTTTGCGGCGATATGACCAGCTAAATATGGAGCGAAATCAAGGGAGGGTG
TTCGTAGGATTTCAAGAGCCGGTGCTGAGATTCCCGCCGACTTACAAATA
CCAACCAGGGACGCCTTTGTATGAGCGACGGCCGGAGAAGAAATTACGGT
GCCCTGCTTGGTGTGATCGTATCCTGTGGCGTGCAAAGGACCCAAGTCAA
GCACGTTGTTTGACGTACCGGAGGGCGGAACTTTGTTTCTCGGACCATAA
GCCTGTTGCGGCGCAGTTGCAAGCCAAGGTACGGATGGTGGTGAAGGAGA
AGCGGCAAGAGGTGGCAGCAGAAATCCATCGTCTGCTCGACAAACTTGAA
AATGATCAGCATCCGAAGGTCCAAATAGAAGTGCCAGGGGCTGCGGCTTT
GGTCCCGCCGCAACCGCCTAACTCGATTGATTTTGGCCTCGTGCGATATG
GGGTGGAAGTTAGGCAGACATTGGTGGTGACGAATGTGTCGAGTGTGGCA
GCGCAATTTCGCTTCGTTCCCAAGCTGGAGGAGGAGACAATCTGCAAGCA
CTGGTTGAGCATCAAGCCGCGCTTTGGCATGCTTTTGCCGAATGAAGCGG
CTCATATTACGTTCACGGCTTTGATAGACCTTAAGACCGCACAAGCTCTC
AACGCCGGCCAGGACCTTCTTGACGACATCCTAATTTTGCGTCTCGAGAA
CGGACAAGATTTCTTCCTCTCCGTCAACGGCACTTACGCCCGCTCCGCTT
TTGGGATGAGCCTCGAAGAACTCACCAACTGCCACGTACCTGTCCGCTCC
CTTCCCTTGCCCGCAGCAAAGTGGTCGCCTTCCACATCTGCCGCCGCCAC
GGCCGCTGCCTCCAGCAGCAACAGCAAGCAAGCCATCGCTCCCCCTACTT
CGGTGGGTGGCCCCGCACTGTCAATACCCAAGGAATTGTGGCGGCTGGTC
GACGCGCTTTATCGACGGGGGTTGACGGAGAAGGACTTGTTCATTCTGCC
AGGTGCTCCTGGGGAGATGCAGGCCGTGAGAGAGGCGTTGGATGCGGGCG
CCGAGATAGATGAGAAGGCTTCAGTTCACTCTTTGGCTGAGGTGCTTCTG
GCGTTTTTGGCCTCCCTTGCTACCCCTGTTGTGCCCGGTCGCTTGTTGCC
CACTATTGAAATTGACGCTCAAAACCTACGACCGTGGACGAGGCGGTTTT
TGGAGCAGCTTCCGCCGTTGAACTACAATGTGTTTGTGTATTTGATTTCA
TTCTTTCGGGAGGTTCTGAAGTACCATGAGTCGAATAGGCTTAACACAGA
TAAGCTTGCAACCATATGCTGTAAGACTTTGGTTGCCGGAAATGGGTTGT
CATGGGGTAGTGGGGAGGACGCGGCAGCTGGTGGCGTGTTGGACAAGGGC
GGAGGGGAGGACCAGCGCTTGGAGAGCATGCACTTTGTGTTTCAGCATTT
TTTGACAACTAGTGTATTTTAGAATGCTGTGATGTGTGGAAAGGGCTGGA
AAAGGAAGGATGGAGAGGATAAATGTTAATGTAGATATGTTAGTTTAGTT
CATAAGTGCCAGTGGGATAAAAAAGGCACGGCGTCACTGAGAAGCTGGGG
AGATTAGAGAAAGAAAGAAAGAGGCATAGAAAAAACGAAAGCATAACGCT
CGTACTCAAAGATGTCTGGGAGTGTACATCACAACATATTCCCGAGACAT
GCTCAACATTACTTTGGACTAGCAGGCAGAAAAAAGGGTCCAAAATATTG
GCACAATGCTTG

protein sequence of jgi.p|Nanoce1779_2|576752

>mRNA_264-protein ID=mRNA_264-protein|Name=jgi.p|Nanoce1779_2|576752|organism=Nannochloropsis oceanica|type=polypeptide|length=785bp
MASPLLSTDDEQDVEFDPAAVSIIRQHWIDKQLKKRELEFTEYRTATVFC
GTYNVNAKLIADEDVWQLESWLFSETEKPADIFAVGFQEIVDLNAVNVAM
DGKSLQRAQAWQEKLSAVLNNTKGRDRYVLVGEKHLVGILILVFAKEMHL
RNIREVYGATVGVGLMGMAGNKGGASIRLKFYDSYLCFVCAHLAAHRENV
EGRNSDFANILQKTVFIDKAFSGEPGAPAPGLGDASEEMRKYFSEVLEVE
PTLQTGVSILDHDVVFFIGDLNYRFDESVDTEECFAKIEAQDLEFLRRYD
QLNMERNQGRVFVGFQEPVLRFPPTYKYQPGTPLYERRPEKKLRCPAWCD
RILWRAKDPSQARCLTYRRAELCFSDHKPVAAQLQAKVRMVVKEKRQEVA
AEIHRLLDKLENDQHPKVQIEVPGAAALVPPQPPNSIDFGLVRYGVEVRQ
TLVVTNVSSVAAQFRFVPKLEEETICKHWLSIKPRFGMLLPNEAAHITFT
ALIDLKTAQALNAGQDLLDDILILRLENGQDFFLSVNGTYARSAFGMSLE
ELTNCHVPVRSLPLPAAKWSPSTSAAATAAASSSNSKQAIAPPTSVGGPA
LSIPKELWRLVDALYRRGLTEKDLFILPGAPGEMQAVREALDAGAEIDEK
ASVHSLAEVLLAFLASLATPVVPGRLLPTIEIDAQNLRPWTRRFLEQLPP
LNYNVFVYLISFFREVLKYHESNRLNTDKLATICCKTLVAGNGLSWGSGE
DAAAGGVLDKGGGEDQRLESMHFVFQHFLTTSVF*

mRNA from alignment at scaffold_3:659526..662187+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_264 ID=mRNA_264|Name=jgi.p|Nanoce1779_2|576752|organism=Nannochloropsis oceanica|type=mRNA|length=2662bp|location=Sequence derived from alignment at scaffold_3:659526..662187+ (Nannochloropsis oceanica)
ACAGGCAGAGGCCACTCATGGCTTCTCCCCTTTTGTCCACAGATGATGAA
CAGGACGTGGAATTTGACCCTGCTGCTGTCTCCATCATTCGCCAACACTG
GATCGACAAGCAGCTCAAAAAGCGGGAGCTCGAGTTTACAGAGTATCGGA
CAGCTACTGTCTTTTGCGGAACCTACAATGTCAACGCGAAGCTGATTGCG
GATGAGGACGTATGGCAGCTGGAATCCTGGCTTTTTTCAGAAACGGAGAA
GCCCGCAGATATTTTCGCAGTCGGCTTCCAGGAAATCGTTGACCTGAACG
CGGTGAACGTGGCCATGGACGGCAAGTCCCTGCAGCGGGCCCAAGCATGG
CAAGAGAAGTTAAGTGCCGTCCTAAATAACACCAAGGGTAGGGATCGTTA
TGTCCTTGTGGGGGAAAAGCACTTGGTGGGCATTTTAATTCTGGTGTTCG
CGAAGGAGATGCATTTGCGAAATATTCGGGAGGTGTACGGCGCGACAGTT
GGGGTGGGCTTGATGGGCATGGCGGGCAATAAAGGGGGAGCTTCAATCCG
CCTCAAGTTCTATGATTCGTACCTGTGTTTTGTGTGCGCGCATTTAGCGG
CGCACCGAGAGAATGTAGAAGGTCGGAATAGCGATTTTGCTAATATTCTG
CAGAAGACTGTATTCATTGATAAGGCCTTTAGTGGCGAGCCCGGGGCACC
GGCGCCTGGGTTGGGGGACGCTAGTGAGGAGATGCGCAAATATTTTTCGG
AGGTGCTGGAGGTAGAGCCGACGTTGCAAACCGGTGTGTCCATTTTAGAT
CACGATGTCGTGTTTTTTATCGGCGATTTGAATTATCGCTTCGATGAGAG
TGTGGATACGGAGGAGTGCTTTGCCAAAATCGAGGCGCAGGATTTAGAAT
TTTTGCGGCGATATGACCAGCTAAATATGGAGCGAAATCAAGGGAGGGTG
TTCGTAGGATTTCAAGAGCCGGTGCTGAGATTCCCGCCGACTTACAAATA
CCAACCAGGGACGCCTTTGTATGAGCGACGGCCGGAGAAGAAATTACGGT
GCCCTGCTTGGTGTGATCGTATCCTGTGGCGTGCAAAGGACCCAAGTCAA
GCACGTTGTTTGACGTACCGGAGGGCGGAACTTTGTTTCTCGGACCATAA
GCCTGTTGCGGCGCAGTTGCAAGCCAAGGTACGGATGGTGGTGAAGGAGA
AGCGGCAAGAGGTGGCAGCAGAAATCCATCGTCTGCTCGACAAACTTGAA
AATGATCAGCATCCGAAGGTCCAAATAGAAGTGCCAGGGGCTGCGGCTTT
GGTCCCGCCGCAACCGCCTAACTCGATTGATTTTGGCCTCGTGCGATATG
GGGTGGAAGTTAGGCAGACATTGGTGGTGACGAATGTGTCGAGTGTGGCA
GCGCAATTTCGCTTCGTTCCCAAGCTGGAGGAGGAGACAATCTGCAAGCA
CTGGTTGAGCATCAAGCCGCGCTTTGGCATGCTTTTGCCGAATGAAGCGG
CTCATATTACGTTCACGGCTTTGATAGACCTTAAGACCGCACAAGCTCTC
AACGCCGGCCAGGACCTTCTTGACGACATCCTAATTTTGCGTCTCGAGAA
CGGACAAGATTTCTTCCTCTCCGTCAACGGCACTTACGCCCGCTCCGCTT
TTGGGATGAGCCTCGAAGAACTCACCAACTGCCACGTACCTGTCCGCTCC
CTTCCCTTGCCCGCAGCAAAGTGGTCGCCTTCCACATCTGCCGCCGCCAC
GGCCGCTGCCTCCAGCAGCAACAGCAAGCAAGCCATCGCTCCCCCTACTT
CGGTGGGTGGCCCCGCACTGTCAATACCCAAGGAATTGTGGCGGCTGGTC
GACGCGCTTTATCGACGGGGGTTGACGGAGAAGGACTTGTTCATTCTGCC
AGGTGCTCCTGGGGAGATGCAGGCCGTGAGAGAGGCGTTGGATGCGGGCG
CCGAGATAGATGAGAAGGCTTCAGTTCACTCTTTGGCTGAGGTGCTTCTG
GCGTTTTTGGCCTCCCTTGCTACCCCTGTTGTGCCCGGTCGCTTGTTGCC
CACTATTGAAATTGACGCTCAAAACCTACGACCGTGGACGAGGCGGTTTT
TGGAGCAGCTTCCGCCGTTGAACTACAATGTGTTTGTGTATTTGATTTCA
TTCTTTCGGGAGGTTCTGAAGTACCATGAGTCGAATAGGCTTAACACAGA
TAAGCTTGCAACCATATGCTGTAAGACTTTGGTTGCCGGAAATGGGTTGT
CATGGGGTAGTGGGGAGGACGCGGCAGCTGGTGGCGTGTTGGACAAGGGC
GGAGGGGAGGACCAGCGCTTGGAGAGCATGCACTTTGTGTTTCAGCATTT
TTTGACAACTAGTGTATTTTAGAATGCTGTGATGTGTGGAAAGGGCTGGA
AAAGGAAGGATGGAGAGGATAAATGTTAATGTAGATATGTTAGTTTAGTT
CATAAGTGCCAGTGGGATAAAAAAGGCACGGCGTCACTGAGAAGCTGGGG
AGATTAGAGAAAGAAAGAAAGAGGCATAGAAAAAACGAAAGCATAACGCT
CGTACTCAAAGATGTCTGGGAGTGTACATCACAACATATTCCCGAGACAT
GCTCAACATTACTTTGGACTAGCAGGCAGAAAAAAGGGTCCAAAATATTG
GCACAATGCTTG

Coding sequence (CDS) from alignment at scaffold_3:659526..662187+

>mRNA_264 ID=mRNA_264|Name=jgi.p|Nanoce1779_2|576752|organism=Nannochloropsis oceanica|type=CDS|length=2355bp|location=Sequence derived from alignment at scaffold_3:659526..662187+ (Nannochloropsis oceanica)
ATGGCTTCTCCCCTTTTGTCCACAGATGATGAACAGGACGTGGAATTTGA
CCCTGCTGCTGTCTCCATCATTCGCCAACACTGGATCGACAAGCAGCTCA
AAAAGCGGGAGCTCGAGTTTACAGAGTATCGGACAGCTACTGTCTTTTGC
GGAACCTACAATGTCAACGCGAAGCTGATTGCGGATGAGGACGTATGGCA
GCTGGAATCCTGGCTTTTTTCAGAAACGGAGAAGCCCGCAGATATTTTCG
CAGTCGGCTTCCAGGAAATCGTTGACCTGAACGCGGTGAACGTGGCCATG
GACGGCAAGTCCCTGCAGCGGGCCCAAGCATGGCAAGAGAAGTTAAGTGC
CGTCCTAAATAACACCAAGGGTAGGGATCGTTATGTCCTTGTGGGGGAAA
AGCACTTGGTGGGCATTTTAATTCTGGTGTTCGCGAAGGAGATGCATTTG
CGAAATATTCGGGAGGTGTACGGCGCGACAGTTGGGGTGGGCTTGATGGG
CATGGCGGGCAATAAAGGGGGAGCTTCAATCCGCCTCAAGTTCTATGATT
CGTACCTGTGTTTTGTGTGCGCGCATTTAGCGGCGCACCGAGAGAATGTA
GAAGGTCGGAATAGCGATTTTGCTAATATTCTGCAGAAGACTGTATTCAT
TGATAAGGCCTTTAGTGGCGAGCCCGGGGCACCGGCGCCTGGGTTGGGGG
ACGCTAGTGAGGAGATGCGCAAATATTTTTCGGAGGTGCTGGAGGTAGAG
CCGACGTTGCAAACCGGTGTGTCCATTTTAGATCACGATGTCGTGTTTTT
TATCGGCGATTTGAATTATCGCTTCGATGAGAGTGTGGATACGGAGGAGT
GCTTTGCCAAAATCGAGGCGCAGGATTTAGAATTTTTGCGGCGATATGAC
CAGCTAAATATGGAGCGAAATCAAGGGAGGGTGTTCGTAGGATTTCAAGA
GCCGGTGCTGAGATTCCCGCCGACTTACAAATACCAACCAGGGACGCCTT
TGTATGAGCGACGGCCGGAGAAGAAATTACGGTGCCCTGCTTGGTGTGAT
CGTATCCTGTGGCGTGCAAAGGACCCAAGTCAAGCACGTTGTTTGACGTA
CCGGAGGGCGGAACTTTGTTTCTCGGACCATAAGCCTGTTGCGGCGCAGT
TGCAAGCCAAGGTACGGATGGTGGTGAAGGAGAAGCGGCAAGAGGTGGCA
GCAGAAATCCATCGTCTGCTCGACAAACTTGAAAATGATCAGCATCCGAA
GGTCCAAATAGAAGTGCCAGGGGCTGCGGCTTTGGTCCCGCCGCAACCGC
CTAACTCGATTGATTTTGGCCTCGTGCGATATGGGGTGGAAGTTAGGCAG
ACATTGGTGGTGACGAATGTGTCGAGTGTGGCAGCGCAATTTCGCTTCGT
TCCCAAGCTGGAGGAGGAGACAATCTGCAAGCACTGGTTGAGCATCAAGC
CGCGCTTTGGCATGCTTTTGCCGAATGAAGCGGCTCATATTACGTTCACG
GCTTTGATAGACCTTAAGACCGCACAAGCTCTCAACGCCGGCCAGGACCT
TCTTGACGACATCCTAATTTTGCGTCTCGAGAACGGACAAGATTTCTTCC
TCTCCGTCAACGGCACTTACGCCCGCTCCGCTTTTGGGATGAGCCTCGAA
GAACTCACCAACTGCCACGTACCTGTCCGCTCCCTTCCCTTGCCCGCAGC
AAAGTGGTCGCCTTCCACATCTGCCGCCGCCACGGCCGCTGCCTCCAGCA
GCAACAGCAAGCAAGCCATCGCTCCCCCTACTTCGGTGGGTGGCCCCGCA
CTGTCAATACCCAAGGAATTGTGGCGGCTGGTCGACGCGCTTTATCGACG
GGGGTTGACGGAGAAGGACTTGTTCATTCTGCCAGGTGCTCCTGGGGAGA
TGCAGGCCGTGAGAGAGGCGTTGGATGCGGGCGCCGAGATAGATGAGAAG
GCTTCAGTTCACTCTTTGGCTGAGGTGCTTCTGGCGTTTTTGGCCTCCCT
TGCTACCCCTGTTGTGCCCGGTCGCTTGTTGCCCACTATTGAAATTGACG
CTCAAAACCTACGACCGTGGACGAGGCGGTTTTTGGAGCAGCTTCCGCCG
TTGAACTACAATGTGTTTGTGTATTTGATTTCATTCTTTCGGGAGGTTCT
GAAGTACCATGAGTCGAATAGGCTTAACACAGATAAGCTTGCAACCATAT
GCTGTAAGACTTTGGTTGCCGGAAATGGGTTGTCATGGGGTAGTGGGGAG
GACGCGGCAGCTGGTGGCGTGTTGGACAAGGGCGGAGGGGAGGACCAGCG
CTTGGAGAGCATGCACTTTGTGTTTCAGCATTTTTTGACAACTAGTGTAT
TTTAG

Synonyms

Publications