jgi.p|Nanoce1779_2|581016, mRNA_2639 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581016
Unique NamemRNA_2639
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1063
Alignment locationscaffold_5:824744..825848 +

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Properties
Property NameValue
TranscriptId581102
TrackFilteredModels2
ProteinId581016
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:824744..825848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581016gene_2639Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581016mRNA_2639-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2639CDS_2639Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2639 ID=mRNA_2639|Name=jgi.p|Nanoce1779_2|581016|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp
TAGGATGCGCCGTACTGCTGCGGCTTCGTGTATGCCCTCCTCGGCGGGGG
GAACGATGTGTGCTGCCATGGGATTTTGGATGATTTTTGGAAGGGGACAG
ACCAAGGTCAATCGTACCGATAGAGAAGAAGGCGCCATCACCATGGGTAG
GAGACGGTTGAGGTGGGGTAGAAAAAGAAGAAAAGGAGGACGAAGAGAAG
GAGGAGGAGGAGGAGGAGGAAAAGGGAGGGGGTGCTGCTGCGGCTGTGGA
GGAGGGGGAGGGCCCTTCTCTTTGGAGGTACGTGGACAGATCGATTCGAT
CAGGGTTCGAAACGCCGCACCCGATTTCGCCGGTAGAGGTGGAGGAAGCA
TGGGCTGGCCCCGGATCAGCAACAGCGAGAGGGGGGGGGCACGAGGAAGG
AGGAATGCTGCTACTGCTGCTACCGCTGCTGCTGTTGTTGGCCCGAACTT
TTTTCCCCAGGAGTCGACGACGCGACGCGGCCGTGGTGGCCATGCTGCTG
CTGGCGCCACTGGTGCTGCTCGTACTGCCGCTATGGCCGCCGCCACCTAA
GGTAAACGTAATCTCAATATCGGTTGGGTGCCGCTGTGATTGTGGTGCTG
CTGCCCCTTGCCGCTTCTCAAGCTCAAGCTCCTCCTCCTCCACCACTACC
ACCTCTTCCTCCTGAGTGTGTTGCCTTCGTCTCTCATCCTCCTCTCCCTC
CTGTAACTGCTGCTGCTGGTGTTGCTTCTGCTGCTCCTCCTGTTGTAAGT
CAAATGTGGGCTTGCTGGGCGTGGAAAAGTGGAATGCCATAGGGGTAGGT
GGGGCAGCAGAAGCAACAGCAGCAGCACAAGCTGCAGAAAATGTGGATCC
AGAAGGGCTGAACGAGTGCTGCTGCTGCTGCTCCAGCTGGTGCTGGATAG
GGTCAGGGAAAGTAAATGACTCGGCGGAGGAAGAGGAAGAAAGAGATTGC
CCTACGTCTTGGAACACTCCTTCCTCTTCCTCCCCCTCTTCCTCCTCCTC
TACCTCGTGGTGCTTGGCAAGAGGCCTGCCGCTGGCTGTAGAATTTGAAT
CCACAGACAAATG
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protein sequence of jgi.p|Nanoce1779_2|581016

>mRNA_2639-protein ID=mRNA_2639-protein|Name=jgi.p|Nanoce1779_2|581016|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MRRTAAASCMPSSAGGTMCAAMGFWMIFGRGQTKVNRTDREEGAITMGRR
RLRWGRKRRKGGRREGGGGGGGKGRGCCCGCGGGGGPFSLEVRGQIDSIR
VRNAAPDFAGRGGGSMGWPRISNSERGGARGRRNAATAATAAAVVGPNFF
PQESTTRRGRGGHAAAGATGAARTAAMAAAT*
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mRNA from alignment at scaffold_5:824744..825848+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2639 ID=mRNA_2639|Name=jgi.p|Nanoce1779_2|581016|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp|location=Sequence derived from alignment at scaffold_5:824744..825848+ (Nannochloropsis oceanica)
TAGGATGCGCCGTACTGCTGCGGCGGCGGCGGCCGCTGCGGCCGCCGCCG
CCGCCGCTGCTGCTGCTTCGTGTATGCCCTCCTCGGCGGGGGGAACGATG
TGTGCTGCCATGGGATTTTGGATGATTTTTGGAAGGGGACAGACCAAGGT
CAATCGTACCGATAGAGAAGAAGGCGCCATCACCATGGGTAGGAGACGGT
TGAGGTGGGGTAGAAAAAGAAGAAAAGGAGGACGAAGAGAAGGAGGAGGA
GGAGGAGGAGGAAAAGGGAGGGGGTGCTGCTGCGGCTGTGGAGGAGGGGG
AGGGCCCTTCTCTTTGGAGGTACGTGGACAGATCGATTCGATCAGGGTTC
GAAACGCCGCACCCGATTTCGCCGGTAGAGGTGGAGGAAGCATGGGCTGG
CCCCGGATCAGCAACAGCGAGAGGGGGGGGGCACGAGGAAGGAGGAATGC
TGCTACTGCTGCTACCGCTGCTGCTGTTGTTGGCCCGAACTTTTTTCCCC
AGGAGTCGACGACGCGACGCGGCCGTGGTGGCCATGCTGCTGCTGGCGCC
ACTGGTGCTGCTCGTACTGCCGCTATGGCCGCCGCCACCTAAGGTAAACG
TAATCTCAATATCGGTTGGGTGCCGCTGTGATTGTGGTGCTGCTGCCCCT
TGCCGCTTCTCAAGCTCAAGCTCCTCCTCCTCCACCACTACCACCTCTTC
CTCCTGAGTGTGTTGCCTTCGTCTCTCATCCTCCTCTCCCTCCTGTAACT
GCTGCTGCTGGTGTTGCTTCTGCTGCTCCTCCTGTTGTAAGTCAAATGTG
GGCTTGCTGGGCGTGGAAAAGTGGAATGCCATAGGGGTAGGTGGGGCAGC
AGAAGCAACAGCAGCAGCACAAGCTGCAGAAAATGTGGATCCAGAAGGGC
TGAACGAGTGCTGCTGCTGCTGCTCCAGCTGGTGCTGGATAGGGTCAGGG
AAAGTAAATGACTCGGCGGAGGAAGAGGAAGAAAGAGATTGCCCTACGTC
TTGGAACACTCCTTCCTCTTCCTCCCCCTCTTCCTCCTCCTCTACCTCGT
GGTGCTTGGCAAGAGGCCTGCCGCTGGCTGTAGAATTTGAATCCACAGAC
AAATG
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Coding sequence (CDS) from alignment at scaffold_5:824744..825848+

>mRNA_2639 ID=mRNA_2639|Name=jgi.p|Nanoce1779_2|581016|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at scaffold_5:824744..825848+ (Nannochloropsis oceanica)
ATGCGCCGTACTGCTGCGGCTTCGTGTATGCCCTCCTCGGCGGGGGGAAC
GATGTGTGCTGCCATGGGATTTTGGATGATTTTTGGAAGGGGACAGACCA
AGGTCAATCGTACCGATAGAGAAGAAGGCGCCATCACCATGGGTAGGAGA
CGGTTGAGGTGGGGTAGAAAAAGAAGAAAAGGAGGACGAAGAGAAGGAGG
AGGAGGAGGAGGAGGAAAAGGGAGGGGGTGCTGCTGCGGCTGTGGAGGAG
GGGGAGGGCCCTTCTCTTTGGAGGTACGTGGACAGATCGATTCGATCAGG
GTTCGAAACGCCGCACCCGATTTCGCCGGTAGAGGTGGAGGAAGCATGGG
CTGGCCCCGGATCAGCAACAGCGAGAGGGGGGGGGCACGAGGAAGGAGGA
ATGCTGCTACTGCTGCTACCGCTGCTGCTGTTGTTGGCCCGAACTTTTTT
CCCCAGGAGTCGACGACGCGACGCGGCCGTGGTGGCCATGCTGCTGCTGG
CGCCACTGGTGCTGCTCGTACTGCCGCTATGGCCGCCGCCACCTAAATGC
GCCGTACTGCTGCGGCTTCGTGTATGCCCTCCTCGGCGGGGGGAACGATG
TGTGCTGCCATGGGATTTTGGATGATTTTTGGAAGGGGACAGACCAAGGT
CAATCGTACCGATAGAGAAGAAGGCGCCATCACCATGGGTAGGAGACGGT
TGAGGTGGGGTAGAAAAAGAAGAAAAGGAGGACGAAGAGAAGGAGGAGGA
GGAGGAGGAGGAAAAGGGAGGGGGTGCTGCTGCGGCTGTGGAGGAGGGGG
AGGGCCCTTCTCTTTGGAGGTACGTGGACAGATCGATTCGATCAGGGTTC
GAAACGCCGCACCCGATTTCGCCGGTAGAGGTGGAGGAAGCATGGGCTGG
CCCCGGATCAGCAACAGCGAGAGGGGGGGGGCACGAGGAAGGAGGAATGC
TGCTACTGCTGCTACCGCTGCTGCTGTTGTTGGCCCGAACTTTTTTCCCC
AGGAGTCGACGACGCGACGCGGCCGTGGTGGCCATGCTGCTGCTGGCGCC
ACTGGTGCTGCTCGTACTGCCGCTATGGCCGCCGCCACCTAA
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Synonyms
Publications