jgi.p|Nanoce1779_2|661907, mRNA_2635 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|661907
Unique Name	mRNA_2635
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1374
Alignment location	scaffold_5:814866..816607 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	661993
Track	FilteredModels2
ProteinId	661907

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:814866..816607 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|661907	gene_2635	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|661907	mRNA_2635-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2635	CDS_2635	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:814866..816607+
coding sequence from alignment at scaffold_5:814866..816607+

mRNA sequence

>mRNA_2635 ID=mRNA_2635|Name=jgi.p|Nanoce1779_2|661907|organism=Nannochloropsis oceanica|type=mRNA|length=1374bp
ATGGACGTGTATGAAGAACTGGTCGAACAAGGGGCATTGCGCGAGGACCC
CGAGCAACGACGGTTGCAACGGAAAGTCCTCCGCGGGTTCTACCTCCACG
GTCAAGTCGGCACAGGAAAGTCCTTGCTAATGGACCTCTTCTTCCACCAC
TGTCCATTACCACGCAAGCGTCGCGTACATTTTCATGCCTTTATGCTAGA
GGTACACGCACGGATTCATGCGTGGAAGCAACGAGCATTAAGGGAGGAAG
GGAGGCAGCGCCATGTTGATCTGAGGCCAGAACGGAATGCAATTATTCAG
ATTGCTAAGGAGATTGGGCAAGAAGCAACCGTTCTCTGTTTCGATGAATT
TCAAGTGACTGACGTGGCTGACGCCATCATCATGAGCAGCCTGTTCGGAG
AGCTCTGGACGGGGTCAGGAGTTGTCGTCATCGCAACCAGCAATCGCGCT
CCCTCGGAGTTGTACATGGATGGATTGAATAGACCCTATTTTTTGCCGTT
TATTGATCTGTTGTGTAGGCAGTGTGTAGTGGAGGACATGGACTCGGAGA
GGGATCACAGGCAGGGCTTTGCGAAATTGAAGGGAAGGTATTTTTATCCA
GGACAGGTGAAGGACGAGGAGGAGGAGGAGGAGAAAGGGGTGGAGGACGA
GGAGGACGTGCAGGTACAAGAGACGTTTAAGGGTCGGCGAGAGGCCGCCC
GGGCGCTTAACAAGGCCTACCTGAAGCTTACCGGAGGGAGGAGGGGGAGG
GCAACGCGGATTCCCGTGATGATGGGGAGGACCTTGCATGTACCTGAAGC
AAGCGAGGATGGGAAGATATGTCGGTTCACATTTGAAGACTTGTGTGCGA
CTCAGGTGTTTGCCGCTGACTACGCGGCTATCACCGAGAGGTTCCAAACG
GTGGTGTTGGAGGGGGTGCCGTTGATGAGTGCGGAGAAGCCCAACGAGGC
CAGGCGGTTCATCACCTTGGTGGACGTGTTGTACGAGAGGAGGATGGCGC
TGTTTATGTCGGCCGAGGTGCCGGTGATGGCTTTGTTTCGACGGACGATG
GGCAAGGGAGAGGAAGGATTGAAGGAAGGGAGGTATTCAACGTGTGTGAA
TATGGGATCACTTGCGGGGGAGACAAGGGTGATAGAAGGAGGGAGGGAGG
GAGGGACTGGTGAGGAGCCGCCGGGAGAAAAAGGTGCTTTCTCCGAGGCA
GATCCATTGTTGCGGCAGTGCGTTGATGCAGCACAGGAGTTGATAGTGCC
AGAGGGAGAGCTGGCGTCGGTAAAGGAATTGGCGTTTGCTTTCAAGAGAG
CGGCTTCGCGGTTGGTGGAGATGGGCAGTGAGGAGTACTTGAGAGAGGGG
GTAGGGAGGGGGAGTGGGCAGTGA

protein sequence of jgi.p|Nanoce1779_2|661907

>mRNA_2635-protein ID=mRNA_2635-protein|Name=jgi.p|Nanoce1779_2|661907|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MDVYEELVEQGALREDPEQRRLQRKVLRGFYLHGQVGTGKSLLMDLFFHH
CPLPRKRRVHFHAFMLEVHARIHAWKQRALREEGRQRHVDLRPERNAIIQ
IAKEIGQEATVLCFDEFQVTDVADAIIMSSLFGELWTGSGVVVIATSNRA
PSELYMDGLNRPYFLPFIDLLCRQCVVEDMDSERDHRQGFAKLKGRYFYP
GQVKDEEEEEEKGVEDEEDVQVQETFKGRREAARALNKAYLKLTGGRRGR
ATRIPVMMGRTLHVPEASEDGKICRFTFEDLCATQVFAADYAAITERFQT
VVLEGVPLMSAEKPNEARRFITLVDVLYERRMALFMSAEVPVMALFRRTM
GKGEEGLKEGRYSTCVNMGSLAGETRVIEGGREGGTGEEPPGEKGAFSEA
DPLLRQCVDAAQELIVPEGELASVKELAFAFKRAASRLVEMGSEEYLREG
VGRGSGQ*

mRNA from alignment at scaffold_5:814866..816607+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2635 ID=mRNA_2635|Name=jgi.p|Nanoce1779_2|661907|organism=Nannochloropsis oceanica|type=mRNA|length=1742bp|location=Sequence derived from alignment at scaffold_5:814866..816607+ (Nannochloropsis oceanica)
ATGGACGTGTATGAAGAACTGGTCGAACAAGGGGCATTGCGCGAGGACCC
CGAGCAACGACGGGTTGCAAAACGCCTAGACAAACTTTCTCGCCTCCTCC
AAACCTATACGCCTCCTGTCAACCTGTTCGCACCATCTGCAGCAGCGACA
GCGCCATCCTTGTCTACTCAGTTGGCGAGCCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCTTCCTC
CTCTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCTCTTTCTCCTTCCC
CTCCTAAGTTGCAACGGAAAGTCCTCCGCGGGTTCTACCTCCACGGTCAA
GTCGGCACAGGAAAGTCCTTGCTAATGGACCTCTTCTTCCACCACTGTCC
ATTACCACGCAAGCGTCGCGTACATTTTCATGCCTTTATGCTAGAGGTAC
ACGCACGGATTCATGCGTGGAAGCAACGAGCATTAAGGGAGGAAGGGAGG
CAGCGCCATGTTGATCTGAGGCCAGAACGGAATGCAATTATTCAGATTGC
TAAGGAGATTGGGTAAGGGAAAACGGGAGAAGGGGAGGGAAGAAAGGGGG
GGAGAGAGTGACAAGATAGCGAGAAGGCAAGCAAGAGACTCACACTAACC
CACGCCCAAATCTTCATTCTTCCACTCGTTTTCAGGCAAGAAGCAACCGT
TCTCTGTTTCGATGAATTTCAAGTGACTGACGTGGCTGACGCCATCATCA
TGAGCAGCCTGTTCGGAGAGCTCTGGACGGGGTCAGGAGTTGTCGTCATC
GCAACCAGCAATCGCGCTCCCTCGGAGTTGTACATGGATGGATTGAATAG
ACCCTATTTTTTGCCGTTTATTGATCTGTTGTGTAGGCAGTGTGTAGTGG
AGGACATGGACTCGGAGAGGGATCACAGGCAGGGCTTTGCGAAATTGAAG
GGAAGGTATTTTTATCCAGGACAGGTGAAGGACGAGGAGGAGGAGGAGGA
GAAAGGGGTGGAGGACGAGGAGGACGTGCAGGTACAAGAGACGTTTAAGG
GTCGGCGAGAGGCCGCCCGGGCGCTTAACAAGGCCTACCTGAAGCTTACC
GGAGGGAGGAGGGGGAGGGCAACGCGGATTCCCGTGATGATGGGGAGGAC
CTTGCATGTACCTGAAGCAAGCGAGGATGGGAAGATATGTCGGTTCACAT
TTGAAGACTTGTGTGCGACTCAGGTGTTTGCCGCTGACTACGCGGCTATC
ACCGAGAGGTTCCAAACGGTGGTGTTGGAGGGGGTGCCGTTGATGAGTGC
GGAGAAGCCCAACGAGGCCAGGCGGTTCATCACCTTGGTGGACGTGTTGT
ACGAGAGGAGGATGGCGCTGTTTATGTCGGCCGAGGTGCCGGTGATGGCT
TTGTTTCGACGGACGATGGGCAAGGGAGAGGAAGGATTGAAGGAAGGGAG
GTATTCAACGTGTGTGAATATGGGATCACTTGCGGGGGAGACAAGGGTGA
TAGAAGGAGGGAGGGAGGGAGGGACTGGTGAGGAGCCGCCGGGAGAAAAA
GGTGCTTTCTCCGAGGCAGATCCATTGTTGCGGCAGTGCGTTGATGCAGC
ACAGGAGTTGATAGTGCCAGAGGGAGAGCTGGCGTCGGTAAAGGAATTGG
CGTTTGCTTTCAAGAGAGCGGCTTCGCGGTTGGTGGAGATGGGCAGTGAG
GAGTACTTGAGAGAGGGGGTAGGGAGGGGGAGTGGGCAGTGA

Coding sequence (CDS) from alignment at scaffold_5:814866..816607+

>mRNA_2635 ID=mRNA_2635|Name=jgi.p|Nanoce1779_2|661907|organism=Nannochloropsis oceanica|type=CDS|length=4122bp|location=Sequence derived from alignment at scaffold_5:814866..816607+ (Nannochloropsis oceanica)
ATGGACGTGTATGAAGAACTGGTCGAACAAGGGGCATTGCGCGAGGACCC
CGAGCAACGACGGTTGCAACGGAAAGTCCTCCGCGGGTTCTACCTCCACG
GTCAAGTCGGCACAGGAAAGTCCTTGCTAATGGACCTCTTCTTCCACCAC
TGTCCATTACCACGCAAGCGTCGCGTACATTTTCATGCCTTTATGCTAGA
GGTACACGCACGGATTCATGCGTGGAAGCAACGAGCATTAAGGGAGGAAG
GGAGGCAGCGCCATGTTGATCTGAGGCCAGAACGGAATGCAATTATTCAG
ATTGCTAAGGAGATTGGGCAAGAAGCAACCGTTCTCTGTTTCGATGAATT
TCAAGTGACTGACGTGGCTGACGCCATCATCATGAGCAGCCTGTTCGGAG
AGCTCTGGACGGGGTCAGGAGTTGTCGTCATCGCAACCAGCAATCGCGCT
CCCTCGGAGTTGTACATGGATGGATTGAATAGACCCTATTTTTTGCCGTT
TATTGATCTGTTGTGTAGGCAGTGTGTAGTGGAGGACATGGACTCGGAGA
GGGATCACAGGCAGGGCTTTGCGAAATTGAAGGGAAGGTATTTTTATCCA
GGACAGGTGAAGGACGAGGAGGAGGAGGAGGAGAAAGGGGTGGAGGACGA
GGAGGACGTGCAGGTACAAGAGACGTTTAAGGGTCGGCGAGAGGCCGCCC
GGGCGCTTAACAAGGCCTACCTGAAGCTTACCGGAGGGAGGAGGGGGAGG
GCAACGCGGATTCCCGTGATGATGGGGAGGACCTTGCATGTACCTGAAGC
AAGCGAGGATGGGAAGATATGTCGGTTCACATTTGAAGACTTGTGTGCGA
CTCAGGTGTTTGCCGCTGACTACGCGGCTATCACCGAGAGGTTCCAAACG
GTGGTGTTGGAGGGGGTGCCGTTGATGAGTGCGGAGAAGCCCAACGAGGC
CAGGCGGTTCATCACCTTGGTGGACGTGTTGTACGAGAGGAGGATGGCGC
TGTTTATGTCGGCCGAGGTGCCGGTGATGGCTTTGTTTCGACGGACGATG
GGCAAGGGAGAGGAAGGATTGAAGGAAGGGAGGTATTCAACGTGTGTGAA
TATGGGATCACTTGCGGGGGAGACAAGGGTGATAGAAGGAGGGAGGGAGG
GAGGGACTGGTGAGGAGCCGCCGGGAGAAAAAGGTGCTTTCTCCGAGGCA
GATCCATTGTTGCGGCAGTGCGTTGATGCAGCACAGGAGTTGATAGTGCC
AGAGGGAGAGCTGGCGTCGGTAAAGGAATTGGCGTTTGCTTTCAAGAGAG
CGGCTTCGCGGTTGGTGGAGATGGGCAGTGAGGAGTACTTGAGAGAGGGG
GTAGGGAGGGGGAGTGGGCAGTGAATGGACGTGTATGAAGAACTGGTCGA
ACAAGGGGCATTGCGCGAGGACCCCGAGCAACGACGGTTGCAACGGAAAG
TCCTCCGCGGGTTCTACCTCCACGGTCAAGTCGGCACAGGAAAGTCCTTG
CTAATGGACCTCTTCTTCCACCACTGTCCATTACCACGCAAGCGTCGCGT
ACATTTTCATGCCTTTATGCTAGAGGTACACGCACGGATTCATGCGTGGA
AGCAACGAGCATTAAGGGAGGAAGGGAGGCAGCGCCATGTTGATCTGAGG
CCAGAACGGAATGCAATTATTCAGATTGCTAAGGAGATTGGGCAAGAAGC
AACCGTTCTCTGTTTCGATGAATTTCAAGTGACTGACGTGGCTGACGCCA
TCATCATGAGCAGCCTGTTCGGAGAGCTCTGGACGGGGTCAGGAGTTGTC
GTCATCGCAACCAGCAATCGCGCTCCCTCGGAGTTGTACATGGATGGATT
GAATAGACCCTATTTTTTGCCGTTTATTGATCTGTTGTGTAGGCAGTGTG
TAGTGGAGGACATGGACTCGGAGAGGGATCACAGGCAGGGCTTTGCGAAA
TTGAAGGGAAGGTATTTTTATCCAGGACAGGTGAAGGACGAGGAGGAGGA
GGAGGAGAAAGGGGTGGAGGACGAGGAGGACGTGCAGGTACAAGAGACGT
TTAAGGGTCGGCGAGAGGCCGCCCGGGCGCTTAACAAGGCCTACCTGAAG
CTTACCGGAGGGAGGAGGGGGAGGGCAACGCGGATTCCCGTGATGATGGG
GAGGACCTTGCATGTACCTGAAGCAAGCGAGGATGGGAAGATATGTCGGT
TCACATTTGAAGACTTGTGTGCGACTCAGGTGTTTGCCGCTGACTACGCG
GCTATCACCGAGAGGTTCCAAACGGTGGTGTTGGAGGGGGTGCCGTTGAT
GAGTGCGGAGAAGCCCAACGAGGCCAGGCGGTTCATCACCTTGGTGGACG
TGTTGTACGAGAGGAGGATGGCGCTGTTTATGTCGGCCGAGGTGCCGGTG
ATGGCTTTGTTTCGACGGACGATGGGCAAGGGAGAGGAAGGATTGAAGGA
AGGGAGGTATTCAACGTGTGTGAATATGGGATCACTTGCGGGGGAGACAA
GGGTGATAGAAGGAGGGAGGGAGGGAGGGACTGGTGAGGAGCCGCCGGGA
GAAAAAGGTGCTTTCTCCGAGGCAGATCCATTGTTGCGGCAGTGCGTTGA
TGCAGCACAGGAGTTGATAGTGCCAGAGGGAGAGCTGGCGTCGGTAAAGG
AATTGGCGTTTGCTTTCAAGAGAGCGGCTTCGCGGTTGGTGGAGATGGGC
AGTGAGGAGTACTTGAGAGAGGGGGTAGGGAGGGGGAGTGGGCAGTGAAT
GGACGTGTATGAAGAACTGGTCGAACAAGGGGCATTGCGCGAGGACCCCG
AGCAACGACGGTTGCAACGGAAAGTCCTCCGCGGGTTCTACCTCCACGGT
CAAGTCGGCACAGGAAAGTCCTTGCTAATGGACCTCTTCTTCCACCACTG
TCCATTACCACGCAAGCGTCGCGTACATTTTCATGCCTTTATGCTAGAGG
TACACGCACGGATTCATGCGTGGAAGCAACGAGCATTAAGGGAGGAAGGG
AGGCAGCGCCATGTTGATCTGAGGCCAGAACGGAATGCAATTATTCAGAT
TGCTAAGGAGATTGGGCAAGAAGCAACCGTTCTCTGTTTCGATGAATTTC
AAGTGACTGACGTGGCTGACGCCATCATCATGAGCAGCCTGTTCGGAGAG
CTCTGGACGGGGTCAGGAGTTGTCGTCATCGCAACCAGCAATCGCGCTCC
CTCGGAGTTGTACATGGATGGATTGAATAGACCCTATTTTTTGCCGTTTA
TTGATCTGTTGTGTAGGCAGTGTGTAGTGGAGGACATGGACTCGGAGAGG
GATCACAGGCAGGGCTTTGCGAAATTGAAGGGAAGGTATTTTTATCCAGG
ACAGGTGAAGGACGAGGAGGAGGAGGAGGAGAAAGGGGTGGAGGACGAGG
AGGACGTGCAGGTACAAGAGACGTTTAAGGGTCGGCGAGAGGCCGCCCGG
GCGCTTAACAAGGCCTACCTGAAGCTTACCGGAGGGAGGAGGGGGAGGGC
AACGCGGATTCCCGTGATGATGGGGAGGACCTTGCATGTACCTGAAGCAA
GCGAGGATGGGAAGATATGTCGGTTCACATTTGAAGACTTGTGTGCGACT
CAGGTGTTTGCCGCTGACTACGCGGCTATCACCGAGAGGTTCCAAACGGT
GGTGTTGGAGGGGGTGCCGTTGATGAGTGCGGAGAAGCCCAACGAGGCCA
GGCGGTTCATCACCTTGGTGGACGTGTTGTACGAGAGGAGGATGGCGCTG
TTTATGTCGGCCGAGGTGCCGGTGATGGCTTTGTTTCGACGGACGATGGG
CAAGGGAGAGGAAGGATTGAAGGAAGGGAGGTATTCAACGTGTGTGAATA
TGGGATCACTTGCGGGGGAGACAAGGGTGATAGAAGGAGGGAGGGAGGGA
GGGACTGGTGAGGAGCCGCCGGGAGAAAAAGGTGCTTTCTCCGAGGCAGA
TCCATTGTTGCGGCAGTGCGTTGATGCAGCACAGGAGTTGATAGTGCCAG
AGGGAGAGCTGGCGTCGGTAAAGGAATTGGCGTTTGCTTTCAAGAGAGCG
GCTTCGCGGTTGGTGGAGATGGGCAGTGAGGAGTACTTGAGAGAGGGGGT
AGGGAGGGGGAGTGGGCAGTGA

Synonyms

Publications