jgi.p|Nanoce1779_2|580998, mRNA_2632 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580998
Unique NamemRNA_2632
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length548
Alignment locationscaffold_5:811381..811928 -

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Properties
Property NameValue
TranscriptId581084
TrackFilteredModels2
ProteinId580998
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:811381..811928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580998gene_2632Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580998mRNA_2632-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2632CDS_2632Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2632 ID=mRNA_2632|Name=jgi.p|Nanoce1779_2|580998|organism=Nannochloropsis oceanica|type=mRNA|length=548bp
ATGGCATTTACATTCTCCAACCTCCTCAAAGCAGGGGCTGTACATCGTCC
CAAGACCTTTGCCGTCCTGTACGTAGTGATGGAGTGGATTCTCTCTTTTC
CCTCCCTCTTCTTCTCTATTTATCCCCCGACTTCAGTTAGTCTTGATGGC
CAAAATTGCTTTTCTTGCAGGGACATGGCAGATTTTCTGAATCTCAGACC
CATATATTATATCACCCCACAACCCGCCCCTATTCGGGGAAAGATTTGCA
AAGCCCTTGCTAAAACCTCTCATCCATTTTCCCACGCCTCCATTTTTTAT
TTATTTTTCCTTTTCTCCCCCATTGCGGGAATATATCTCCCATCTGACAC
ACACTTTGTCTCATGACACGCCACTCTATTCGCTCAGCATCTCAGTGAAT
GTGTGTCACCCGTGATAATGCCCATGGATACGGTTTGCTTGCATTTTACA
TCGTCACTCATCCCCTCCCTTTCTTCCTATATTCCACCCTTTTTTCTAGA
CGAGTATGGATGCTGTTTTCCCTCTACTATGGCGTGGACCTCACCCGT
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protein sequence of jgi.p|Nanoce1779_2|580998

>mRNA_2632-protein ID=mRNA_2632-protein|Name=jgi.p|Nanoce1779_2|580998|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MAFTFSNLLKAGAVHRPKTFAVLYVVMEWILSFPSLFFSIYPPTSVSLDG
QNCFSCRDMADFLNLRPIYYITPQPAPIRGKICKALAKTSHPFSHASIFY
LFFLFSPIAGIYLPSDTHFVS*
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mRNA from alignment at scaffold_5:811381..811928-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2632 ID=mRNA_2632|Name=jgi.p|Nanoce1779_2|580998|organism=Nannochloropsis oceanica|type=mRNA|length=548bp|location=Sequence derived from alignment at scaffold_5:811381..811928- (Nannochloropsis oceanica)
ATGGCATTTACATTCTCCAACCTCCTCAAAGCAGGGGCTGTACATCGTCC
CAAGACCTTTGCCGTCCTGTACGTAGTGATGGAGTGGATTCTCTCTTTTC
CCTCCCTCTTCTTCTCTATTTATCCCCCGACTTCAGTTAGTCTTGATGGC
CAAAATTGCTTTTCTTGCAGGGACATGGCAGATTTTCTGAATCTCAGACC
CATATATTATATCACCCCACAACCCGCCCCTATTCGGGGAAAGATTTGCA
AAGCCCTTGCTAAAACCTCTCATCCATTTTCCCACGCCTCCATTTTTTAT
TTATTTTTCCTTTTCTCCCCCATTGCGGGAATATATCTCCCATCTGACAC
ACACTTTGTCTCATGACACGCCACTCTATTCGCTCAGCATCTCAGTGAAT
GTGTGTCACCCGTGATAATGCCCATGGATACGGTTTGCTTGCATTTTACA
TCGTCACTCATCCCCTCCCTTTCTTCCTATATTCCACCCTTTTTTCTAGA
CGAGTATGGATGCTGTTTTCCCTCTACTATGGCGTGGACCTCACCCGT
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Coding sequence (CDS) from alignment at scaffold_5:811381..811928-

>mRNA_2632 ID=mRNA_2632|Name=jgi.p|Nanoce1779_2|580998|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_5:811381..811928- (Nannochloropsis oceanica)
ATGGCATTTACATTCTCCAACCTCCTCAAAGCAGGGGCTGTACATCGTCC
CAAGACCTTTGCCGTCCTGTACGTAGTGATGGAGTGGATTCTCTCTTTTC
CCTCCCTCTTCTTCTCTATTTATCCCCCGACTTCAGTTAGTCTTGATGGC
CAAAATTGCTTTTCTTGCAGGGACATGGCAGATTTTCTGAATCTCAGACC
CATATATTATATCACCCCACAACCCGCCCCTATTCGGGGAAAGATTTGCA
AAGCCCTTGCTAAAACCTCTCATCCATTTTCCCACGCCTCCATTTTTTAT
TTATTTTTCCTTTTCTCCCCCATTGCGGGAATATATCTCCCATCTGACAC
ACACTTTGTCTCATGA
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Synonyms
Publications