jgi.p|Nanoce1779_2|334587, mRNA_2631 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|334587
Unique Name	mRNA_2631
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2480
Alignment location	scaffold_5:809212..811691 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	334673
Track	FilteredModels2
ProteinId	334587

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:809212..811691 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|334587	gene_2631	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|334587	mRNA_2631-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2631	CDS_2631	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:809212..811691-
coding sequence from alignment at scaffold_5:809212..811691-

mRNA sequence

>mRNA_2631 ID=mRNA_2631|Name=jgi.p|Nanoce1779_2|334587|organism=Nannochloropsis oceanica|type=mRNA|length=2480bp
GGAAAGATTTGCAAAGCCCTTGCTAAAACCTCTCATCCATTTTCCCACGC
CTCCATTTTTTATTTATTTTTCCTTTTCTCCCCCATTGCGGGAATATATC
TCCCATCTGACACACACTTTGTCTCATGACACGCCACTCTATTCGCTCAG
CATCTCAGTGAATGTGTGTCACCCGTGATAATGCCCATGGATACGGTTTG
CTTGCATTTTACATCGTCACTCATCCCCTCCCTTTCTTCCTATATTCCAC
CCTTTTTTCTAGACGAGTATGGATGCTGTTTTCCCTCTACTATGGCGTGG
ACCTCACCCGTGGATTCCTCTCTGTGGCCCTGGCCCTGATGGATGCCACT
GTCCAGGACCTTCAACGCTTACCAGACATGATGGTCGAGGCCCCCATGGC
TCTTCCCACCGGTGACCTGTCTTCCGGCACCCTCCCCGCTACCAGGTCCT
CCTCTTCGGCCTCTGACACGATCAGCGGCAGTACTCTCAGCGGCGGCGAA
GGGGATGGTACTGCTGCTGCTGCACCTGCTGCTGCACCTGCTGCTGCTCC
TGCTGAGTCAGCGCCGTCGTCGTCAGCGCCATCGTCAACGACGGGCTCGG
CTCCTCTTGACCCGGCGGTGCTGCAGCCTTTCATTGCCTCCCTTGATGAT
GGTGTTAGTGCAGTGATTTGCTGTGTGGGCTGCAGGGGGGGGACGGGGAA
AGTCTATTGTAATGCAAAATTCAAATCGACGTTTTTCTCGTCTGAGGACC
TAACGTATAGGACACTGAATGAGAGCACTTTGCCTGTGTATGTGTATGCC
TGTATCATCGCGCCGGAGGACCGGGCGGAGTTTGTCGATTCTTTGACCAA
TGTGTGTTTTGGGACGCAGACGGCCTTGCCACAAGTGACGCATATAGTGA
AGGTGCTGGACAGGCACGGGAATGACTTCTTGGCGATAGTACGGTTGAGG
TGCTTAACATTGAACAATGGGGATTACGGTGCGGATATTCTGACCATCGA
GCCAGCGCCCACGTCCAAGTACGTGTTGCAGACAAGTGAAATTGTTGGAG
GGCTGGGGGGAGGAAAAGGTGAGGAGGGGGAGCAGAAGAGGGGGGGGAGT
GGGGTGGCGAGTGCGACGAGCAGTGTGGATGGAGGGGGAAGTTCAGATGG
GGTGACGAGTATTAGTGGTCCGGGTTCCAACGGCCCTAATGTGTCGGGCC
AAAAGAATGCTGGGGGAGGCGGGAAGGGAGCCGGGAGAGGGGATGCAGCA
GCCGGGGGATCGAAGAGAGGGAGAAAAGCAGCGAACACGGCGAGGCCTTT
GCCGCAGCAGACGGCGTCGCCGGCGGTGGTTGGACCTTTGCCAGATTCGC
CGCAGGTACCACCAATGAATGAGGGGGGAGGGGGAGGGTCGTGGGCGACA
TTGCCTGGATATGGTGCGTATGGAGGTGGGGGATGCCTGTCAGGAGGCAT
GATGGGAGGGATGGGAGGAGTGTTGGGAGGAGTGATGGGGGGGGGAAGAG
GGGGAGGGGAAATGCAGCCTGGTATGCCGCCAGGGGCAATGCCGACGGGA
GGAATAGGGCTTGCGAGAGGAGGAGAGGTGAGAGGGAGTAATAATGGGCG
GAAAAGGTCGCACCCGGAGGACAACGGAGGTGAAGGTGGAGGGCGGATGG
AAGGTCCTGGGCCCTCCACTCCTTTTGGGGGCATGATACCTGCTCCGCGT
GGTGGTGGTAGTGGAGGAGAAGAAGGAGGAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGGAGGGTATGATCATCCGCGGCAAGCGATGGGTGCTGGCTCAA
TTAAGCCAGGGGTCTTTCCCGGCTTTCCTGGCGGTGGGGGAGGCGTGGCG
GGAGGGATGGGGGGAATGACAGGCTCCCTCCCTTCTGGCGTTCCGATGAA
TCATACCCGCGCATACTCGATAGCGCAGCAGCACCAGCATCAGCACCAAC
AACCTCAGCATCAGCAGCAACATGTACCACAACAGCAGCAGTGGCAGCAC
CAGCAGCAATGGCAGCAGCAACATCAATGGCAGCAACAACAGCAGCAACA
TATGTATCAACAGCAGCAGCTTCAGCAACAGCAGATGGCACAGCAGCAGC
AGCAGCAGCAGCATCAGCAGCAGCAACTGTGGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCCGCCGCCTTATCCGTAACCAGGTGTACCTTG
AATGTTACGTGGGGTGGAAATGGGGGAGGGCTAGGGCAAATACTGTACCG
AATATCACCCGACCAGAATAAAATTCAACAGGAGATGAGAGGGTGAACAA
GGAATTATGACACGAGGGCCCGCAACACCCAAAGCGAGCGAGGTTAAGCA
AGGGAATTGCAAAAATGAGATGTAAAAGGAAAGAGCATCAAAAACAGGGA
GGGTAGAAGGACGAGACGGAGTCTTTAGAGCAAAAGAATGAGGCTGATGA
TAACCATCAACCACAAATGTATCAAATGAC

protein sequence of jgi.p|Nanoce1779_2|334587

>mRNA_2631-protein ID=mRNA_2631-protein|Name=jgi.p|Nanoce1779_2|334587|organism=Nannochloropsis oceanica|type=polypeptide|length=675bp
MCVTRDNAHGYGLLAFYIVTHPLPFFLYSTLFSRRVWMLFSLYYGVDLTR
GFLSVALALMDATVQDLQRLPDMMVEAPMALPTGDLSSGTLPATRSSSSA
SDTISGSTLSGGEGDGTAAAAPAAAPAAAPAESAPSSSAPSSTTGSAPLD
PAVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNAKFKSTFFSSEDLTYR
TLNESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLD
RHGNDFLAIVRLRCLTLNNGDYGADILTIEPAPTSKYVLQTSEIVGGLGG
GKGEEGEQKRGGSGVASATSSVDGGGSSDGVTSISGPGSNGPNVSGQKNA
GGGGKGAGRGDAAAGGSKRGRKAANTARPLPQQTASPAVVGPLPDSPQVP
PMNEGGGGGSWATLPGYGAYGGGGCLSGGMMGGMGGVLGGVMGGGRGGGE
MQPGMPPGAMPTGGIGLARGGEVRGSNNGRKRSHPEDNGGEGGGRMEGPG
PSTPFGGMIPAPRGGGSGGEEGGAGAGAGAGAGGYDHPRQAMGAGSIKPG
VFPGFPGGGGGVAGGMGGMTGSLPSGVPMNHTRAYSIAQQHQHQHQQPQH
QQQHVPQQQQWQHQQQWQQQHQWQQQQQQHMYQQQQLQQQQMAQQQQQQQ
HQQQQLWQQQQQQQQQQQQPPPYP*

mRNA from alignment at scaffold_5:809212..811691-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2631 ID=mRNA_2631|Name=jgi.p|Nanoce1779_2|334587|organism=Nannochloropsis oceanica|type=mRNA|length=2480bp|location=Sequence derived from alignment at scaffold_5:809212..811691- (Nannochloropsis oceanica)
GGAAAGATTTGCAAAGCCCTTGCTAAAACCTCTCATCCATTTTCCCACGC
CTCCATTTTTTATTTATTTTTCCTTTTCTCCCCCATTGCGGGAATATATC
TCCCATCTGACACACACTTTGTCTCATGACACGCCACTCTATTCGCTCAG
CATCTCAGTGAATGTGTGTCACCCGTGATAATGCCCATGGATACGGTTTG
CTTGCATTTTACATCGTCACTCATCCCCTCCCTTTCTTCCTATATTCCAC
CCTTTTTTCTAGACGAGTATGGATGCTGTTTTCCCTCTACTATGGCGTGG
ACCTCACCCGTGGATTCCTCTCTGTGGCCCTGGCCCTGATGGATGCCACT
GTCCAGGACCTTCAACGCTTACCAGACATGATGGTCGAGGCCCCCATGGC
TCTTCCCACCGGTGACCTGTCTTCCGGCACCCTCCCCGCTACCAGGTCCT
CCTCTTCGGCCTCTGACACGATCAGCGGCAGTACTCTCAGCGGCGGCGAA
GGGGATGGTACTGCTGCTGCTGCACCTGCTGCTGCACCTGCTGCTGCTCC
TGCTGAGTCAGCGCCGTCGTCGTCAGCGCCATCGTCAACGACGGGCTCGG
CTCCTCTTGACCCGGCGGTGCTGCAGCCTTTCATTGCCTCCCTTGATGAT
GGTGTTAGTGCAGTGATTTGCTGTGTGGGCTGCAGGGGGGGGACGGGGAA
AGTCTATTGTAATGCAAAATTCAAATCGACGTTTTTCTCGTCTGAGGACC
TAACGTATAGGACACTGAATGAGAGCACTTTGCCTGTGTATGTGTATGCC
TGTATCATCGCGCCGGAGGACCGGGCGGAGTTTGTCGATTCTTTGACCAA
TGTGTGTTTTGGGACGCAGACGGCCTTGCCACAAGTGACGCATATAGTGA
AGGTGCTGGACAGGCACGGGAATGACTTCTTGGCGATAGTACGGTTGAGG
TGCTTAACATTGAACAATGGGGATTACGGTGCGGATATTCTGACCATCGA
GCCAGCGCCCACGTCCAAGTACGTGTTGCAGACAAGTGAAATTGTTGGAG
GGCTGGGGGGAGGAAAAGGTGAGGAGGGGGAGCAGAAGAGGGGGGGGAGT
GGGGTGGCGAGTGCGACGAGCAGTGTGGATGGAGGGGGAAGTTCAGATGG
GGTGACGAGTATTAGTGGTCCGGGTTCCAACGGCCCTAATGTGTCGGGCC
AAAAGAATGCTGGGGGAGGCGGGAAGGGAGCCGGGAGAGGGGATGCAGCA
GCCGGGGGATCGAAGAGAGGGAGAAAAGCAGCGAACACGGCGAGGCCTTT
GCCGCAGCAGACGGCGTCGCCGGCGGTGGTTGGACCTTTGCCAGATTCGC
CGCAGGTACCACCAATGAATGAGGGGGGAGGGGGAGGGTCGTGGGCGACA
TTGCCTGGATATGGTGCGTATGGAGGTGGGGGATGCCTGTCAGGAGGCAT
GATGGGAGGGATGGGAGGAGTGTTGGGAGGAGTGATGGGGGGGGGAAGAG
GGGGAGGGGAAATGCAGCCTGGTATGCCGCCAGGGGCAATGCCGACGGGA
GGAATAGGGCTTGCGAGAGGAGGAGAGGTGAGAGGGAGTAATAATGGGCG
GAAAAGGTCGCACCCGGAGGACAACGGAGGTGAAGGTGGAGGGCGGATGG
AAGGTCCTGGGCCCTCCACTCCTTTTGGGGGCATGATACCTGCTCCGCGT
GGTGGTGGTAGTGGAGGAGAAGAAGGAGGAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGGAGGGTATGATCATCCGCGGCAAGCGATGGGTGCTGGCTCAA
TTAAGCCAGGGGTCTTTCCCGGCTTTCCTGGCGGTGGGGGAGGCGTGGCG
GGAGGGATGGGGGGAATGACAGGCTCCCTCCCTTCTGGCGTTCCGATGAA
TCATACCCGCGCATACTCGATAGCGCAGCAGCACCAGCATCAGCACCAAC
AACCTCAGCATCAGCAGCAACATGTACCACAACAGCAGCAGTGGCAGCAC
CAGCAGCAATGGCAGCAGCAACATCAATGGCAGCAACAACAGCAGCAACA
TATGTATCAACAGCAGCAGCTTCAGCAACAGCAGATGGCACAGCAGCAGC
AGCAGCAGCAGCATCAGCAGCAGCAACTGTGGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCCGCCGCCTTATCCGTAACCAGGTGTACCTTG
AATGTTACGTGGGGTGGAAATGGGGGAGGGCTAGGGCAAATACTGTACCG
AATATCACCCGACCAGAATAAAATTCAACAGGAGATGAGAGGGTGAACAA
GGAATTATGACACGAGGGCCCGCAACACCCAAAGCGAGCGAGGTTAAGCA
AGGGAATTGCAAAAATGAGATGTAAAAGGAAAGAGCATCAAAAACAGGGA
GGGTAGAAGGACGAGACGGAGTCTTTAGAGCAAAAGAATGAGGCTGATGA
TAACCATCAACCACAAATGTATCAAATGAC

Coding sequence (CDS) from alignment at scaffold_5:809212..811691-

>mRNA_2631 ID=mRNA_2631|Name=jgi.p|Nanoce1779_2|334587|organism=Nannochloropsis oceanica|type=CDS|length=2025bp|location=Sequence derived from alignment at scaffold_5:809212..811691- (Nannochloropsis oceanica)
ATGTGTGTCACCCGTGATAATGCCCATGGATACGGTTTGCTTGCATTTTA
CATCGTCACTCATCCCCTCCCTTTCTTCCTATATTCCACCCTTTTTTCTA
GACGAGTATGGATGCTGTTTTCCCTCTACTATGGCGTGGACCTCACCCGT
GGATTCCTCTCTGTGGCCCTGGCCCTGATGGATGCCACTGTCCAGGACCT
TCAACGCTTACCAGACATGATGGTCGAGGCCCCCATGGCTCTTCCCACCG
GTGACCTGTCTTCCGGCACCCTCCCCGCTACCAGGTCCTCCTCTTCGGCC
TCTGACACGATCAGCGGCAGTACTCTCAGCGGCGGCGAAGGGGATGGTAC
TGCTGCTGCTGCACCTGCTGCTGCACCTGCTGCTGCTCCTGCTGAGTCAG
CGCCGTCGTCGTCAGCGCCATCGTCAACGACGGGCTCGGCTCCTCTTGAC
CCGGCGGTGCTGCAGCCTTTCATTGCCTCCCTTGATGATGGTGTTAGTGC
AGTGATTTGCTGTGTGGGCTGCAGGGGGGGGACGGGGAAAGTCTATTGTA
ATGCAAAATTCAAATCGACGTTTTTCTCGTCTGAGGACCTAACGTATAGG
ACACTGAATGAGAGCACTTTGCCTGTGTATGTGTATGCCTGTATCATCGC
GCCGGAGGACCGGGCGGAGTTTGTCGATTCTTTGACCAATGTGTGTTTTG
GGACGCAGACGGCCTTGCCACAAGTGACGCATATAGTGAAGGTGCTGGAC
AGGCACGGGAATGACTTCTTGGCGATAGTACGGTTGAGGTGCTTAACATT
GAACAATGGGGATTACGGTGCGGATATTCTGACCATCGAGCCAGCGCCCA
CGTCCAAGTACGTGTTGCAGACAAGTGAAATTGTTGGAGGGCTGGGGGGA
GGAAAAGGTGAGGAGGGGGAGCAGAAGAGGGGGGGGAGTGGGGTGGCGAG
TGCGACGAGCAGTGTGGATGGAGGGGGAAGTTCAGATGGGGTGACGAGTA
TTAGTGGTCCGGGTTCCAACGGCCCTAATGTGTCGGGCCAAAAGAATGCT
GGGGGAGGCGGGAAGGGAGCCGGGAGAGGGGATGCAGCAGCCGGGGGATC
GAAGAGAGGGAGAAAAGCAGCGAACACGGCGAGGCCTTTGCCGCAGCAGA
CGGCGTCGCCGGCGGTGGTTGGACCTTTGCCAGATTCGCCGCAGGTACCA
CCAATGAATGAGGGGGGAGGGGGAGGGTCGTGGGCGACATTGCCTGGATA
TGGTGCGTATGGAGGTGGGGGATGCCTGTCAGGAGGCATGATGGGAGGGA
TGGGAGGAGTGTTGGGAGGAGTGATGGGGGGGGGAAGAGGGGGAGGGGAA
ATGCAGCCTGGTATGCCGCCAGGGGCAATGCCGACGGGAGGAATAGGGCT
TGCGAGAGGAGGAGAGGTGAGAGGGAGTAATAATGGGCGGAAAAGGTCGC
ACCCGGAGGACAACGGAGGTGAAGGTGGAGGGCGGATGGAAGGTCCTGGG
CCCTCCACTCCTTTTGGGGGCATGATACCTGCTCCGCGTGGTGGTGGTAG
TGGAGGAGAAGAAGGAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAG
GGTATGATCATCCGCGGCAAGCGATGGGTGCTGGCTCAATTAAGCCAGGG
GTCTTTCCCGGCTTTCCTGGCGGTGGGGGAGGCGTGGCGGGAGGGATGGG
GGGAATGACAGGCTCCCTCCCTTCTGGCGTTCCGATGAATCATACCCGCG
CATACTCGATAGCGCAGCAGCACCAGCATCAGCACCAACAACCTCAGCAT
CAGCAGCAACATGTACCACAACAGCAGCAGTGGCAGCACCAGCAGCAATG
GCAGCAGCAACATCAATGGCAGCAACAACAGCAGCAACATATGTATCAAC
AGCAGCAGCTTCAGCAACAGCAGATGGCACAGCAGCAGCAGCAGCAGCAG
CATCAGCAGCAGCAACTGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCCGCCGCCTTATCCGTAA

Synonyms

Publications