jgi.p|Nanoce1779_2|580990, mRNA_2630 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580990
Unique Name	mRNA_2630
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	933
Alignment location	scaffold_5:807997..808929 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581076
Track	FilteredModels2
ProteinId	580990

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:807997..808929 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580990	gene_2630	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580990	mRNA_2630-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2630	CDS_2630	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:807997..808929+
coding sequence from alignment at scaffold_5:807997..808929+

mRNA sequence

>mRNA_2630 ID=mRNA_2630|Name=jgi.p|Nanoce1779_2|580990|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ACAGGCAAGGACAGGGAATAGAGGAGAAAGGCAAGACAGCAACAGTTCGG
TGTGCTGGATTGAGGCTGACCGCACCGTCACGGAGACCTCAAAGGACCAG
ACTCGACCTCCTATCCCTAAAGGTATTATGGCCATTCCAATACAATACGC
CAAACAGACTTGCATCATTGCCAATGTAGTCTCCTGCATCCTTTCCGCTT
TTGCTCTCATTCTCTCCTACAAAGGCCTGCACCTATACCGGCAACAACAA
GACCCCTCATCTTGTCCTCTTGGTGTCCTGCTCCTTGGCGTCCTGCCCGC
CAAAGCCGTGTCCCTCAGTTTATTCCCCGCGATCTCACTAGGATGGGTGG
CCCTTGCCATTTATCTCGCCCAACCACAGCTTAAAGGACTGGAGGGCAAA
ATCATAGACAATGGCACTTTTGCCAATATTCAACGGCAGTGTGGCACGGT
AATGCATCGTGTCAATGTAGGACGGATGCTCTGTAGCGTGTTTTCAGTGT
TATTTTTGTGGCGTATGAGTATTTTTTACAAGCAACTGGACGAAACCGAG
GACGGGAAGGAGGAGGATCAGTTTTGGTTTGGGTATACTATGCTCATGAC
GGGCTTTGGGCTGTTGGCGGCGCTGTTGAACACGCTGCTGTACCATCGAT
TGCAGGTGTCAAACAGAAATTTGAAGCAAGCATTGAAACTGCGGTTTCGA
CGAACACTGTAGCACTGTCGCCAGCAACCACTGAATTTAAATAAATCAAC
AAATAACTTAGAGTAATAGGAGGATTGAGAGATCATCAGGCTACGTCGTG
CTCGTAAAAGTAAGTAGGGGGCAAACATTGCACGTACCATAGGCGCACAT
TTCCCCCAATGGAAGAGGAATAGAAACCAAAACAAAAGGAGAGCTTGGAA
AAAAAAAGTTATAGCAAACATGTTTCTCCGGGG

protein sequence of jgi.p|Nanoce1779_2|580990

>mRNA_2630-protein ID=mRNA_2630-protein|Name=jgi.p|Nanoce1779_2|580990|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MAIPIQYAKQTCIIANVVSCILSAFALILSYKGLHLYRQQQDPSSCPLGV
LLLGVLPAKAVSLSLFPAISLGWVALAIYLAQPQLKGLEGKIIDNGTFAN
IQRQCGTVMHRVNVGRMLCSVFSVLFLWRMSIFYKQLDETEDGKEEDQFW
FGYTMLMTGFGLLAALLNTLLYHRLQVSNRNLKQALKLRFRRTL*

mRNA from alignment at scaffold_5:807997..808929+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2630 ID=mRNA_2630|Name=jgi.p|Nanoce1779_2|580990|organism=Nannochloropsis oceanica|type=mRNA|length=933bp|location=Sequence derived from alignment at scaffold_5:807997..808929+ (Nannochloropsis oceanica)
ACAGGCAAGGACAGGGAATAGAGGAGAAAGGCAAGACAGCAACAGTTCGG
TGTGCTGGATTGAGGCTGACCGCACCGTCACGGAGACCTCAAAGGACCAG
ACTCGACCTCCTATCCCTAAAGGTATTATGGCCATTCCAATACAATACGC
CAAACAGACTTGCATCATTGCCAATGTAGTCTCCTGCATCCTTTCCGCTT
TTGCTCTCATTCTCTCCTACAAAGGCCTGCACCTATACCGGCAACAACAA
GACCCCTCATCTTGTCCTCTTGGTGTCCTGCTCCTTGGCGTCCTGCCCGC
CAAAGCCGTGTCCCTCAGTTTATTCCCCGCGATCTCACTAGGATGGGTGG
CCCTTGCCATTTATCTCGCCCAACCACAGCTTAAAGGACTGGAGGGCAAA
ATCATAGACAATGGCACTTTTGCCAATATTCAACGGCAGTGTGGCACGGT
AATGCATCGTGTCAATGTAGGACGGATGCTCTGTAGCGTGTTTTCAGTGT
TATTTTTGTGGCGTATGAGTATTTTTTACAAGCAACTGGACGAAACCGAG
GACGGGAAGGAGGAGGATCAGTTTTGGTTTGGGTATACTATGCTCATGAC
GGGCTTTGGGCTGTTGGCGGCGCTGTTGAACACGCTGCTGTACCATCGAT
TGCAGGTGTCAAACAGAAATTTGAAGCAAGCATTGAAACTGCGGTTTCGA
CGAACACTGTAGCACTGTCGCCAGCAACCACTGAATTTAAATAAATCAAC
AAATAACTTAGAGTAATAGGAGGATTGAGAGATCATCAGGCTACGTCGTG
CTCGTAAAAGTAAGTAGGGGGCAAACATTGCACGTACCATAGGCGCACAT
TTCCCCCAATGGAAGAGGAATAGAAACCAAAACAAAAGGAGAGCTTGGAA
AAAAAAAGTTATAGCAAACATGTTTCTCCGGGG

Coding sequence (CDS) from alignment at scaffold_5:807997..808929+

>mRNA_2630 ID=mRNA_2630|Name=jgi.p|Nanoce1779_2|580990|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_5:807997..808929+ (Nannochloropsis oceanica)
ATGGCCATTCCAATACAATACGCCAAACAGACTTGCATCATTGCCAATGT
AGTCTCCTGCATCCTTTCCGCTTTTGCTCTCATTCTCTCCTACAAAGGCC
TGCACCTATACCGGCAACAACAAGACCCCTCATCTTGTCCTCTTGGTGTC
CTGCTCCTTGGCGTCCTGCCCGCCAAAGCCGTGTCCCTCAGTTTATTCCC
CGCGATCTCACTAGGATGGGTGGCCCTTGCCATTTATCTCGCCCAACCAC
AGCTTAAAGGACTGGAGGGCAAAATCATAGACAATGGCACTTTTGCCAAT
ATTCAACGGCAGTGTGGCACGGTAATGCATCGTGTCAATGTAGGACGGAT
GCTCTGTAGCGTGTTTTCAGTGTTATTTTTGTGGCGTATGAGTATTTTTT
ACAAGCAACTGGACGAAACCGAGGACGGGAAGGAGGAGGATCAGTTTTGG
TTTGGGTATACTATGCTCATGACGGGCTTTGGGCTGTTGGCGGCGCTGTT
GAACACGCTGCTGTACCATCGATTGCAGGTGTCAAACAGAAATTTGAAGC
AAGCATTGAAACTGCGGTTTCGACGAACACTGTAG

Synonyms

Publications