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Properties
| Property Name | Value |
|---|
| TranscriptId | 576833 |
| Track | FilteredModels2 |
| ProteinId | 576747 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:656181..658542 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_263 ID=mRNA_263|Name=jgi.p|Nanoce1779_2|576747|organism=Nannochloropsis oceanica|type=mRNA|length=2142bp
ACAGGGCGTCGTGCCAATAACGAAAAACGATGCGCACCCTCAGCATCTTG
GTATCCTTGCCACTGGTCTCGGCCGGCTTCTGGGGAGTCGGCCGCAACCA
GCAGGCTTTTGTAATGGGACCCAGCACCTACTCCCCGTCAACAGTAGTCC
GCAGCCAACAGCAGGCCACGTCCCGGATGGTGGTCCAGAGCAGCAGCAGC
AGCAATAGAAGCAGACCGCAGCTTTGGCGTCTGAGGATGAGCGAGGATGC
GGATGTGGAGGCGCCCGTGGCTGAGGCAGTTGCAGTGGAAGAAACTGAGG
CACCTGCAGGAGAAGGTGACGTTGACGTAGCATCTAAGGAGGCCAAGAAG
CCTAAGGAGAAGCGCACGCCCTTGTCGGCGTTGGCCCAAGGTGCGGAGTT
TACGGGCAAGGTGAAGGGGATTAAGGAGTTCGGGATCTTTGTCGACATCG
GCGCGGAGAGCGACGGCCTTGTGCACATCTCTCAAATGTCGTCAACATTT
GTTTCAAGTCCTTCCGACTTGGCTGCTGTTGGAGACACGGTAACGGTGCG
TGTGCTGAATGTCGATGCAGTCAAGCGTCAAGTTGCCTTGACCATGAAGA
CTGAGGCGGAAGCCAACGCCCCCCGGCCAAAGCGCCAGCAAAAGAGGCGC
GAGCGCGATGATGACGCGGGAGATGACGACCAAGAGGAGGGTGAGGACTC
GTTGAAGGACGCTCCGGTTGGGGATAAGGACGTCAGTGCTTTTCAGAATT
ATGACCCCAAGAAGTTTTTGAGCGGGACCGTGGCATCTGTGCAGGCTTAT
GGTGCTTTCATTCGTCTGGATGACGCAGAGATGGATGGATTATTGCCCAC
AGGCGATATGGATGGGAAGCTGGAGAGCGGGCAGCGAGTGCAGGTCCGCA
TCACGGACGTAGATATGGAGCGTAACCGCATTACCTTGTCCAATCTGCCT
TTGTTGCGGGGGAAGCGCACGCGTTTTGCGTTGAACAAGGAGGAGAACGA
TGAGCTTGCGGTGATTGCCGCCAGGTCAGGTTTGTATGCATCCGAGCTGC
CGGAGATTTATGAGGGGGCGGACGATGATGCTGAGTGGGAGGCTGCCTTC
GCCTTCAAGGGTTTTGATGACGGGGCTGCGGATGGGGTGGTGGAAGAGGA
TACGGGGGGGCCGGAGGTGGTGTTTGGCGAGGAGCCTGAGGAGGACGACG
AGGAGTTTAGCATGAGCTCAATTAATGTCTTCAGGTCGCCGGCGTACAAG
AAGGAGAGGGGCTTGATGGCGGATGACGACGAGGATGCGGAGGAAGGGTT
CAAGTATGGAGGGGAGGCTTACTTCCCCGAGGACGATGAGGACGAGGACG
CGACTTTGGGTGCGTTTACTAAGCAGTACGACACGCAGATTCCTCAGTTG
AGCGAGGATGAGCTGAAGGCTTTGATTCGTAAGGCTCAGGGGACTCGGCG
TAATGTTACCGAGGAGTGGGCGGAGGAGGAGGCGGAAGAGAGGGAGTACC
TGAGTCTCAATCTGGTGCCGTCCAAGAAGCAAAAGATGTCGTTGACCATG
AAAACGGTACAGCCGATGCAGGCGGACGCAGTGATGAGCAAGCCGCGCAT
GCCCATCTATTTTTCGAAGAAGTTGTCGGCTGTGCAGCAGGTGGACTTGC
TGGAGGAGCTTGAGAAGCTCGTCAATGACGATCCATTGGCACTGGTCAAG
TAAAGGGGGAAGACAAAAGGGAGAAAAACTAGAGTAGGTGGAAGGCGAAG
AAGAACAAGGTAACAGTTCATGGGCCCGAGAGAGGACGGGAATGGTAGGG
TGCGCGAGGGAGGGACAACAGAGAATGGCAACGAAACCCACGGGGAGGAA
AGACGTAATCGCAGGACAAGAATGGGGAGGAGACGTGGGAAAAGAATGAG
AAGCTGGGAAGGAAAAGGGCTTGTCCTGCCAGGGGAGGAAAATACACAAC
TTTATACATACGTATCTAGTATCGACAAACTTTTAATCTATACGCACCGA
CCCCTTGTGCCTCTGCCTGTGTGCGAGGAGCTATAGAAAAATGGGCGAGT
GCAGATGAAGGAGGAGAAAAAGATGAAAGAGATGCATGCATGCGAGACCC
CGTAAACAACTTCGAAAAGAATCACAACGGAACAGTGACGAA back to topprotein sequence of jgi.p|Nanoce1779_2|576747 >mRNA_263-protein ID=mRNA_263-protein|Name=jgi.p|Nanoce1779_2|576747|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MRTLSILVSLPLVSAGFWGVGRNQQAFVMGPSTYSPSTVVRSQQQATSRM
VVQSSSSSNRSRPQLWRLRMSEDADVEAPVAEAVAVEETEAPAGEGDVDV
ASKEAKKPKEKRTPLSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHI
SQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEAEANAPRP
KRQQKRRERDDDAGDDDQEEGEDSLKDAPVGDKDVSAFQNYDPKKFLSGT
VASVQAYGAFIRLDDAEMDGLLPTGDMDGKLESGQRVQVRITDVDMERNR
ITLSNLPLLRGKRTRFALNKEENDELAVIAARSGLYASELPEIYEGADDD
AEWEAAFAFKGFDDGAADGVVEEDTGGPEVVFGEEPEEDDEEFSMSSINV
FRSPAYKKERGLMADDDEDAEEGFKYGGEAYFPEDDEDEDATLGAFTKQY
DTQIPQLSEDELKALIRKAQGTRRNVTEEWAEEEAEEREYLSLNLVPSKK
QKMSLTMKTVQPMQADAVMSKPRMPIYFSKKLSAVQQVDLLEELEKLVND
DPLALVK* back to topmRNA from alignment at scaffold_3:656181..658542- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_263 ID=mRNA_263|Name=jgi.p|Nanoce1779_2|576747|organism=Nannochloropsis oceanica|type=mRNA|length=2362bp|location=Sequence derived from alignment at scaffold_3:656181..658542- (Nannochloropsis oceanica)
ACAGGGCGTCGTGCCAATAACGAAAAACGATGCGCACCCTCAGCATCTTG
GTATCCTTGCCACTGGTCTCGGCCGGCTTCTGGGGAGGTGAGTGAACTCA
AAGTCCACGCTGATGGGTGGAAGTGGAAGGGGTACGACTGAACAACGTTG
ATACAGGATCCCTCCTGACCGCAGACATATGACGCGAGCTCCTCGTTTGC
ATCTCTGTACGCACTAGACGTCAACACTGAAGCCACAAATTAGACGTTTA
ATATCTCAATCATTGTTTCCCAATCCAACTCACCGCCACCCTCATACAAA
ATCTCAGTCGGCCGCAACCAGCAGGCTTTTGTAATGGGACCCAGCACCTA
CTCCCCGTCAACAGTAGTCCGCAGCCAACAGCAGGCCACGTCCCGGATGG
TGGTCCAGAGCAGCAGCAGCAGCAATAGAAGCAGACCGCAGCTTTGGCGT
CTGAGGATGAGCGAGGATGCGGATGTGGAGGCGCCCGTGGCTGAGGCAGT
TGCAGTGGAAGAAACTGAGGCACCTGCAGGAGAAGGTGACGTTGACGTAG
CATCTAAGGAGGCCAAGAAGCCTAAGGAGAAGCGCACGCCCTTGTCGGCG
TTGGCCCAAGGTGCGGAGTTTACGGGCAAGGTGAAGGGGATTAAGGAGTT
CGGGATCTTTGTCGACATCGGCGCGGAGAGCGACGGCCTTGTGCACATCT
CTCAAATGTCGTCAACATTTGTTTCAAGTCCTTCCGACTTGGCTGCTGTT
GGAGACACGGTAACGGTGCGTGTGCTGAATGTCGATGCAGTCAAGCGTCA
AGTTGCCTTGACCATGAAGACTGAGGCGGAAGCCAACGCCCCCCGGCCAA
AGCGCCAGCAAAAGAGGCGCGAGCGCGATGATGACGCGGGAGATGACGAC
CAAGAGGAGGGTGAGGACTCGTTGAAGGACGCTCCGGTTGGGGATAAGGA
CGTCAGTGCTTTTCAGAATTATGACCCCAAGAAGTTTTTGAGCGGGACCG
TGGCATCTGTGCAGGCTTATGGTGCTTTCATTCGTCTGGATGACGCAGAG
ATGGATGGATTATTGCCCACAGGCGATATGGATGGGAAGCTGGAGAGCGG
GCAGCGAGTGCAGGTCCGCATCACGGACGTAGATATGGAGCGTAACCGCA
TTACCTTGTCCAATCTGCCTTTGTTGCGGGGGAAGCGCACGCGTTTTGCG
TTGAACAAGGAGGAGAACGATGAGCTTGCGGTGATTGCCGCCAGGTCAGG
TTTGTATGCATCCGAGCTGCCGGAGATTTATGAGGGGGCGGACGATGATG
CTGAGTGGGAGGCTGCCTTCGCCTTCAAGGGTTTTGATGACGGGGCTGCG
GATGGGGTGGTGGAAGAGGATACGGGGGGGCCGGAGGTGGTGTTTGGCGA
GGAGCCTGAGGAGGACGACGAGGAGTTTAGCATGAGCTCAATTAATGTCT
TCAGGTCGCCGGCGTACAAGAAGGAGAGGGGCTTGATGGCGGATGACGAC
GAGGATGCGGAGGAAGGGTTCAAGTATGGAGGGGAGGCTTACTTCCCCGA
GGACGATGAGGACGAGGACGCGACTTTGGGTGCGTTTACTAAGCAGTACG
ACACGCAGATTCCTCAGTTGAGCGAGGATGAGCTGAAGGCTTTGATTCGT
AAGGCTCAGGGGACTCGGCGTAATGTTACCGAGGAGTGGGCGGAGGAGGA
GGCGGAAGAGAGGGAGTACCTGAGTCTCAATCTGGTGCCGTCCAAGAAGC
AAAAGATGTCGTTGACCATGAAAACGGTACAGCCGATGCAGGCGGACGCA
GTGATGAGCAAGCCGCGCATGCCCATCTATTTTTCGAAGAAGTTGTCGGC
TGTGCAGCAGGTGGACTTGCTGGAGGAGCTTGAGAAGCTCGTCAATGACG
ATCCATTGGCACTGGTCAAGTAAAGGGGGAAGACAAAAGGGAGAAAAACT
AGAGTAGGTGGAAGGCGAAGAAGAACAAGGTAACAGTTCATGGGCCCGAG
AGAGGACGGGAATGGTAGGGTGCGCGAGGGAGGGACAACAGAGAATGGCA
ACGAAACCCACGGGGAGGAAAGACGTAATCGCAGGACAAGAATGGGGAGG
AGACGTGGGAAAAGAATGAGAAGCTGGGAAGGAAAAGGGCTTGTCCTGCC
AGGGGAGGAAAATACACAACTTTATACATACGTATCTAGTATCGACAAAC
TTTTAATCTATACGCACCGACCCCTTGTGCCTCTGCCTGTGTGCGAGGAG
CTATAGAAAAATGGGCGAGTGCAGATGAAGGAGGAGAAAAAGATGAAAGA
GATGCATGCATGCGAGACCCCGTAAACAACTTCGAAAAGAATCACAACGG
AACAGTGACGAA back to topCoding sequence (CDS) from alignment at scaffold_3:656181..658542- >mRNA_263 ID=mRNA_263|Name=jgi.p|Nanoce1779_2|576747|organism=Nannochloropsis oceanica|type=CDS|length=3348bp|location=Sequence derived from alignment at scaffold_3:656181..658542- (Nannochloropsis oceanica)
TCGGCCGCAACCAGCAGGCTTTTGTAATGGGACCCAGCACCTACTCCCCG
TCAACAGTAGTCCGCAGCCAACAGCAGGCCACGTCCCGGATGGTGGTCCA
GAGCAGCAGCAGCAGCAATAGAAGCAGACCGCAGCTTTGGCGTCTGAGGA
TGAGCGAGGATGCGGATGTGGAGGCGCCCGTGGCTGAGGCAGTTGCAGTG
GAAGAAACTGAGGCACCTGCAGGAGAAGGTGACGTTGACGTAGCATCTAA
GGAGGCCAAGAAGCCTAAGGAGAAGCGCACGCCCTTGTCGGCGTTGGCCC
AAGGTGCGGAGTTTACGGGCAAGGTGAAGGGGATTAAGGAGTTCGGGATC
TTTGTCGACATCGGCGCGGAGAGCGACGGCCTTGTGCACATCTCTCAAAT
GTCGTCAACATTTGTTTCAAGTCCTTCCGACTTGGCTGCTGTTGGAGACA
CGGTAACGGTGCGTGTGCTGAATGTCGATGCAGTCAAGCGTCAAGTTGCC
TTGACCATGAAGACTGAGGCGGAAGCCAACGCCCCCCGGCCAAAGCGCCA
GCAAAAGAGGCGCGAGCGCGATGATGACGCGGGAGATGACGACCAAGAGG
AGGGTGAGGACTCGTTGAAGGACGCTCCGGTTGGGGATAAGGACGTCAGT
GCTTTTCAGAATTATGACCCCAAGAAGTTTTTGAGCGGGACCGTGGCATC
TGTGCAGGCTTATGGTGCTTTCATTCGTCTGGATGACGCAGAGATGGATG
GATTATTGCCCACAGGCGATATGGATGGGAAGCTGGAGAGCGGGCAGCGA
GTGCAGGTCCGCATCACGGACGTAGATATGGAGCGTAACCGCATTACCTT
GTCCAATCTGCCTTTGTTGCGGGGGAAGCGCACGCGTTTTGCGTTGAACA
AGGAGGAGAACGATGAGCTTGCGGTGATTGCCGCCAGGTCAGGTTTGTAT
GCATCCGAGCTGCCGGAGATTTATGAGGGGGCGGACGATGATGCTGAGTG
GGAGGCTGCCTTCGCCTTCAAGGGTTTTGATGACGGGGCTGCGGATGGGG
TGGTGGAAGAGGATACGGGGGGGCCGGAGGTGGTGTTTGGCGAGGAGCCT
GAGGAGGACGACGAGGAGTTTAGCATGAGCTCAATTAATGTCTTCAGGTC
GCCGGCGTACAAGAAGGAGAGGGGCTTGATGGCGGATGACGACGAGGATG
CGGAGGAAGGGTTCAAGTATGGAGGGGAGGCTTACTTCCCCGAGGACGAT
GAGGACGAGGACGCGACTTTGGGTGCGTTTACTAAGCAGTACGACACGCA
GATTCCTCAGTTGAGCGAGGATGAGCTGAAGGCTTTGATTCGTAAGGCTC
AGGGGACTCGGCGTAATGTTACCGAGGAGTGGGCGGAGGAGGAGGCGGAA
GAGAGGGAGTACCTGAGTCTCAATCTGGTGCCGTCCAAGAAGCAAAAGAT
GTCGTTGACCATGAAAACGGTACAGCCGATGCAGGCGGACGCAGTGATGA
GCAAGCCGCGCATGCCCATCTATTTTTCGAAGAAGTTGTCGGCTGTGCAG
CAGGTGGACTTGCTGGAGGAGCTTGAGAAGCTCGTCAATGACGATCCATT
GGCACTGGTCAAGTAAATGCGCACCCTCAGCATCTTGGTATCCTTGCCAC
TGGTCTCGGCCGGCTTCTGGGGAGTCGGCCGCAACCAGCAGGCTTTTGTA
ATGGGACCCAGCACCTACTCCCCGTCAACAGTAGTCCGCAGCCAACAGCA
GGCCACGTCCCGGATGGTGGTCCAGAGCAGCAGCAGCAGCAATAGAAGCA
GACCGCAGCTTTGGCGTCTGAGGATGAGCGAGGATGCGGATGTGGAGGCG
CCCGTGGCTGAGGCAGTTGCAGTGGAAGAAACTGAGGCACCTGCAGGAGA
AGGTGACGTTGACGTAGCATCTAAGGAGGCCAAGAAGCCTAAGGAGAAGC
GCACGCCCTTGTCGGCGTTGGCCCAAGGTGCGGAGTTTACGGGCAAGGTG
AAGGGGATTAAGGAGTTCGGGATCTTTGTCGACATCGGCGCGGAGAGCGA
CGGCCTTGTGCACATCTCTCAAATGTCGTCAACATTTGTTTCAAGTCCTT
CCGACTTGGCTGCTGTTGGAGACACGGTAACGGTGCGTGTGCTGAATGTC
GATGCAGTCAAGCGTCAAGTTGCCTTGACCATGAAGACTGAGGCGGAAGC
CAACGCCCCCCGGCCAAAGCGCCAGCAAAAGAGGCGCGAGCGCGATGATG
ACGCGGGAGATGACGACCAAGAGGAGGGTGAGGACTCGTTGAAGGACGCT
CCGGTTGGGGATAAGGACGTCAGTGCTTTTCAGAATTATGACCCCAAGAA
GTTTTTGAGCGGGACCGTGGCATCTGTGCAGGCTTATGGTGCTTTCATTC
GTCTGGATGACGCAGAGATGGATGGATTATTGCCCACAGGCGATATGGAT
GGGAAGCTGGAGAGCGGGCAGCGAGTGCAGGTCCGCATCACGGACGTAGA
TATGGAGCGTAACCGCATTACCTTGTCCAATCTGCCTTTGTTGCGGGGGA
AGCGCACGCGTTTTGCGTTGAACAAGGAGGAGAACGATGAGCTTGCGGTG
ATTGCCGCCAGGTCAGGTTTGTATGCATCCGAGCTGCCGGAGATTTATGA
GGGGGCGGACGATGATGCTGAGTGGGAGGCTGCCTTCGCCTTCAAGGGTT
TTGATGACGGGGCTGCGGATGGGGTGGTGGAAGAGGATACGGGGGGGCCG
GAGGTGGTGTTTGGCGAGGAGCCTGAGGAGGACGACGAGGAGTTTAGCAT
GAGCTCAATTAATGTCTTCAGGTCGCCGGCGTACAAGAAGGAGAGGGGCT
TGATGGCGGATGACGACGAGGATGCGGAGGAAGGGTTCAAGTATGGAGGG
GAGGCTTACTTCCCCGAGGACGATGAGGACGAGGACGCGACTTTGGGTGC
GTTTACTAAGCAGTACGACACGCAGATTCCTCAGTTGAGCGAGGATGAGC
TGAAGGCTTTGATTCGTAAGGCTCAGGGGACTCGGCGTAATGTTACCGAG
GAGTGGGCGGAGGAGGAGGCGGAAGAGAGGGAGTACCTGAGTCTCAATCT
GGTGCCGTCCAAGAAGCAAAAGATGTCGTTGACCATGAAAACGGTACAGC
CGATGCAGGCGGACGCAGTGATGAGCAAGCCGCGCATGCCCATCTATTTT
TCGAAGAAGTTGTCGGCTGTGCAGCAGGTGGACTTGCTGGAGGAGCTTGA
GAAGCTCGTCAATGACGATCCATTGGCACTGGTCAAGTAAATGCGCACCC
TCAGCATCTTGGTATCCTTGCCACTGGTCTCGGCCGGCTTCTGGGGAG back to top
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