jgi.p|Nanoce1779_2|580984, mRNA_2629 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580984
Unique Name	mRNA_2629
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1632
Alignment location	scaffold_5:803740..805528 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581070
Track	FilteredModels2
ProteinId	580984

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:803740..805528 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580984	gene_2629	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580984	mRNA_2629-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2629	CDS_2629	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:803740..805528+
coding sequence from alignment at scaffold_5:803740..805528+

mRNA sequence

>mRNA_2629 ID=mRNA_2629|Name=jgi.p|Nanoce1779_2|580984|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp
AGACATTGATAATAATTAGTAGCATGGACAGGCCGCGCCAGCGGCGATGC
CAATGCCTGTTTGCGGCTTTCCTGCCCCTTTTCCTCCTCCAGCCTCCTCT
AGTCCACGCCTACACTCCCGGAACAAAGCCATGGAGCCTCATAGTGGCAA
GCAAGGCACCGACAACAGCTAAACTCCCGTCCAAAGCCTCCATGAGTAGC
AGCAGCGGCAAGCCAAATCCTCTTTCGACGCTCTTGGAGGTTTACACCCG
CGACGATAGCTCACGTGAGAGCGTACAAATCAGCCCTGAGGAAGCCCGCC
TAAAGAAGGACAGGCAGTACACCTTGCTAACAGGGCTCCCTCTCAAGCCC
TACTTCGAACGACGGACGGTTCGAACACAAGTGGCAGAGAATATTTGGAC
GTTTGAGCAGCCTCAGGGTTTCTTCAATGTGACCACCCCCATTCGAATGA
CTGTGATACGACTGGCCGATGGCCGGCTGTGGGTGCACGCCCCCGTGGCC
GCCACGAGAGAGTGCCGGCGTCTCCTCGATGAGCTTGGGGGGGAAATTGC
GTACATTATTCTCCCCACAACAGCCTTTGAACACAAGGTCTTTGTCGGCG
GCTTTGCAAGGGCGTACCCGAAAGCGAAAGTGTGGGTATGTCCCGGGCAA
TGGGCCTGGCCCGTCAACCTGCCCCCTCCCTTTCGCGTCGATGGCTACCT
CTCAGACGACGATGATTCAAGCCGGAGCAGGAAACCCATGCCTTGGGCAA
ACGAAATCGAGCAATTCGTCCTTCAACCCCCTTGCATCGGCATTGGGCCT
GCCAACGAGGTCGTCTTCTTCCACAAATCCACTAAAACCCTCTTGGTCAC
AGACCTCGTGGTGTACATCGATGGCCAGTCCCCCTCCCCCGTCGTGGATA
TTCCCGACCTTCTCAAAGCTTCGTACGACGACCCTGATGCGGTGCCAAGC
ATCACCCCTGTACCGCCCAACACAGAAGCTAACCGTCGAAAGGGCTGGGC
GAGGATGGCACTCCAAATCCTCTTCCTCGGCCCCACCCGTTTCTCCACCT
TCAAGCTCGTCGAACGCCGCCTGCTAGTCTCTCCCGTCATTGAGACATTC
GTTTACTCCAAAGTGCCCGAGGCTCTCGTCGAGTTTGTGGAACGCGTGGC
TCTAAGGTGGAAGTTCACTTCTATTATCCCGGCTCATTTTAATGCGCCCG
CTCCCGCTTCCCCCCGGGCGTTGCAGAGAGCCTTTGCATTTGCCTATGAT
TTGACAGGAAGGACGCCCGCAAAGTTGGGGGGGGGCGACAGGGGAGGATA
TAGTCCGTTGTTGGAGTTTTGGGAGAGGGTTGTGGGGGGAGGAGGAAGGG
AAGGGGGAGGAAGTGCAACGAAGTACCCTGAGGATGATATGGCGGTGTTG
CGGTTTGTGAATGGATTTATTTTGAAAGCGGGGATTGCAAGGAAGTAGGT
CCACAGATAATGCCACTAAGCTCTGAATGAAAGGCGGTTGGATGGCCGGA
TAGGGAGAGGGGAAAGGGATCATTTTGGCGGTTGGGATGCGGGGTGTTTT
TGGGATGCGGAGATGGGTGTGAAGGTAAGTGAGAATGTGTGGGTAGGATT
ATCAGTAAATAGGTAAAATAGAGTATATATAA

protein sequence of jgi.p|Nanoce1779_2|580984

>mRNA_2629-protein ID=mRNA_2629-protein|Name=jgi.p|Nanoce1779_2|580984|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MDRPRQRRCQCLFAAFLPLFLLQPPLVHAYTPGTKPWSLIVASKAPTTAK
LPSKASMSSSSGKPNPLSTLLEVYTRDDSSRESVQISPEEARLKKDRQYT
LLTGLPLKPYFERRTVRTQVAENIWTFEQPQGFFNVTTPIRMTVIRLADG
RLWVHAPVAATRECRRLLDELGGEIAYIILPTTAFEHKVFVGGFARAYPK
AKVWVCPGQWAWPVNLPPPFRVDGYLSDDDDSSRSRKPMPWANEIEQFVL
QPPCIGIGPANEVVFFHKSTKTLLVTDLVVYIDGQSPSPVVDIPDLLKAS
YDDPDAVPSITPVPPNTEANRRKGWARMALQILFLGPTRFSTFKLVERRL
LVSPVIETFVYSKVPEALVEFVERVALRWKFTSIIPAHFNAPAPASPRAL
QRAFAFAYDLTGRTPAKLGGGDRGGYSPLLEFWERVVGGGGREGGGSATK
YPEDDMAVLRFVNGFILKAGIARK*

mRNA from alignment at scaffold_5:803740..805528+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2629 ID=mRNA_2629|Name=jgi.p|Nanoce1779_2|580984|organism=Nannochloropsis oceanica|type=mRNA|length=1789bp|location=Sequence derived from alignment at scaffold_5:803740..805528+ (Nannochloropsis oceanica)
AGACATTGATAATAATTAGTAGCATGGACAGGCCGCGCCAGCGGCGATGC
CAATGCCTGTTTGCGGCTTTCCTGCCCCTTTTCCTCCTCCAGCCTCCTCT
AGTCCACGCCTACACTCCCGGAACAAAGCCATGGAGCCTCATAGTGGCAA
GCAAGGCACCGACAACAGCTAAACTCCCGTCCAAAGCCTCCATGAGTAGC
AGCAGCGGCAAGCCAAATCCTCTTTCGACGCTCTTGGAGGTTTACACCCG
CGACGATAGCTCACGTGAGAGCGTACAAATCAGCCCTGAGGAAGCCCGCC
TAAAGAAGGACAGGCAGTACACCTTGCTAACAGGGCTCCCTCTCAAGCCC
TACTTCGAACGACGGACGGTTCGAACACAAGTGGCAGAGAATATTTGGAC
GTTTGAGCAGCCTCAGGGTTTCTTCAATGTGACCACCCCCATTCGAATGA
CTGTGATACGACTGGCCGATGGCCGGCTGTGGGTGCACGCCCCCGTGGCC
GCCACGAGAGAGTGCCGGCGTCTCCTCGATGAGCTTGGGGGGGAAATTGC
GTACATTATTCTCCCCACAACAGCCTTTGAACACAAGGTCTTTGTCGGCG
GCTTTGCAAGGGCGTACCCGAAAGCGAAAGTGTGGGTATGTCCCGGGCAA
TGGGCCTGGCCCGTCAACCTGCCCCCTCCCTTTCGCGTCGATGGCTACCT
CTCAGACGACGATGATTCAAGCCGGAGCAGGAAACCCATGCCTTGGGCAA
ACGAAATCGAGCAATTCGTCCTTCAACCCCCTTGCATCGGCATTGGGCCT
GCCAACGAGGTCGTCTTCTTCCACAAATCCACTAAAACCCTCTTGGTCAC
AGACCTCGTGGTGTACATCGATGGCCAGTCCCCCTCCCCCGTCGTGGATA
TTCCCGACCTTCTCAAAGCTTCGTACGACGACCCTGATGCGGTGCCAAGC
ATCACCCCTGTACCGCCCAACACAGAAGCTAACCGTCGAAAGGGCTGGGC
GAGGATGGCACTCCAAATCCTCTTCCTCGGTACTTCCCTTCCCTCATCAC
TCCTTCTCCCTCTCCGCTCCCTCGCCACCTTCTATCCCTATGTAACGATT
AGAGTTATACATTCCTCTCCTTTCATGCCGTCTCGAATCCGCTTACGCTT
CTTCTTCCTTCCCTCTCTCCTTTCCCCCATCTGCAGGCCCCACCCGTTTC
TCCACCTTCAAGCTCGTCGAACGCCGCCTGCTAGTCTCTCCCGTCATTGA
GACATTCGTTTACTCCAAAGTGCCCGAGGCTCTCGTCGAGTTTGTGGAAC
GCGTGGCTCTAAGGTGGAAGTTCACTTCTATTATCCCGGCTCATTTTAAT
GCGCCCGCTCCCGCTTCCCCCCGGGCGTTGCAGAGAGCCTTTGCATTTGC
CTATGATTTGACAGGAAGGACGCCCGCAAAGTTGGGGGGGGGCGACAGGG
GAGGATATAGTCCGTTGTTGGAGTTTTGGGAGAGGGTTGTGGGGGGAGGA
GGAAGGGAAGGGGGAGGAAGTGCAACGAAGTACCCTGAGGATGATATGGC
GGTGTTGCGGTTTGTGAATGGATTTATTTTGAAAGCGGGGATTGCAAGGA
AGTAGGTCCACAGATAATGCCACTAAGCTCTGAATGAAAGGCGGTTGGAT
GGCCGGATAGGGAGAGGGGAAAGGGATCATTTTGGCGGTTGGGATGCGGG
GTGTTTTTGGGATGCGGAGATGGGTGTGAAGGTAAGTGAGAATGTGTGGG
TAGGATTATCAGTAAATAGGTAAAATAGAGTATATATAA

Coding sequence (CDS) from alignment at scaffold_5:803740..805528+

>mRNA_2629 ID=mRNA_2629|Name=jgi.p|Nanoce1779_2|580984|organism=Nannochloropsis oceanica|type=CDS|length=2850bp|location=Sequence derived from alignment at scaffold_5:803740..805528+ (Nannochloropsis oceanica)
ATGGACAGGCCGCGCCAGCGGCGATGCCAATGCCTGTTTGCGGCTTTCCT
GCCCCTTTTCCTCCTCCAGCCTCCTCTAGTCCACGCCTACACTCCCGGAA
CAAAGCCATGGAGCCTCATAGTGGCAAGCAAGGCACCGACAACAGCTAAA
CTCCCGTCCAAAGCCTCCATGAGTAGCAGCAGCGGCAAGCCAAATCCTCT
TTCGACGCTCTTGGAGGTTTACACCCGCGACGATAGCTCACGTGAGAGCG
TACAAATCAGCCCTGAGGAAGCCCGCCTAAAGAAGGACAGGCAGTACACC
TTGCTAACAGGGCTCCCTCTCAAGCCCTACTTCGAACGACGGACGGTTCG
AACACAAGTGGCAGAGAATATTTGGACGTTTGAGCAGCCTCAGGGTTTCT
TCAATGTGACCACCCCCATTCGAATGACTGTGATACGACTGGCCGATGGC
CGGCTGTGGGTGCACGCCCCCGTGGCCGCCACGAGAGAGTGCCGGCGTCT
CCTCGATGAGCTTGGGGGGGAAATTGCGTACATTATTCTCCCCACAACAG
CCTTTGAACACAAGGTCTTTGTCGGCGGCTTTGCAAGGGCGTACCCGAAA
GCGAAAGTGTGGGTATGTCCCGGGCAATGGGCCTGGCCCGTCAACCTGCC
CCCTCCCTTTCGCGTCGATGGCTACCTCTCAGACGACGATGATTCAAGCC
GGAGCAGGAAACCCATGCCTTGGGCAAACGAAATCGAGCAATTCGTCCTT
CAACCCCCTTGCATCGGCATTGGGCCTGCCAACGAGGTCGTCTTCTTCCA
CAAATCCACTAAAACCCTCTTGGTCACAGACCTCGTGGTGTACATCGATG
GCCAGTCCCCCTCCCCCGTCGTGGATATTCCCGACCTTCTCAAAGCTTCG
TACGACGACCCTGATGCGGTGCCAAGCATCACCCCTGTACCGCCCAACAC
AGAAGCTAACCGTCGAAAGGGCTGGGCGAGGATGGCACTCCAAATCCTCT
TCCTCGGCCCCACCCGTTTCTCCACCTTCAAGCTCGTCGAACGCCGCCTG
CTAGTCTCTCCCGTCATTGAGACATTCGTTTACTCCAAAGTGCCCGAGGC
TCTCGTCGAGTTTGTGGAACGCGTGGCTCTAAGGTGGAAGTTCACTTCTA
TTATCCCGGCTCATTTTAATGCGCCCGCTCCCGCTTCCCCCCGGGCGTTG
CAGAGAGCCTTTGCATTTGCCTATGATTTGACAGGAAGGACGCCCGCAAA
GTTGGGGGGGGGCGACAGGGGAGGATATAGTCCGTTGTTGGAGTTTTGGG
AGAGGGTTGTGGGGGGAGGAGGAAGGGAAGGGGGAGGAAGTGCAACGAAG
TACCCTGAGGATGATATGGCGGTGTTGCGGTTTGTGAATGGATTTATTTT
GAAAGCGGGGATTGCAAGGAAGTAGATGGACAGGCCGCGCCAGCGGCGAT
GCCAATGCCTGTTTGCGGCTTTCCTGCCCCTTTTCCTCCTCCAGCCTCCT
CTAGTCCACGCCTACACTCCCGGAACAAAGCCATGGAGCCTCATAGTGGC
AAGCAAGGCACCGACAACAGCTAAACTCCCGTCCAAAGCCTCCATGAGTA
GCAGCAGCGGCAAGCCAAATCCTCTTTCGACGCTCTTGGAGGTTTACACC
CGCGACGATAGCTCACGTGAGAGCGTACAAATCAGCCCTGAGGAAGCCCG
CCTAAAGAAGGACAGGCAGTACACCTTGCTAACAGGGCTCCCTCTCAAGC
CCTACTTCGAACGACGGACGGTTCGAACACAAGTGGCAGAGAATATTTGG
ACGTTTGAGCAGCCTCAGGGTTTCTTCAATGTGACCACCCCCATTCGAAT
GACTGTGATACGACTGGCCGATGGCCGGCTGTGGGTGCACGCCCCCGTGG
CCGCCACGAGAGAGTGCCGGCGTCTCCTCGATGAGCTTGGGGGGGAAATT
GCGTACATTATTCTCCCCACAACAGCCTTTGAACACAAGGTCTTTGTCGG
CGGCTTTGCAAGGGCGTACCCGAAAGCGAAAGTGTGGGTATGTCCCGGGC
AATGGGCCTGGCCCGTCAACCTGCCCCCTCCCTTTCGCGTCGATGGCTAC
CTCTCAGACGACGATGATTCAAGCCGGAGCAGGAAACCCATGCCTTGGGC
AAACGAAATCGAGCAATTCGTCCTTCAACCCCCTTGCATCGGCATTGGGC
CTGCCAACGAGGTCGTCTTCTTCCACAAATCCACTAAAACCCTCTTGGTC
ACAGACCTCGTGGTGTACATCGATGGCCAGTCCCCCTCCCCCGTCGTGGA
TATTCCCGACCTTCTCAAAGCTTCGTACGACGACCCTGATGCGGTGCCAA
GCATCACCCCTGTACCGCCCAACACAGAAGCTAACCGTCGAAAGGGCTGG
GCGAGGATGGCACTCCAAATCCTCTTCCTCGGCCCCACCCGTTTCTCCAC
CTTCAAGCTCGTCGAACGCCGCCTGCTAGTCTCTCCCGTCATTGAGACAT
TCGTTTACTCCAAAGTGCCCGAGGCTCTCGTCGAGTTTGTGGAACGCGTG
GCTCTAAGGTGGAAGTTCACTTCTATTATCCCGGCTCATTTTAATGCGCC
CGCTCCCGCTTCCCCCCGGGCGTTGCAGAGAGCCTTTGCATTTGCCTATG
ATTTGACAGGAAGGACGCCCGCAAAGTTGGGGGGGGGCGACAGGGGAGGA
TATAGTCCGTTGTTGGAGTTTTGGGAGAGGGTTGTGGGGGGAGGAGGAAG
GGAAGGGGGAGGAAGTGCAACGAAGTACCCTGAGGATGATATGGCGGTGT
TGCGGTTTGTGAATGGATTTATTTTGAAAGCGGGGATTGCAAGGAAGTAG

Synonyms

Publications