jgi.p|Nanoce1779_2|580982, mRNA_2628 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580982
Unique NamemRNA_2628
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length796
Alignment locationscaffold_5:802535..803515 -

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Properties
Property NameValue
TranscriptId581068
TrackFilteredModels2
ProteinId580982
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:802535..803515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580982gene_2628Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580982mRNA_2628-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2628CDS_2628Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2628 ID=mRNA_2628|Name=jgi.p|Nanoce1779_2|580982|organism=Nannochloropsis oceanica|type=mRNA|length=796bp
ACAGAGCTCCTCTCATCATGTTTCGACGAGTAGGAGCCGGCCTCAGTCGG
TGGGTGTGCGGCGCGCCCGCGTCGTTGCCTGCGGTCGCTGCCCCTCGCTC
CTCCATCATCATCCCATACAGCAGCAGCAGCTGCAGTCGGAGCCTCAGTG
TCCTGGCCTCGTCCAACCGAAAGGCCTGCCCCTTCCTTCTCTCCCAACAT
AAGCGCATGCCACAGCAGCAGCATGAACTTCTACCACTACCACGAGGACT
GTCGACGAGCAGAGACAGCAGCGCGGCGCAACACGAGACAGACGCAGCAG
AGGGAGCAGCGCCAGAAGGGGACTTGTTGGAGGCGCCCAAGCCGCCGCGC
AATTCCATGGTGGGTGTTGTAGTATCGGACAAGATGGACAAGTCCATTGT
GGTCAAGGTCTCACGTTTGAAGCTTTTTTTGCCTTACATGGTGCGGAAGC
GGACGTTTAAGAAGATTATGGCCCACGACGAGGCCAACGAGTGTGGGGTT
GGGGATATCGTTCGTGTCAAGCCATCGCGGCCGTTGAGCAAGCGGAAGAG
CTTTGCCTTGCATGAGATTATTCGCAAGGACCCCAAGCTGACGATATGAG
GAGCGAATTGGATGGTAGAGATTTGAAGAGGAATCGGGATAGCGGGGGAC
TAATAACTTGGAGGAATGGTCTCCTTCCGTGTTCCACTGTTGATTGCACG
ACCAAGCAGTGAAAAGAAACGTTGTTAAATGTCCTCAGTCCTTTCTGTGG
ATGATTAATACTATTATTACATTAAATTTTGATTTGGCTTTCCCCT
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protein sequence of jgi.p|Nanoce1779_2|580982

>mRNA_2628-protein ID=mRNA_2628-protein|Name=jgi.p|Nanoce1779_2|580982|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MFRRVGAGLSRWVCGAPASLPAVAAPRSSIIIPYSSSSCSRSLSVLASSN
RKACPFLLSQHKRMPQQQHELLPLPRGLSTSRDSSAAQHETDAAEGAAPE
GDLLEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKI
MAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKLTI*
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mRNA from alignment at scaffold_5:802535..803515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2628 ID=mRNA_2628|Name=jgi.p|Nanoce1779_2|580982|organism=Nannochloropsis oceanica|type=mRNA|length=981bp|location=Sequence derived from alignment at scaffold_5:802535..803515- (Nannochloropsis oceanica)
ACAGAGCTCCTCTCATCATGTTTCGACGAGTAGGAGCCGGCCTCAGTCGG
TGGGTGTGCGGCGCGCCCGCGTCGTTGCCTGCGGTCGCTGCCCCTCGCTC
CTCCATCATCATCCCATACAGCAGCAGCAGCTGCAGTCGGAGCCTCAGTG
TCCTGGCCTCGTCCAACCGAAAGGCCTGCCCCTTCCTTCTCTCCCAACAT
AAGCGCATGCCACAGCAGCAGCATGAACTTCTACCACTACCACGAGGACT
GTCGACGAGCAGAGACAGCAGCGCGGCGCAACACGAGACAGACGCAGCAG
AGGGAGCAGCGCCAGAAGGGGACTTGTTGGAGGCGCCCAAGCCGCCGCGC
AATTCCATGGTGGGTGTTGTAGTATCGGACAAGATGGACAAGTCCATTGT
GGTCAAGGTGAGCTTTTGAGTGCTTGGGTGGCTTGGGTGGGCGGCATGGA
TTAGGCAAAAAGGGAGGGGGATATGCCTGAGGATGCTTTTCTATTGTGTG
CAATGTCTTAAAACACACACACACTCTGTAGGAACAGTTTCGATTCCTAC
CTTATCCCCCACACATCCATAAACATATTTAACACCTGATAGGTCTCACG
TTTGAAGCTTTTTTTGCCTTACATGGTGCGGAAGCGGACGTTTAAGAAGA
TTATGGCCCACGACGAGGCCAACGAGTGTGGGGTTGGGGATATCGTTCGT
GTCAAGCCATCGCGGCCGTTGAGCAAGCGGAAGAGCTTTGCCTTGCATGA
GATTATTCGCAAGGACCCCAAGCTGACGATATGAGGAGCGAATTGGATGG
TAGAGATTTGAAGAGGAATCGGGATAGCGGGGGACTAATAACTTGGAGGA
ATGGTCTCCTTCCGTGTTCCACTGTTGATTGCACGACCAAGCAGTGAAAA
GAAACGTTGTTAAATGTCCTCAGTCCTTTCTGTGGATGATTAATACTATT
ATTACATTAAATTTTGATTTGGCTTTCCCCT
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Coding sequence (CDS) from alignment at scaffold_5:802535..803515-

>mRNA_2628 ID=mRNA_2628|Name=jgi.p|Nanoce1779_2|580982|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_5:802535..803515- (Nannochloropsis oceanica)
GTCTCACGTTTGAAGCTTTTTTTGCCTTACATGGTGCGGAAGCGGACGTT
TAAGAAGATTATGGCCCACGACGAGGCCAACGAGTGTGGGGTTGGGGATA
TCGTTCGTGTCAAGCCATCGCGGCCGTTGAGCAAGCGGAAGAGCTTTGCC
TTGCATGAGATTATTCGCAAGGACCCCAAGCTGACGATATGAATGTTTCG
ACGAGTAGGAGCCGGCCTCAGTCGGTGGGTGTGCGGCGCGCCCGCGTCGT
TGCCTGCGGTCGCTGCCCCTCGCTCCTCCATCATCATCCCATACAGCAGC
AGCAGCTGCAGTCGGAGCCTCAGTGTCCTGGCCTCGTCCAACCGAAAGGC
CTGCCCCTTCCTTCTCTCCCAACATAAGCGCATGCCACAGCAGCAGCATG
AACTTCTACCACTACCACGAGGACTGTCGACGAGCAGAGACAGCAGCGCG
GCGCAACACGAGACAGACGCAGCAGAGGGAGCAGCGCCAGAAGGGGACTT
GTTGGAGGCGCCCAAGCCGCCGCGCAATTCCATGGTGGGTGTTGTAGTAT
CGGACAAGATGGACAAGTCCATTGTGGTCAAGGTCTCACGTTTGAAGCTT
TTTTTGCCTTACATGGTGCGGAAGCGGACGTTTAAGAAGATTATGGCCCA
CGACGAGGCCAACGAGTGTGGGGTTGGGGATATCGTTCGTGTCAAGCCAT
CGCGGCCGTTGAGCAAGCGGAAGAGCTTTGCCTTGCATGAGATTATTCGC
AAGGACCCCAAGCTGACGATATGAATGTTTCGACGAGTAGGAGCCGGCCT
CAGTCGGTGGGTGTGCGGCGCGCCCGCGTCGTTGCCTGCGGTCGCTGCCC
CTCGCTCCTCCATCATCATCCCATACAGCAGCAGCAGCTGCAGTCGGAGC
CTCAGTGTCCTGGCCTCGTCCAACCGAAAGGCCTGCCCCTTCCTTCTCTC
CCAACATAAGCGCATGCCACAGCAGCAGCATGAACTTCTACCACTACCAC
GAGGACTGTCGACGAGCAGAGACAGCAGCGCGGCGCAACACGAGACAGAC
GCAGCAGAGGGAGCAGCGCCAGAAGGGGACTTGTTGGAGGCGCCCAAGCC
GCCGCGCAATTCCATGGTGGGTGTTGTAGTATCGGACAAGATGGACAAGT
CCATTGTGGTCAAG
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Synonyms
Publications