jgi.p|Nanoce1779_2|525389, mRNA_2627 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525389
Unique NamemRNA_2627
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1170
Alignment locationscaffold_5:800730..801899 -

Link to JBrowse

Properties
Property NameValue
TranscriptId525475
TrackFilteredModels2
ProteinId525389
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:800730..801899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525389gene_2627Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2627CDS_2627Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525389mRNA_2627-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2627 ID=mRNA_2627|Name=jgi.p|Nanoce1779_2|525389|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp
ATGAGAATACGACCGACCGTCCACTTCGTGCCCATCCTCCTTCACCTTGC
CTGCTTTAGCACGACGGCGCACCGCCAGCTTGTTCATACTGGTGTGGGCT
CTGCCGCCTCCGCCCGCGGTCTGGGCTGCTTCCTTGCACCTCGCCTTCTG
CAATGTTTGCCACTGCTTTCCTCTAACTCGAGAATATGCCACAGCAGTAC
CCGCAGTGGCGCGGGCAACAGCATCAGCCCTAGCGATGAAGGGATACCCG
GGCGAGTTCCCAACAAAATAATTCCCGGTACTATCTACTTTGTCGCCACT
CCTGTGGGCAATCTTGGCGACATCACCCTCCGGGCCCTCGACGTGCTGCG
CGGCGTCGATGTGATCGCCTCAGAAGACACGCGAACAACGGGCTTGCTTC
TCAAGGCTCTTGGATTGACCAAAAAGCCACAAATGAGCCATCATCAACAC
AACGTGCAAAGTCGAGTGCCCGAACTGGTGCGGAAGGCCCAAGTCGAAAA
CCTATCCATTGCCGTGGTCTCAGACGCAGGCACACCTGGTATCTCCGACC
CTGGCAACGAGCTTGCCGCTGCATGTTGGGCCGCAGGGGTCCCTGTCGTG
CCTGTTCCAGGCGCATGCGCGGCAGTTGCCGCTGTGAGCGTCTCTGGATT
TGCATCGACGGAGTTCGTGTTTATTGGCTTCCTCCCTGCGAAGAGTGGAA
AGTCCCGCAAGGCCAAAGTAGCCGAGGTGGCGACCCAAGACCGACCGTGT
GTGCTGTATGAGTCGCCTAACCGCGTGTTGCGCACGTTGATGGAAATTCG
GGAGGCGGATGAGACGGGCGGCGAACGGATGGTGATGTGTGCGCGGGAGC
TGACAAAGTTGCACGAAGAATTGTTTCGAGGTACCTTGAGTGAGGCTGTG
CTTCACTTTGGCGGTCAAGAGGGCAGCGATTCACCCTCAACAGCATCACC
GAGAGGAGAATTTACGTTGGTCTTGGGGCCATCGCCTCGGATGGCGCGGG
GGAAGGAGGAAATGGGTGCCTTGGTGCGAGAAATGCTGCAGGTGTGTCTG
GACGAGGAAGAATTGTCTGCTTCCGAGGCGGCCAAAAAGGTCAGTAAGTG
TCTTGGAAAAGAGGCAGGGCTTGCCAGGTCGGATGTGTACAAAATAGCTC
TTGAAATAAAAGGTAAATAA
back to top

protein sequence of jgi.p|Nanoce1779_2|525389

>mRNA_2627-protein ID=mRNA_2627-protein|Name=jgi.p|Nanoce1779_2|525389|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MRIRPTVHFVPILLHLACFSTTAHRQLVHTGVGSAASARGLGCFLAPRLL
QCLPLLSSNSRICHSSTRSGAGNSISPSDEGIPGRVPNKIIPGTIYFVAT
PVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQH
NVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVV
PVPGACAAVAAVSVSGFASTEFVFIGFLPAKSGKSRKAKVAEVATQDRPC
VLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAV
LHFGGQEGSDSPSTASPRGEFTLVLGPSPRMARGKEEMGALVREMLQVCL
DEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEIKGK*
back to top

mRNA from alignment at scaffold_5:800730..801899-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2627 ID=mRNA_2627|Name=jgi.p|Nanoce1779_2|525389|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp|location=Sequence derived from alignment at scaffold_5:800730..801899- (Nannochloropsis oceanica)
ATGAGAATACGACCGACCGTCCACTTCGTGCCCATCCTCCTTCACCTTGC
CTGCTTTAGCACGACGGCGCACCGCCAGCTTGTTCATACTGGTGTGGGCT
CTGCCGCCTCCGCCCGCGGTCTGGGCTGCTTCCTTGCACCTCGCCTTCTG
CAATGTTTGCCACTGCTTTCCTCTAACTCGAGAATATGCCACAGCAGTAC
CCGCAGTGGCGCGGGCAACAGCATCAGCCCTAGCGATGAAGGGATACCCG
GGCGAGTTCCCAACAAAATAATTCCCGGTACTATCTACTTTGTCGCCACT
CCTGTGGGCAATCTTGGCGACATCACCCTCCGGGCCCTCGACGTGCTGCG
CGGCGTCGATGTGATCGCCTCAGAAGACACGCGAACAACGGGCTTGCTTC
TCAAGGCTCTTGGATTGACCAAAAAGCCACAAATGAGCCATCATCAACAC
AACGTGCAAAGTCGAGTGCCCGAACTGGTGCGGAAGGCCCAAGTCGAAAA
CCTATCCATTGCCGTGGTCTCAGACGCAGGCACACCTGGTATCTCCGACC
CTGGCAACGAGCTTGCCGCTGCATGTTGGGCCGCAGGGGTCCCTGTCGTG
CCTGTTCCAGGCGCATGCGCGGCAGTTGCCGCTGTGAGCGTCTCTGGATT
TGCATCGACGGAGTTCGTGTTTATTGGCTTCCTCCCTGCGAAGAGTGGAA
AGTCCCGCAAGGCCAAAGTAGCCGAGGTGGCGACCCAAGACCGACCGTGT
GTGCTGTATGAGTCGCCTAACCGCGTGTTGCGCACGTTGATGGAAATTCG
GGAGGCGGATGAGACGGGCGGCGAACGGATGGTGATGTGTGCGCGGGAGC
TGACAAAGTTGCACGAAGAATTGTTTCGAGGTACCTTGAGTGAGGCTGTG
CTTCACTTTGGCGGTCAAGAGGGCAGCGATTCACCCTCAACAGCATCACC
GAGAGGAGAATTTACGTTGGTCTTGGGGCCATCGCCTCGGATGGCGCGGG
GGAAGGAGGAAATGGGTGCCTTGGTGCGAGAAATGCTGCAGGTGTGTCTG
GACGAGGAAGAATTGTCTGCTTCCGAGGCGGCCAAAAAGGTCAGTAAGTG
TCTTGGAAAAGAGGCAGGGCTTGCCAGGTCGGATGTGTACAAAATAGCTC
TTGAAATAAAAGGTAAATAA
back to top

Coding sequence (CDS) from alignment at scaffold_5:800730..801899-

>mRNA_2627 ID=mRNA_2627|Name=jgi.p|Nanoce1779_2|525389|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_5:800730..801899- (Nannochloropsis oceanica)
ATGAGAATACGACCGACCGTCCACTTCGTGCCCATCCTCCTTCACCTTGC
CTGCTTTAGCACGACGGCGCACCGCCAGCTTGTTCATACTGGTGTGGGCT
CTGCCGCCTCCGCCCGCGGTCTGGGCTGCTTCCTTGCACCTCGCCTTCTG
CAATGTTTGCCACTGCTTTCCTCTAACTCGAGAATATGCCACAGCAGTAC
CCGCAGTGGCGCGGGCAACAGCATCAGCCCTAGCGATGAAGGGATACCCG
GGCGAGTTCCCAACAAAATAATTCCCGGTACTATCTACTTTGTCGCCACT
CCTGTGGGCAATCTTGGCGACATCACCCTCCGGGCCCTCGACGTGCTGCG
CGGCGTCGATGTGATCGCCTCAGAAGACACGCGAACAACGGGCTTGCTTC
TCAAGGCTCTTGGATTGACCAAAAAGCCACAAATGAGCCATCATCAACAC
AACGTGCAAAGTCGAGTGCCCGAACTGGTGCGGAAGGCCCAAGTCGAAAA
CCTATCCATTGCCGTGGTCTCAGACGCAGGCACACCTGGTATCTCCGACC
CTGGCAACGAGCTTGCCGCTGCATGTTGGGCCGCAGGGGTCCCTGTCGTG
CCTGTTCCAGGCGCATGCGCGGCAGTTGCCGCTGTGAGCGTCTCTGGATT
TGCATCGACGGAGTTCGTGTTTATTGGCTTCCTCCCTGCGAAGAGTGGAA
AGTCCCGCAAGGCCAAAGTAGCCGAGGTGGCGACCCAAGACCGACCGTGT
GTGCTGTATGAGTCGCCTAACCGCGTGTTGCGCACGTTGATGGAAATTCG
GGAGGCGGATGAGACGGGCGGCGAACGGATGGTGATGTGTGCGCGGGAGC
TGACAAAGTTGCACGAAGAATTGTTTCGAGGTACCTTGAGTGAGGCTGTG
CTTCACTTTGGCGGTCAAGAGGGCAGCGATTCACCCTCAACAGCATCACC
GAGAGGAGAATTTACGTTGGTCTTGGGGCCATCGCCTCGGATGGCGCGGG
GGAAGGAGGAAATGGGTGCCTTGGTGCGAGAAATGCTGCAGGTGTGTCTG
GACGAGGAAGAATTGTCTGCTTCCGAGGCGGCCAAAAAGGTCAGTAAGTG
TCTTGGAAAAGAGGCAGGGCTTGCCAGGTCGGATGTGTACAAAATAGCTC
TTGAAATAAAAGGTAAATAA
back to top
Synonyms
Publications