jgi.p|Nanoce1779_2|580976, mRNA_2626 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580976
Unique Name	mRNA_2626
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1818
Alignment location	scaffold_5:797481..799634 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581062
Track	FilteredModels2
ProteinId	580976

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:797481..799634 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580976	gene_2626	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580976	mRNA_2626-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2626	CDS_2626	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:797481..799634-
coding sequence from alignment at scaffold_5:797481..799634-

mRNA sequence

>mRNA_2626 ID=mRNA_2626|Name=jgi.p|Nanoce1779_2|580976|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp
AGCACAGGATTCATCCCGATGCTGTCCTTGTCGGAGCCAAGAAGGTGAGA
GGCCGTGGGTTCGGTAAGACAAGACGAAGACAGAAAGCCTTATCGACTTG
ACGACATGGCCCAGCCACGATCAAGACATCAATTTCCCCAGCACTACCAT
TCCACCATATTGCAACAACTCGTCGTCGTCCTTCTGCTGCTTCTGTTCCC
AAGCATAGCGACTTCTTTTTTCCTGCTGCCTACTGTCCTCCACTGCTCGC
TAATCCATCCCCTCATCCCTCTCGCAGCCGCTCCTAGCAGTACGCAACAG
CAGCAAACCCCAGCCCAACGCGTTCAGCATGCCCTTATGCCTGAGGATAT
TCTATCAAGCGCTATCGCAGGACTCCCTGATCTCAAAGCTGCGCATTTAT
CAACTGCAGTGCTCCGTCTAGGCAAGGGACTATTGCAACCCAAGGAAGCT
ACCCGCCGCCGACAGTTGACACAGGATAACAAAGCCTTCTACACTCTCCT
TGACAAAACACTCACGCTCGTAAGCATTCCCACCGCGAATCTCGGTCATA
TCCAGGACTTTTTACTTGGGCTGGCCTTGCTAGAGCACCCCATATATGAC
GACCCCACTCTCCAAGCACGCATCGAAATGGACCTCTACCGTAATCTTTT
GGCTCGACGAGTCGACGAACTCTCACCCGGTGACATTACCGGGCTCGCCT
GGTGCTGGGAGAAGCTCGGTTTTGAACCCAGACGCCTTCCTTCTGCCTTG
GCAGAGGTGACGTCCACCTTGCCATTTCGTATTCTGATAGGTGCGTTAAA
GACAACAACTGGAGAGGAGGACGAAAACAAGGACAAGGAGGAAGCGTCCC
TCTTAGATCTAGAGGAGTTGCGTGCCGAGGTGAATCTGAAGCGGGACACA
ATCCAGTTGTCTCCTGATAAAACAATTGAAGAATCTCGTTTGACGGCATG
GCAAGGCACGCAGCCATTTTATTACAGTGGGAAGCAAATGCCTGCGCGAC
CGATGACCCCGAGAATTTCTCGGATACGGGATAGGCTGGAGATTTTGACG
GGGGTGCGGTATGACTGTGTATTGATAAATATGTACGAAACGGGCAAGAC
GGGCATGAGGTATCATGTAGATCCGGATCAAGGTGTCTATTGGTCGACCA
ATACGGTGGTAGTAAGCATTGGCGACACCAGGGAATTCTGCCTTCGAGAG
ATCGAGGAGAAGGCGGAGGAAGCCACCTTCAGCAAACGCCGGGGCGGAAG
CAGCATGAGCAACACGAGCAATAGTTTCAGTACCAGCGATGGTGACGGTA
AAAGCGAGACAATAAATGTAACAAAAAAGAAGAAGGGAAAACAAAACTCA
CACCACCGATTTTTCGTCGCACAGAACGACGTCACTGAAATGACGGGGGA
GTGTCAATGGCGGTACCAGCACGCCGTGAGAGTGTGCGATAATGCTGATG
ACGCTGGCCCTAGAATGAGCCTTGTATATAAACAGAGCTTGGGACAGGCG
ACGGAGGAGGAACGAAAGTGGGTCGCTTCCTATTTGCGACAAAAGGGTGG
AGGGAAGAGCGGTGGCTGAGGAGCTATCGCGAGGAGGGAGCATGAATGGC
GGTACCAGCATGTCGTGAGAGTGTTGTTGTTGTTGTCACACGCATTATGC
TGGACAGATAATGAGTTTGATTTGTCGGTCAGGCCCGAGATTCAATGGAG
GAGGGAGGGGGGCGGGTTGCTGGGTTTGGATGCAAGCGAGATTAGAGGGA
GAGGAGGGGAGTGGGGGAAGAGTCTGTCAGTGGGAGTTGATAGAAAATGG
GAAAATCTGCGATTGGAC

protein sequence of jgi.p|Nanoce1779_2|580976

>mRNA_2626-protein ID=mRNA_2626-protein|Name=jgi.p|Nanoce1779_2|580976|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MAQPRSRHQFPQHYHSTILQQLVVVLLLLLFPSIATSFFLLPTVLHCSLI
HPLIPLAAAPSSTQQQQTPAQRVQHALMPEDILSSAIAGLPDLKAAHLST
AVLRLGKGLLQPKEATRRRQLTQDNKAFYTLLDKTLTLVSIPTANLGHIQ
DFLLGLALLEHPIYDDPTLQARIEMDLYRNLLARRVDELSPGDITGLAWC
WEKLGFEPRRLPSALAEVTSTLPFRILIGALKTTTGEEDENKDKEEASLL
DLEELRAEVNLKRDTIQLSPDKTIEESRLTAWQGTQPFYYSGKQMPARPM
TPRISRIRDRLEILTGVRYDCVLINMYETGKTGMRYHVDPDQGVYWSTNT
VVVSIGDTREFCLREIEEKAEEATFSKRRGGSSMSNTSNSFSTSDGDGKS
ETINVTKKKKGKQNSHHRFFVAQNDVTEMTGECQWRYQHAVRVCDNADDA
GPRMSLVYKQSLGQATEEERKWVASYLRQKGGGKSGG*

mRNA from alignment at scaffold_5:797481..799634-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2626 ID=mRNA_2626|Name=jgi.p|Nanoce1779_2|580976|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp|location=Sequence derived from alignment at scaffold_5:797481..799634- (Nannochloropsis oceanica)
AGCACAGGATTCATCCCGATGCTGTCCTTGTCGGAGCCAAGAAGGTGAGA
GGCCGTGGGTTCGGTAAGACAAGACGAAGACAGAAAGCCTTATCGACTTG
ACGACATGGCCCAGCCACGATCAAGACATCAATTTCCCCAGCACTACCAT
TCCACCATATTGCAACAACTCGTCGTCGTCCTTCTGCTGCTTCTGTTCCC
AAGCATAGCGACTTCTTTTTTCCTGCTGCCTACTGTCCTCCACTGCTCGC
TAATCCATCCCCTCATCCCTCTCGCAGCCGCTCCTAGCAGTACGCAACAG
CAGCAAACCCCAGCCCAACGCGTTCAGCATGCCCTTATGCCTGAGGATAT
TCTATCAAGCGCTATCGCAGGACTCCCTGATCTCAAAGCTGCGCATTTAT
CAACTGCAGTGCTCCGTCTAGGCAAGGGACTATTGCAACCCAAGGAAGCT
ACCCGCCGCCGACAGTTGACACAGGATAACAAAGCCTTCTACACTCTCCT
TGACAAAACACTCACGCTCGTAAGCATTCCCACCGCGAATCTCGGTCATA
TCCAGGACTTTTTACTTGGGCTGGCCTTGCTAGAGCACCCCATATATGAC
GACCCCACTCTCCAAGCACGCATCGAAATGGACCTCTACCGTAATCTTTT
GGCTCGACGAGTCGACGAACTCTCACCCGGTGACATTACCGGGCTCGCCT
GGTGCTGGGAGAAGCTCGGTTTTGAACCCAGACGCCTTCCTTCTGCCTTG
GCAGAGGTGACGTCCACCTTGCCATTTCGTATTCTGATAGGTGCGTTAAA
GACAACAACTGGAGAGGAGGACGAAAACAAGGACAAGGAGGAAGCGTCCC
TCTTAGATCTAGAGGAGTTGCGTGCCGAGGTGAATCTGAAGCGGGACACA
ATCCAGTTGTCTCCTGATAAAACAATTGAAGAATCTCGTTTGACGGCATG
GCAAGGCACGCAGCCATTTTATTACAGTGGGAAGCAAATGCCTGCGCGAC
CGATGACCCCGAGAATTTCTCGGATACGGGATAGGCTGGAGATTTTGACG
GGGGTGCGGTATGACTGTGTATTGATAAATATGTACGAAACGGGCAAGAC
GGGCATGAGGTATCATGTAGATCCGGATCAAGGTATGTGCTGGTGGTGAT
GGAGGGTCGCGGGGAGAGAGGTGGTGTCTGTGTGTTGCTTCCTCTTTTTG
GTTTGTAGGGGGTATGGCATGGAAGTGTGCGAGACGAATATGACTTGCTT
GCACTTCCATACAGATCTGGGCGAAGAGAAATGTCCGCGCCGGTGGTGAT
AAGATAATACGGAGGAGGAGGGAGTTTGCTGGGTTTGTGATGGATGCTCA
AACGCCGACGACCGGTCGTTTCCTTCTCCTTTGCTGCCCCGTTATGGCCC
TGAAAGATTCATTTTTGTCCCTCTCTGCTTCCTATCCATGCCGTGTCCCC
CCTAATTCTGACCTACAGGTGTCTATTGGTCGACCAATACGGTGGTAGTA
AGCATTGGCGACACCAGGGAATTCTGCCTTCGAGAGATCGAGGAGAAGGC
GGAGGAAGCCACCTTCAGCAAACGCCGGGGCGGAAGCAGCATGAGCAACA
CGAGCAATAGTTTCAGTACCAGCGATGGTGACGGTAAAAGCGAGACAATA
AATGTAACAAAAAAGAAGAAGGGAAAACAAAACTCACACCACCGATTTTT
CGTCGCACAGAACGACGTCACTGAAATGACGGGGGAGTGTCAATGGCGGT
ACCAGCACGCCGTGAGAGTGTGCGATAATGCTGATGACGCTGGCCCTAGA
ATGAGCCTTGTATATAAACAGAGCTTGGGACAGGCGACGGAGGAGGAACG
AAAGTGGGTCGCTTCCTATTTGCGACAAAAGGGTGGAGGGAAGAGCGGTG
GCTGAGGAGCTATCGCGAGGAGGGAGCATGAATGGCGGTACCAGCATGTC
GTGAGAGTGTTGTTGTTGTTGTCACACGCATTATGCTGGACAGATAATGA
GTTTGATTTGTCGGTCAGGCCCGAGATTCAATGGAGGAGGGAGGGGGGCG
GGTTGCTGGGTTTGGATGCAAGCGAGATTAGAGGGAGAGGAGGGGAGTGG
GGGAAGAGTCTGTCAGTGGGAGTTGATAGAAAATGGGAAAATCTGCGATT
GGAC

Coding sequence (CDS) from alignment at scaffold_5:797481..799634-

>mRNA_2626 ID=mRNA_2626|Name=jgi.p|Nanoce1779_2|580976|organism=Nannochloropsis oceanica|type=CDS|length=2928bp|location=Sequence derived from alignment at scaffold_5:797481..799634- (Nannochloropsis oceanica)
GTGTCTATTGGTCGACCAATACGGTGGTAGTAAGCATTGGCGACACCAGG
GAATTCTGCCTTCGAGAGATCGAGGAGAAGGCGGAGGAAGCCACCTTCAG
CAAACGCCGGGGCGGAAGCAGCATGAGCAACACGAGCAATAGTTTCAGTA
CCAGCGATGGTGACGGTAAAAGCGAGACAATAAATGTAACAAAAAAGAAG
AAGGGAAAACAAAACTCACACCACCGATTTTTCGTCGCACAGAACGACGT
CACTGAAATGACGGGGGAGTGTCAATGGCGGTACCAGCACGCCGTGAGAG
TGTGCGATAATGCTGATGACGCTGGCCCTAGAATGAGCCTTGTATATAAA
CAGAGCTTGGGACAGGCGACGGAGGAGGAACGAAAGTGGGTCGCTTCCTA
TTTGCGACAAAAGGGTGGAGGGAAGAGCGGTGGCTGAATGGCCCAGCCAC
GATCAAGACATCAATTTCCCCAGCACTACCATTCCACCATATTGCAACAA
CTCGTCGTCGTCCTTCTGCTGCTTCTGTTCCCAAGCATAGCGACTTCTTT
TTTCCTGCTGCCTACTGTCCTCCACTGCTCGCTAATCCATCCCCTCATCC
CTCTCGCAGCCGCTCCTAGCAGTACGCAACAGCAGCAAACCCCAGCCCAA
CGCGTTCAGCATGCCCTTATGCCTGAGGATATTCTATCAAGCGCTATCGC
AGGACTCCCTGATCTCAAAGCTGCGCATTTATCAACTGCAGTGCTCCGTC
TAGGCAAGGGACTATTGCAACCCAAGGAAGCTACCCGCCGCCGACAGTTG
ACACAGGATAACAAAGCCTTCTACACTCTCCTTGACAAAACACTCACGCT
CGTAAGCATTCCCACCGCGAATCTCGGTCATATCCAGGACTTTTTACTTG
GGCTGGCCTTGCTAGAGCACCCCATATATGACGACCCCACTCTCCAAGCA
CGCATCGAAATGGACCTCTACCGTAATCTTTTGGCTCGACGAGTCGACGA
ACTCTCACCCGGTGACATTACCGGGCTCGCCTGGTGCTGGGAGAAGCTCG
GTTTTGAACCCAGACGCCTTCCTTCTGCCTTGGCAGAGGTGACGTCCACC
TTGCCATTTCGTATTCTGATAGGTGCGTTAAAGACAACAACTGGAGAGGA
GGACGAAAACAAGGACAAGGAGGAAGCGTCCCTCTTAGATCTAGAGGAGT
TGCGTGCCGAGGTGAATCTGAAGCGGGACACAATCCAGTTGTCTCCTGAT
AAAACAATTGAAGAATCTCGTTTGACGGCATGGCAAGGCACGCAGCCATT
TTATTACAGTGGGAAGCAAATGCCTGCGCGACCGATGACCCCGAGAATTT
CTCGGATACGGGATAGGCTGGAGATTTTGACGGGGGTGCGGTATGACTGT
GTATTGATAAATATGTACGAAACGGGCAAGACGGGCATGAGGTATCATGT
AGATCCGGATCAAGGTGTCTATTGGTCGACCAATACGGTGGTAGTAAGCA
TTGGCGACACCAGGGAATTCTGCCTTCGAGAGATCGAGGAGAAGGCGGAG
GAAGCCACCTTCAGCAAACGCCGGGGCGGAAGCAGCATGAGCAACACGAG
CAATAGTTTCAGTACCAGCGATGGTGACGGTAAAAGCGAGACAATAAATG
TAACAAAAAAGAAGAAGGGAAAACAAAACTCACACCACCGATTTTTCGTC
GCACAGAACGACGTCACTGAAATGACGGGGGAGTGTCAATGGCGGTACCA
GCACGCCGTGAGAGTGTGCGATAATGCTGATGACGCTGGCCCTAGAATGA
GCCTTGTATATAAACAGAGCTTGGGACAGGCGACGGAGGAGGAACGAAAG
TGGGTCGCTTCCTATTTGCGACAAAAGGGTGGAGGGAAGAGCGGTGGCTG
AATGGCCCAGCCACGATCAAGACATCAATTTCCCCAGCACTACCATTCCA
CCATATTGCAACAACTCGTCGTCGTCCTTCTGCTGCTTCTGTTCCCAAGC
ATAGCGACTTCTTTTTTCCTGCTGCCTACTGTCCTCCACTGCTCGCTAAT
CCATCCCCTCATCCCTCTCGCAGCCGCTCCTAGCAGTACGCAACAGCAGC
AAACCCCAGCCCAACGCGTTCAGCATGCCCTTATGCCTGAGGATATTCTA
TCAAGCGCTATCGCAGGACTCCCTGATCTCAAAGCTGCGCATTTATCAAC
TGCAGTGCTCCGTCTAGGCAAGGGACTATTGCAACCCAAGGAAGCTACCC
GCCGCCGACAGTTGACACAGGATAACAAAGCCTTCTACACTCTCCTTGAC
AAAACACTCACGCTCGTAAGCATTCCCACCGCGAATCTCGGTCATATCCA
GGACTTTTTACTTGGGCTGGCCTTGCTAGAGCACCCCATATATGACGACC
CCACTCTCCAAGCACGCATCGAAATGGACCTCTACCGTAATCTTTTGGCT
CGACGAGTCGACGAACTCTCACCCGGTGACATTACCGGGCTCGCCTGGTG
CTGGGAGAAGCTCGGTTTTGAACCCAGACGCCTTCCTTCTGCCTTGGCAG
AGGTGACGTCCACCTTGCCATTTCGTATTCTGATAGGTGCGTTAAAGACA
ACAACTGGAGAGGAGGACGAAAACAAGGACAAGGAGGAAGCGTCCCTCTT
AGATCTAGAGGAGTTGCGTGCCGAGGTGAATCTGAAGCGGGACACAATCC
AGTTGTCTCCTGATAAAACAATTGAAGAATCTCGTTTGACGGCATGGCAA
GGCACGCAGCCATTTTATTACAGTGGGAAGCAAATGCCTGCGCGACCGAT
GACCCCGAGAATTTCTCGGATACGGGATAGGCTGGAGATTTTGACGGGGG
TGCGGTATGACTGTGTATTGATAAATATGTACGAAACGGGCAAGACGGGC
ATGAGGTATCATGTAGATCCGGATCAAG

Synonyms

Publications