jgi.p|Nanoce1779_2|580974, mRNA_2625 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580974
Unique NamemRNA_2625
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length802
Alignment locationscaffold_5:795290..796276 -

Link to JBrowse

Properties
Property NameValue
TranscriptId581060
TrackFilteredModels2
ProteinId580974
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:795290..796276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580974gene_2625Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580974mRNA_2625-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2625CDS_2625Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2625 ID=mRNA_2625|Name=jgi.p|Nanoce1779_2|580974|organism=Nannochloropsis oceanica|type=mRNA|length=802bp
CCTCCTTTTCCTTCTATTCCTCCCCTGTCCATCATCATGGCTATCAACTC
TTCCTCCATCGAACGACGACCACGACCCATCAACTGCTGCTGCTGCTGCT
GCTGCTGCTTCTGTCCCTTTCTCTTCTTCTTACTCCTTTGTGGCTGCTCC
CCGCCGGAATTTGTCATAGGACTTGCACGTTTCTTCGTCAAGAGGGGAGA
GGGGGGAGAGAGGCCTCCCTCCATCCCTCCTCCTACTCCTCCTGCTCCTC
CGAGGAGATTTACATGCATCTCCTCCTGTCTATCACCTACATACATTCCA
CTCTCATATTCCATTTCGTCGCCGTCCTCCTCCTCCTCAAGACGGAAACG
CCCTCCTCTCCTTCCTCCTTCTCTCTCCCCTCCTCCTCTGCCGTTCTGCT
GCTGCTGTTGCACATATTCCATGGCTTTCTCGTACTCTTTGACCACTACC
GCCAGCGCCACCGGCCGCAGGTTTTCTATCTCCCGTCGCACCCAGGCCTG
CGTCTCTTCCACTCTTTTGTTCATCATTGCAACCTCCTCGGCCAGCTGCT
GTTTATGCTGTTCCTTCAAAGCCTCGACCAGGAGCAAGCGGTCCCGGCGG
GCTTGTTGAGCGGTGACGGTGACGGCCTTGTCGGTGGCCACTTCACGCTC
CCGGCGCTCCAAGGCAGGGTCGAAAAGGAGGCACGTCAGAACACGGTGAT
GATGAAGCTGCTGAGCGGGGGACATGGAGGTGTGACCTTTCCAGGGCTCC
ATCGCTGGGGTAGAGGTGGTCTCGAAAGTCTTCATGCTTGGGCTGCAGTG
CT
back to top

protein sequence of jgi.p|Nanoce1779_2|580974

>mRNA_2625-protein ID=mRNA_2625-protein|Name=jgi.p|Nanoce1779_2|580974|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MAINSSSIERRPRPINCCCCCCCCFCPFLFFLLLCGCSPPEFVIGLARFF
VKRGEGGERPPSIPPPTPPAPPRRFTCISSCLSPTYIPLSYSISSPSSSS
SRRKRPPLLPPSLSPPPLPFCCCCCTYSMAFSYSLTTTASATGRRFSISR
RTQACVSSTLLFIIATSSASCCLCCSFKASTRSKRSRRAC*
back to top

mRNA from alignment at scaffold_5:795290..796276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2625 ID=mRNA_2625|Name=jgi.p|Nanoce1779_2|580974|organism=Nannochloropsis oceanica|type=mRNA|length=987bp|location=Sequence derived from alignment at scaffold_5:795290..796276- (Nannochloropsis oceanica)
CCTCCTTTTCCTTCTATTCCTCCCCTGTCCATCATCATGGCTATCAACTC
TTCCTCCATCGAACGACGACCACGACCCATCAACTGCTGCTGCTGCTGCT
GCTGCTGCTTCTGTCCCTTTCTCTTCTTCTTACTCCTTTGTGGCTGCTCC
CCGCCGGAATTTGTCATAGGACTTGCACGTTTCTTCGTCAAGAGGGGAGA
GGGGGGAGAGAGGCCTCCCTCCATCCCTCCTCCTACTCCTCCTGCTCCTC
CGAGGAGATTTACATGCATCTCCTCCTGTCTATCACCTACATACATTCCA
CTCTCATATTCCATTTCGTCGCCGTCCTCCTCCTCCTCAAGACGGAAACG
CCCTCCTCTCCTTCCTCCTTCTCTCTCCCCTCCTCCTCTGCCGTTCTGCT
GCTGCTGTTGCACATATTCCATGGCTTTCTCGTACTCTTTGACCACTACC
GCCAGCGCCACCGGCCGCAGGTTTTCTATCTCCCGTCGCACCCAGGCCTG
GAGAGGGAGGGGAGAGAGCAAATGTGAGAGAGGATTGCAATGAGGGCAAG
GAAATGTGCTAACATTTTGGGGCTAAATATGGTTGTAAGCACTGGCGGTG
GATCACTAGTGTGGGTGGATGGGATGATCGCAGGTTGAGGGGAAAAGGAG
AGAATAGACAAGGAAGGAGCAACAAAAAGTACCTGCGTCTCTTCCACTCT
TTTGTTCATCATTGCAACCTCCTCGGCCAGCTGCTGTTTATGCTGTTCCT
TCAAAGCCTCGACCAGGAGCAAGCGGTCCCGGCGGGCTTGTTGAGCGGTG
ACGGTGACGGCCTTGTCGGTGGCCACTTCACGCTCCCGGCGCTCCAAGGC
AGGGTCGAAAAGGAGGCACGTCAGAACACGGTGATGATGAAGCTGCTGAG
CGGGGGACATGGAGGTGTGACCTTTCCAGGGCTCCATCGCTGGGGTAGAG
GTGGTCTCGAAAGTCTTCATGCTTGGGCTGCAGTGCT
back to top

Coding sequence (CDS) from alignment at scaffold_5:795290..796276-

>mRNA_2625 ID=mRNA_2625|Name=jgi.p|Nanoce1779_2|580974|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_5:795290..796276- (Nannochloropsis oceanica)
CTGCGTCTCTTCCACTCTTTTGTTCATCATTGCAACCTCCTCGGCCAGCT
GCTGTTTATGCTGTTCCTTCAAAGCCTCGACCAGGAGCAAGCGGTCCCGG
CGGGCTTGTTGAATGGCTATCAACTCTTCCTCCATCGAACGACGACCACG
ACCCATCAACTGCTGCTGCTGCTGCTGCTGCTGCTTCTGTCCCTTTCTCT
TCTTCTTACTCCTTTGTGGCTGCTCCCCGCCGGAATTTGTCATAGGACTT
GCACGTTTCTTCGTCAAGAGGGGAGAGGGGGGAGAGAGGCCTCCCTCCAT
CCCTCCTCCTACTCCTCCTGCTCCTCCGAGGAGATTTACATGCATCTCCT
CCTGTCTATCACCTACATACATTCCACTCTCATATTCCATTTCGTCGCCG
TCCTCCTCCTCCTCAAGACGGAAACGCCCTCCTCTCCTTCCTCCTTCTCT
CTCCCCTCCTCCTCTGCCGTTCTGCTGCTGCTGTTGCACATATTCCATGG
CTTTCTCGTACTCTTTGACCACTACCGCCAGCGCCACCGGCCGCAGGTTT
TCTATCTCCCGTCGCACCCAGGCCTGCGTCTCTTCCACTCTTTTGTTCAT
CATTGCAACCTCCTCGGCCAGCTGCTGTTTATGCTGTTCCTTCAAAGCCT
CGACCAGGAGCAAGCGGTCCCGGCGGGCTTGTTGAATGGCTATCAACTCT
TCCTCCATCGAACGACGACCACGACCCATCAACTGCTGCTGCTGCTGCTG
CTGCTGCTTCTGTCCCTTTCTCTTCTTCTTACTCCTTTGTGGCTGCTCCC
CGCCGGAATTTGTCATAGGACTTGCACGTTTCTTCGTCAAGAGGGGAGAG
GGGGGAGAGAGGCCTCCCTCCATCCCTCCTCCTACTCCTCCTGCTCCTCC
GAGGAGATTTACATGCATCTCCTCCTGTCTATCACCTACATACATTCCAC
TCTCATATTCCATTTCGTCGCCGTCCTCCTCCTCCTCAAGACGGAAACGC
CCTCCTCTCCTTCCTCCTTCTCTCTCCCCTCCTCCTCTGCCGTTCTGCTG
CTGCTGTTGCACATATTCCATGGCTTTCTCGTACTCTTTGACCACTACCG
CCAGCGCCACCGGCCGCAGGTTTTCTATCTCCCGTCGCACCCAGGC
back to top
Synonyms
Publications