jgi.p|Nanoce1779_2|580972, mRNA_2624 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580972
Unique Name	mRNA_2624
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2406
Alignment location	scaffold_5:792260..794665 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581058
Track	FilteredModels2
ProteinId	580972

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:792260..794665 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580972	gene_2624	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580972	mRNA_2624-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2624	CDS_2624	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:792260..794665-
coding sequence from alignment at scaffold_5:792260..794665-

mRNA sequence

>mRNA_2624 ID=mRNA_2624|Name=jgi.p|Nanoce1779_2|580972|organism=Nannochloropsis oceanica|type=mRNA|length=2406bp
GCGCTTCCCTGGGCCAGGTCCACGACCGCCATCACCACAATCACGAGCAT
TACATCAAGAAAGCGCACAGCCGTAGCCATGGACTACACTCGACCACCAC
TTAGAACAGGACGACCTTCACACGCACCCTATTCCTCGTCCTCCTCACCC
TCGTCCACATCCTCGTCCACTTCCTCCTCCCCCGCCTCGACCTCCCACCT
TCGACCCTCCCCAGTCAGCGTTCCCCGGAATCAATTAGCGTGGCACATCC
AATCCTTCAAAGTAGGCACACATGGCCTCTGGCGCAGAGCCACTGGAGGA
ATGAAATCGAAATCCATCCTAAATAACATTGCGGGGCGGAGCGTGGGGGG
AGAAATGACAGCGATTATGGGGGCGTCCGGTGCCGGAAAGACGACGTTGT
TGGAGTGTTTGTCGTTGCGGTCGAGGGATTTCAAGGGTACAGTGACTTGG
AATGGGGAGCCGGCAAAGGGAGGGTACTTTACGGCGTCTGCTTTGGTGTA
TCAACGCGAAGTGTTGTGTGGGTTTTTGACGGTTGAAGAACACTTGGTGT
TTCACGGGATGGCGCGGATGAGTGATCGCTACAGTCAGGAGGAAATTGAC
AGGAGGGTATCTGAGGTAATGGAGGAGATGGGATTGAGTAAGTGTCGTTC
CACGCCCGTGGGGGGCTTGGGAGCACCGCAGGGGAAGAAGGGCCTTTCGG
GAGGGGAGAGGAAAAGATTGACCGTCGCCACCGAGCTACTCTTATGCCCA
CAGGTCCTCTTTCTGGACGAACCGACCACGGGCATGGACTCTGTGATGGC
GGAGAACATTATCGTCCTCCTCCGGCACCTGGCTTTAACGAGAAATATCC
TTGTCCTTGCTACCATCCATGGGCCGTCTTCTCAGATTTTTTCCCATTTC
AGTCACCTTTTACTGTTGACAAATGATGGGCGTCTGGCTTTTCACGGTTC
TGTTTCTGACGCCCTGGTGCATGTAAGTGAGGGGTTGGGAAGGCCCTTGC
CGGATGCGTACAACCCGGCCGACCATTTCGTACGGCTCGTTGTAAGCAAA
CCAGGGGGAGGGATAAGAGCAATGGAGGAAAGGAGGAAGGAGAACGATTG
GTTGGTCGAGGCCTTTGAGGCTTCAAGAAGGAAAGGAAGAAGGGAGGAAG
GGATGGAGGAGGCACAGAATAGTCATTGGGGGTTGAGGGGGATGCAGACA
CAACATGCGAGATGGTGGATGTTATTCAGGCTGAACTTGAGAAGGGGGCT
TCTGCAGACGTCGAGGAACAGCACGAGCTTTTGGTTGTACGGGGCGGTGA
TGGGCATCATTGGCTTGTGTTTCGGGACATTGTATTTCCAGCAGGCACGA
TCGAACTGGCGGAATCTGATGGGCATGCTGTATGCCCTGGTGGTAGCTCT
GCTGTACATGTGCCCGCTGACTGTCATTCTGAGGGCGCCTTTGGACTGGC
CCATATTGTTGAGGGAGCACTTCGCAGGAGCGAACGCTGCCGGGCCGTAC
TTGTGTGCGAAGGTTGTGTACGAGCTGCCTTTCCTGTACGGGCCTTTAGT
GTTGGTCACGCTGTTGTACTGGATGACGGGATTGATTGCGAGCTTGGAAT
CCTTCGTGGCGTTCGCGGGGGTGGTGGCCTTGGTGACGCAGGCCTCGTGC
GCGATGGCTCTGATGGTCGGGTCATTGAGTGCCAACCCGATGTTGACGCT
TGGGATCCTGCCGGCCTTCATCACTCCCATGGTGTTGTTCAGCGGCTTCT
TGTACGACACTGCCACTTTGCCCGGGTATCTTGCGTGGCTTCCCAAGGTG
AGTATTGTGAATTATGGGTTCGCGGCCTTGGTGAGCTTACAGCAGGAGTT
GTTGCCGGTGAAGGTGAGACCGATGGCGTTGAGGTTCACAAATGTGGAGC
CGGCGGAGTTGAAGGAGAATCTGGCGACGCTGGTGGGAATGACGGGCGTT
TTTTATGTGTTGACTTACATGTTTTTGGCCCTGCGCTTACGAACGGCAAC
GAGGGCATGAGGCCGGAAACGGGGAGGATTTACGAAGAATGATGGAGGGA
TTGATGTACAAAGACAGCGAGAGTGCTGGTGAGCTGGTGAGAATGAAGAT
ACATAGAAGAATAAAGAAATAGAAGGAGGACGAGACGACATGAGCTCGAA
AAGAGGAAAAACTTCAGGATTCAAGAGTACTTTGTATATGCTAGTGTGTG
TCATTGTTAGGGACCATTGGTTAAGAGTTGGGAAAAAAGGAGGGAGGGAG
AGAAGAAACGTGACGGAGGGTGCAAGTGCGCGCGACTTTTTTTCAAAAAC
AGAAGAAAAAAATGACTGAGGAAAGAATCAAACAGCAGCAGCTCTGAGCA
GTGGCAGTCTCTTTTTAAAAACAATGGGAAGAAGGAATGATGACAGACGT
TAAAAC

protein sequence of jgi.p|Nanoce1779_2|580972

>mRNA_2624-protein ID=mRNA_2624-protein|Name=jgi.p|Nanoce1779_2|580972|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MDYTRPPLRTGRPSHAPYSSSSSPSSTSSSTSSSPASTSHLRPSPVSVPR
NQLAWHIQSFKVGTHGLWRRATGGMKSKSILNNIAGRSVGGEMTAIMGAS
GAGKTTLLECLSLRSRDFKGTVTWNGEPAKGGYFTASALVYQREVLCGFL
TVEEHLVFHGMARMSDRYSQEEIDRRVSEVMEEMGLSKCRSTPVGGLGAP
QGKKGLSGGERKRLTVATELLLCPQVLFLDEPTTGMDSVMAENIIVLLRH
LALTRNILVLATIHGPSSQIFSHFSHLLLLTNDGRLAFHGSVSDALVHVS
EGLGRPLPDAYNPADHFVRLVVSKPGGGIRAMEERRKENDWLVEAFEASR
RKGRREEGMEEAQNSHWGLRGMQTQHARWWMLFRLNLRRGLLQTSRNSTS
FWLYGAVMGIIGLCFGTLYFQQARSNWRNLMGMLYALVVALLYMCPLTVI
LRAPLDWPILLREHFAGANAAGPYLCAKVVYELPFLYGPLVLVTLLYWMT
GLIASLESFVAFAGVVALVTQASCAMALMVGSLSANPMLTLGILPAFITP
MVLFSGFLYDTATLPGYLAWLPKVSIVNYGFAALVSLQQELLPVKVRPMA
LRFTNVEPAELKENLATLVGMTGVFYVLTYMFLALRLRTATRA*

mRNA from alignment at scaffold_5:792260..794665-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2624 ID=mRNA_2624|Name=jgi.p|Nanoce1779_2|580972|organism=Nannochloropsis oceanica|type=mRNA|length=2406bp|location=Sequence derived from alignment at scaffold_5:792260..794665- (Nannochloropsis oceanica)
GCGCTTCCCTGGGCCAGGTCCACGACCGCCATCACCACAATCACGAGCAT
TACATCAAGAAAGCGCACAGCCGTAGCCATGGACTACACTCGACCACCAC
TTAGAACAGGACGACCTTCACACGCACCCTATTCCTCGTCCTCCTCACCC
TCGTCCACATCCTCGTCCACTTCCTCCTCCCCCGCCTCGACCTCCCACCT
TCGACCCTCCCCAGTCAGCGTTCCCCGGAATCAATTAGCGTGGCACATCC
AATCCTTCAAAGTAGGCACACATGGCCTCTGGCGCAGAGCCACTGGAGGA
ATGAAATCGAAATCCATCCTAAATAACATTGCGGGGCGGAGCGTGGGGGG
AGAAATGACAGCGATTATGGGGGCGTCCGGTGCCGGAAAGACGACGTTGT
TGGAGTGTTTGTCGTTGCGGTCGAGGGATTTCAAGGGTACAGTGACTTGG
AATGGGGAGCCGGCAAAGGGAGGGTACTTTACGGCGTCTGCTTTGGTGTA
TCAACGCGAAGTGTTGTGTGGGTTTTTGACGGTTGAAGAACACTTGGTGT
TTCACGGGATGGCGCGGATGAGTGATCGCTACAGTCAGGAGGAAATTGAC
AGGAGGGTATCTGAGGTAATGGAGGAGATGGGATTGAGTAAGTGTCGTTC
CACGCCCGTGGGGGGCTTGGGAGCACCGCAGGGGAAGAAGGGCCTTTCGG
GAGGGGAGAGGAAAAGATTGACCGTCGCCACCGAGCTACTCTTATGCCCA
CAGGTCCTCTTTCTGGACGAACCGACCACGGGCATGGACTCTGTGATGGC
GGAGAACATTATCGTCCTCCTCCGGCACCTGGCTTTAACGAGAAATATCC
TTGTCCTTGCTACCATCCATGGGCCGTCTTCTCAGATTTTTTCCCATTTC
AGTCACCTTTTACTGTTGACAAATGATGGGCGTCTGGCTTTTCACGGTTC
TGTTTCTGACGCCCTGGTGCATGTAAGTGAGGGGTTGGGAAGGCCCTTGC
CGGATGCGTACAACCCGGCCGACCATTTCGTACGGCTCGTTGTAAGCAAA
CCAGGGGGAGGGATAAGAGCAATGGAGGAAAGGAGGAAGGAGAACGATTG
GTTGGTCGAGGCCTTTGAGGCTTCAAGAAGGAAAGGAAGAAGGGAGGAAG
GGATGGAGGAGGCACAGAATAGTCATTGGGGGTTGAGGGGGATGCAGACA
CAACATGCGAGATGGTGGATGTTATTCAGGCTGAACTTGAGAAGGGGGCT
TCTGCAGACGTCGAGGAACAGCACGAGCTTTTGGTTGTACGGGGCGGTGA
TGGGCATCATTGGCTTGTGTTTCGGGACATTGTATTTCCAGCAGGCACGA
TCGAACTGGCGGAATCTGATGGGCATGCTGTATGCCCTGGTGGTAGCTCT
GCTGTACATGTGCCCGCTGACTGTCATTCTGAGGGCGCCTTTGGACTGGC
CCATATTGTTGAGGGAGCACTTCGCAGGAGCGAACGCTGCCGGGCCGTAC
TTGTGTGCGAAGGTTGTGTACGAGCTGCCTTTCCTGTACGGGCCTTTAGT
GTTGGTCACGCTGTTGTACTGGATGACGGGATTGATTGCGAGCTTGGAAT
CCTTCGTGGCGTTCGCGGGGGTGGTGGCCTTGGTGACGCAGGCCTCGTGC
GCGATGGCTCTGATGGTCGGGTCATTGAGTGCCAACCCGATGTTGACGCT
TGGGATCCTGCCGGCCTTCATCACTCCCATGGTGTTGTTCAGCGGCTTCT
TGTACGACACTGCCACTTTGCCCGGGTATCTTGCGTGGCTTCCCAAGGTG
AGTATTGTGAATTATGGGTTCGCGGCCTTGGTGAGCTTACAGCAGGAGTT
GTTGCCGGTGAAGGTGAGACCGATGGCGTTGAGGTTCACAAATGTGGAGC
CGGCGGAGTTGAAGGAGAATCTGGCGACGCTGGTGGGAATGACGGGCGTT
TTTTATGTGTTGACTTACATGTTTTTGGCCCTGCGCTTACGAACGGCAAC
GAGGGCATGAGGCCGGAAACGGGGAGGATTTACGAAGAATGATGGAGGGA
TTGATGTACAAAGACAGCGAGAGTGCTGGTGAGCTGGTGAGAATGAAGAT
ACATAGAAGAATAAAGAAATAGAAGGAGGACGAGACGACATGAGCTCGAA
AAGAGGAAAAACTTCAGGATTCAAGAGTACTTTGTATATGCTAGTGTGTG
TCATTGTTAGGGACCATTGGTTAAGAGTTGGGAAAAAAGGAGGGAGGGAG
AGAAGAAACGTGACGGAGGGTGCAAGTGCGCGCGACTTTTTTTCAAAAAC
AGAAGAAAAAAATGACTGAGGAAAGAATCAAACAGCAGCAGCTCTGAGCA
GTGGCAGTCTCTTTTTAAAAACAATGGGAAGAAGGAATGATGACAGACGT
TAAAAC

Coding sequence (CDS) from alignment at scaffold_5:792260..794665-

>mRNA_2624 ID=mRNA_2624|Name=jgi.p|Nanoce1779_2|580972|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_5:792260..794665- (Nannochloropsis oceanica)
ATGGACTACACTCGACCACCACTTAGAACAGGACGACCTTCACACGCACC
CTATTCCTCGTCCTCCTCACCCTCGTCCACATCCTCGTCCACTTCCTCCT
CCCCCGCCTCGACCTCCCACCTTCGACCCTCCCCAGTCAGCGTTCCCCGG
AATCAATTAGCGTGGCACATCCAATCCTTCAAAGTAGGCACACATGGCCT
CTGGCGCAGAGCCACTGGAGGAATGAAATCGAAATCCATCCTAAATAACA
TTGCGGGGCGGAGCGTGGGGGGAGAAATGACAGCGATTATGGGGGCGTCC
GGTGCCGGAAAGACGACGTTGTTGGAGTGTTTGTCGTTGCGGTCGAGGGA
TTTCAAGGGTACAGTGACTTGGAATGGGGAGCCGGCAAAGGGAGGGTACT
TTACGGCGTCTGCTTTGGTGTATCAACGCGAAGTGTTGTGTGGGTTTTTG
ACGGTTGAAGAACACTTGGTGTTTCACGGGATGGCGCGGATGAGTGATCG
CTACAGTCAGGAGGAAATTGACAGGAGGGTATCTGAGGTAATGGAGGAGA
TGGGATTGAGTAAGTGTCGTTCCACGCCCGTGGGGGGCTTGGGAGCACCG
CAGGGGAAGAAGGGCCTTTCGGGAGGGGAGAGGAAAAGATTGACCGTCGC
CACCGAGCTACTCTTATGCCCACAGGTCCTCTTTCTGGACGAACCGACCA
CGGGCATGGACTCTGTGATGGCGGAGAACATTATCGTCCTCCTCCGGCAC
CTGGCTTTAACGAGAAATATCCTTGTCCTTGCTACCATCCATGGGCCGTC
TTCTCAGATTTTTTCCCATTTCAGTCACCTTTTACTGTTGACAAATGATG
GGCGTCTGGCTTTTCACGGTTCTGTTTCTGACGCCCTGGTGCATGTAAGT
GAGGGGTTGGGAAGGCCCTTGCCGGATGCGTACAACCCGGCCGACCATTT
CGTACGGCTCGTTGTAAGCAAACCAGGGGGAGGGATAAGAGCAATGGAGG
AAAGGAGGAAGGAGAACGATTGGTTGGTCGAGGCCTTTGAGGCTTCAAGA
AGGAAAGGAAGAAGGGAGGAAGGGATGGAGGAGGCACAGAATAGTCATTG
GGGGTTGAGGGGGATGCAGACACAACATGCGAGATGGTGGATGTTATTCA
GGCTGAACTTGAGAAGGGGGCTTCTGCAGACGTCGAGGAACAGCACGAGC
TTTTGGTTGTACGGGGCGGTGATGGGCATCATTGGCTTGTGTTTCGGGAC
ATTGTATTTCCAGCAGGCACGATCGAACTGGCGGAATCTGATGGGCATGC
TGTATGCCCTGGTGGTAGCTCTGCTGTACATGTGCCCGCTGACTGTCATT
CTGAGGGCGCCTTTGGACTGGCCCATATTGTTGAGGGAGCACTTCGCAGG
AGCGAACGCTGCCGGGCCGTACTTGTGTGCGAAGGTTGTGTACGAGCTGC
CTTTCCTGTACGGGCCTTTAGTGTTGGTCACGCTGTTGTACTGGATGACG
GGATTGATTGCGAGCTTGGAATCCTTCGTGGCGTTCGCGGGGGTGGTGGC
CTTGGTGACGCAGGCCTCGTGCGCGATGGCTCTGATGGTCGGGTCATTGA
GTGCCAACCCGATGTTGACGCTTGGGATCCTGCCGGCCTTCATCACTCCC
ATGGTGTTGTTCAGCGGCTTCTTGTACGACACTGCCACTTTGCCCGGGTA
TCTTGCGTGGCTTCCCAAGGTGAGTATTGTGAATTATGGGTTCGCGGCCT
TGGTGAGCTTACAGCAGGAGTTGTTGCCGGTGAAGGTGAGACCGATGGCG
TTGAGGTTCACAAATGTGGAGCCGGCGGAGTTGAAGGAGAATCTGGCGAC
GCTGGTGGGAATGACGGGCGTTTTTTATGTGTTGACTTACATGTTTTTGG
CCCTGCGCTTACGAACGGCAACGAGGGCATGA

Synonyms

Publications