jgi.p|Nanoce1779_2|334274, mRNA_2623 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|334274
Unique NamemRNA_2623
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length757
Alignment locationscaffold_5:791711..792467 -

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Properties
Property NameValue
TranscriptId334360
TrackFilteredModels2
ProteinId334274
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:791711..792467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|334274gene_2623Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|334274mRNA_2623-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2623CDS_2623Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2623 ID=mRNA_2623|Name=jgi.p|Nanoce1779_2|334274|organism=Nannochloropsis oceanica|type=mRNA|length=757bp
TGTCATTGTTAGGGACCATTGGTTAAGAGTTGGGAAAAAAGGAGGGAGGG
AGAGAAGAAACGTGACGGAGGGTGCAAGTGCGCGCGACTTTTTTTCAAAA
ACAGAAGAAAAAAATGACTGAGGAAAGAATCAAACAGCAGCAGCTCTGAG
CAGTGGCAGTCTCTTTTTAAAAACAATGGGAAGAAGGAATGATGACAGAC
GTTAAAACTCGCCCGCCTTTCCCCGGTATACGCGACCTCTCGTCTCTTAT
TTATCTTTCGTTCCCTTTCCTTCTGTCGATCCATCTCTCAAGGGCGTGCA
CGTTTTCTTCACTTGCTTGCCTTTCACTTCCTCCCACACTCGCTCGTATT
CTTTCTGCCTCTCTCTCCTTCTCTCTTTTCGGTTTTATCCATCCCACTTC
TTTTCTCGAAACTATATATAAATCTCGGGGTAAAATTTTAACCGTCTCTC
CAGGAGTGTGGGATCATTCATCCTCCTCTTCTCCTCCTCTTGCAGCTGCC
GATGCTGCTGTTTACGCGGATGCGCTTGCTCATCTTGCCTCGGCGCCTGT
CTCTGTTTCCACGCTCTTTCGCGCTCTCCTTTTCGTGTCCTACCTTCTAC
ACTATTGTGGGGGTTCTCTTCTCTTCTTAACTTTTTTAAATGCTCTCGAT
TGCGTTTCTTGGATTTGGCGGTTTCCTCGTCAAAATGTTAATATCTAGCA
CACTGTCCTTTCCGTGGTCGCATAAGATGAAATAGTTTAACAAGATTACT
ACTAGTA
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protein sequence of jgi.p|Nanoce1779_2|334274

>mRNA_2623-protein ID=mRNA_2623-protein|Name=jgi.p|Nanoce1779_2|334274|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MMTDVKTRPPFPGIRDLSSLIYLSFPFLLSIHLSRACTFSSLACLSLPPT
LARILSASLSFSLFGFIHPTSFLETIYKSRGKILTVSPGVWDHSSSSSPP
LAAADAAVYADALAHLASAPVSVSTLFRALLFVSYLLHYCGGSLLFLTFL
NALDCVSWIWRFPRQNVNI*
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mRNA from alignment at scaffold_5:791711..792467-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2623 ID=mRNA_2623|Name=jgi.p|Nanoce1779_2|334274|organism=Nannochloropsis oceanica|type=mRNA|length=757bp|location=Sequence derived from alignment at scaffold_5:791711..792467- (Nannochloropsis oceanica)
TGTCATTGTTAGGGACCATTGGTTAAGAGTTGGGAAAAAAGGAGGGAGGG
AGAGAAGAAACGTGACGGAGGGTGCAAGTGCGCGCGACTTTTTTTCAAAA
ACAGAAGAAAAAAATGACTGAGGAAAGAATCAAACAGCAGCAGCTCTGAG
CAGTGGCAGTCTCTTTTTAAAAACAATGGGAAGAAGGAATGATGACAGAC
GTTAAAACTCGCCCGCCTTTCCCCGGTATACGCGACCTCTCGTCTCTTAT
TTATCTTTCGTTCCCTTTCCTTCTGTCGATCCATCTCTCAAGGGCGTGCA
CGTTTTCTTCACTTGCTTGCCTTTCACTTCCTCCCACACTCGCTCGTATT
CTTTCTGCCTCTCTCTCCTTCTCTCTTTTCGGTTTTATCCATCCCACTTC
TTTTCTCGAAACTATATATAAATCTCGGGGTAAAATTTTAACCGTCTCTC
CAGGAGTGTGGGATCATTCATCCTCCTCTTCTCCTCCTCTTGCAGCTGCC
GATGCTGCTGTTTACGCGGATGCGCTTGCTCATCTTGCCTCGGCGCCTGT
CTCTGTTTCCACGCTCTTTCGCGCTCTCCTTTTCGTGTCCTACCTTCTAC
ACTATTGTGGGGGTTCTCTTCTCTTCTTAACTTTTTTAAATGCTCTCGAT
TGCGTTTCTTGGATTTGGCGGTTTCCTCGTCAAAATGTTAATATCTAGCA
CACTGTCCTTTCCGTGGTCGCATAAGATGAAATAGTTTAACAAGATTACT
ACTAGTA
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Coding sequence (CDS) from alignment at scaffold_5:791711..792467-

>mRNA_2623 ID=mRNA_2623|Name=jgi.p|Nanoce1779_2|334274|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_5:791711..792467- (Nannochloropsis oceanica)
ATGATGACAGACGTTAAAACTCGCCCGCCTTTCCCCGGTATACGCGACCT
CTCGTCTCTTATTTATCTTTCGTTCCCTTTCCTTCTGTCGATCCATCTCT
CAAGGGCGTGCACGTTTTCTTCACTTGCTTGCCTTTCACTTCCTCCCACA
CTCGCTCGTATTCTTTCTGCCTCTCTCTCCTTCTCTCTTTTCGGTTTTAT
CCATCCCACTTCTTTTCTCGAAACTATATATAAATCTCGGGGTAAAATTT
TAACCGTCTCTCCAGGAGTGTGGGATCATTCATCCTCCTCTTCTCCTCCT
CTTGCAGCTGCCGATGCTGCTGTTTACGCGGATGCGCTTGCTCATCTTGC
CTCGGCGCCTGTCTCTGTTTCCACGCTCTTTCGCGCTCTCCTTTTCGTGT
CCTACCTTCTACACTATTGTGGGGGTTCTCTTCTCTTCTTAACTTTTTTA
AATGCTCTCGATTGCGTTTCTTGGATTTGGCGGTTTCCTCGTCAAAATGT
TAATATCTAG
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Synonyms
Publications