jgi.p|Nanoce1779_2|580971, mRNA_2622 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580971
Unique Name	mRNA_2622
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2520
Alignment location	scaffold_5:789740..792259 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581057
Track	FilteredModels2
ProteinId	580971

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:789740..792259 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580971	gene_2622	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580971	mRNA_2622-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2622	CDS_2622	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:789740..792259+
coding sequence from alignment at scaffold_5:789740..792259+

mRNA sequence

>mRNA_2622 ID=mRNA_2622|Name=jgi.p|Nanoce1779_2|580971|organism=Nannochloropsis oceanica|type=mRNA|length=2520bp
CAGGCGCCGGCAACACCCTCTTCCCTTGCCCGCTACCTAGCCCAAACCTC
AAGCCATGGCAGGCCACACGGAGGTGCAGGCGTCCACCCCACCGTACAAT
AGTAGCGGCAAAGGTATGAACATCACGATTGGTGAAGCTCATCGCACCGA
GGAGAAGCAGTCCAGGAAGATCGTGCGGGAAGCCAAGCAAGTCCTGGCCT
ACCAAGACAGCACCTTTTCCGACCAATTCAATGCCATGCGTGTCCTGACA
TTCGTCACCTTGGAGCATCCCCGCTCAAGTCGGCTTGCATGGTACATCTC
TATCTTTCTCGTGGGCTGCATCCTTCTCAACTCACTCGCCTTCATCAGCA
GCACCGTCCCTTCCGTCTTACGGTACCCGACCTCTTGCGCGAACCCAATC
TGCACCCCCGGACCCGACACAGTGTGTCCTGAAGTCGTCTGCCGACCTCT
GGAAAACCGCACTACATGGATGTTGGAGCTTATTACCATCATTATCTTCA
CCATCGACTACGTACTGCGTGTGTTTTGCGTGCCCCCTGTGCCCGTCGAT
CTGGTCTTCCCTCGCTCCCTCGAGTACACCATCGACGGGCGCCTTAAGGA
CCGCTCGCGCTACTACCGTATGTCAACCTGTCAGAAGGTGACCAAGTATG
TGACGTCAGGCCTTAATATCATCGACGTTGTCTCCATCGTCCCCTACTAC
ATCTCCCTCTTCGCCGGCGGATCCTATACTTTCCTCCGCATTTTCCGCTT
CCTGCGGTTTCTGCTAATCTTCAAGCTAGGGCGGCGTTTTAGGGAAGCTG
GTGCAATCATCTCCAGAACGCTCCGCGCCTCCCTTCCTGCCTTGCTTATC
TTCGTCTTTTTGACGACGGTCATGGCAGTGACTTTCGGCTCAATCATGTA
CTACTTTGAAGGAGGGGTTTATAGCGTCACTTTGGAGTTTCCATCTGGTG
GTTTCCTGAGACCCAATGCACGAAACACGGCCCTGGAACAATCGCCGTTT
ACGTCCATTATAATGGGCATCTATTGGTATATCGTGAATACAACCACACT
CGGCAATGCCGCCCTCTTCCCCACCACCACCGGCGGACGGATTGCCTCCT
GTTTTATCGCGTACTTTGGCCTCCTATCCCTCGCCCTGCCCATCACCATC
ATCGGCCAGAATTTCTCCCAGCAATACAACCTTGTCTACGCCGATCCCGA
CAGCCAACCCCATCTCTTCTACCCCCCGACCCCTCGCACCCCCAGAACGC
CGCGTCGGAAGGGCGGAGCCCCCGGCTCTGCAGACGGCTTTCTTGGCCAC
TCCATTGTCGGTGGCGGGAAAGAAGACTTGAGTTATGTCTCCCCTGAGCA
GGAAATCGAGGCATTGCGCGCAGAGTTCCAGCAGCAGGTCGACGGATTGC
GAATGCATATGCAGCAGCAAGGCTCCAAAGCCGCCTCTTCCGCCCCGTCG
CAGCAGGAGGTGGATTCGTTGAAGGCTTATGTGCAGCGAGAGATCAGCAG
CATGAGAACGGCGATGAATGGCGCGACCGACCGTGGACAGTTTCAACAAC
AGCCGCAACAGCCTCAACAACAGCATCAGCAGCAGCAGCAGCAGCAGGGA
TTTAGAGAGGGTGGATATGGGAGGATGTCCTCGGAAGATGTGGATACTAG
ATCGTTCCCGATGCCCGTGGGTCGGGAAACAGTGAGGGAGAATGTTTTCA
GGGAGCAAGGGAGGGAAACCAATTTCCGAGACAGAGAGAGCGCGGAGGCG
TTAAGGCAGAGGCAGAGGGAGGAGGAGGAGGAGAGAGAGAACCAGACGCA
GCGGTCTTTGAGGGAGGCGGAGATTAATAGTTTCAGGAATCAGATAACTG
AAGGTATTGGGAGGTTTAGTCCGCAGGCTGAGCTGGAGACGTTCCGAGGG
GGGTTGTATTAGGGTGTGAGAGACTGAATTGACAGAGATGAAAGAGATAT
GGAGGGAGAGAGAATATATTATACTAGTAGTAATCTTGTTAAACTATTTC
ATCTTATGCGACCACGGAAAGGACAGTGTGCTAGATATTAACATTTTGAC
GAGGAAACCGCCAAATCCAAGAAACGCAATCGAGAGCATTTAAAAAAGTT
AAGAAGAGAAGAGAACCCCCACAATAGTGTAGAAGGTAGGACACGAAAAG
GAGAGCGCGAAAGAGCGTGGAAACAGAGACAGGCGCCGAGGCAAGATGAG
CAAGCGCATCCGCGTAAACAGCAGCATCGGCAGCTGCAAGAGGAGGAGAA
GAGGAGGATGAATGATCCCACACTCCTGGAGAGACGGTTAAAATTTTACC
CCGAGATTTATATATAGTTTCGAGAAAAGAAGTGGGATGGATAAAACCGA
AAAGAGAGAAGGAGAGAGAGGCAGAAAGAATACGAGCGAGTGTGGGAGGA
AGTGAAAGGCAAGCAAGTGAAGAAAACGTGCACGCCCTTGAGAGATGGAT
CGACAGAAGGAAAGGGAACGAAAGATAAATAAGAGACGAGAGGTCGCGTA
TACCGGGGAAAGGCGGGCGA

protein sequence of jgi.p|Nanoce1779_2|580971

>mRNA_2622-protein ID=mRNA_2622-protein|Name=jgi.p|Nanoce1779_2|580971|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp
MAGHTEVQASTPPYNSSGKGMNITIGEAHRTEEKQSRKIVREAKQVLAYQ
DSTFSDQFNAMRVLTFVTLEHPRSSRLAWYISIFLVGCILLNSLAFISST
VPSVLRYPTSCANPICTPGPDTVCPEVVCRPLENRTTWMLELITIIIFTI
DYVLRVFCVPPVPVDLVFPRSLEYTIDGRLKDRSRYYRMSTCQKVTKYVT
SGLNIIDVVSIVPYYISLFAGGSYTFLRIFRFLRFLLIFKLGRRFREAGA
IISRTLRASLPALLIFVFLTTVMAVTFGSIMYYFEGGVYSVTLEFPSGGF
LRPNARNTALEQSPFTSIIMGIYWYIVNTTTLGNAALFPTTTGGRIASCF
IAYFGLLSLALPITIIGQNFSQQYNLVYADPDSQPHLFYPPTPRTPRTPR
RKGGAPGSADGFLGHSIVGGGKEDLSYVSPEQEIEALRAEFQQQVDGLRM
HMQQQGSKAASSAPSQQEVDSLKAYVQREISSMRTAMNGATDRGQFQQQP
QQPQQQHQQQQQQQGFREGGYGRMSSEDVDTRSFPMPVGRETVRENVFRE
QGRETNFRDRESAEALRQRQREEEEERENQTQRSLREAEINSFRNQITEG
IGRFSPQAELETFRGGLY*

mRNA from alignment at scaffold_5:789740..792259+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2622 ID=mRNA_2622|Name=jgi.p|Nanoce1779_2|580971|organism=Nannochloropsis oceanica|type=mRNA|length=2520bp|location=Sequence derived from alignment at scaffold_5:789740..792259+ (Nannochloropsis oceanica)
CAGGCGCCGGCAACACCCTCTTCCCTTGCCCGCTACCTAGCCCAAACCTC
AAGCCATGGCAGGCCACACGGAGGTGCAGGCGTCCACCCCACCGTACAAT
AGTAGCGGCAAAGGTATGAACATCACGATTGGTGAAGCTCATCGCACCGA
GGAGAAGCAGTCCAGGAAGATCGTGCGGGAAGCCAAGCAAGTCCTGGCCT
ACCAAGACAGCACCTTTTCCGACCAATTCAATGCCATGCGTGTCCTGACA
TTCGTCACCTTGGAGCATCCCCGCTCAAGTCGGCTTGCATGGTACATCTC
TATCTTTCTCGTGGGCTGCATCCTTCTCAACTCACTCGCCTTCATCAGCA
GCACCGTCCCTTCCGTCTTACGGTACCCGACCTCTTGCGCGAACCCAATC
TGCACCCCCGGACCCGACACAGTGTGTCCTGAAGTCGTCTGCCGACCTCT
GGAAAACCGCACTACATGGATGTTGGAGCTTATTACCATCATTATCTTCA
CCATCGACTACGTACTGCGTGTGTTTTGCGTGCCCCCTGTGCCCGTCGAT
CTGGTCTTCCCTCGCTCCCTCGAGTACACCATCGACGGGCGCCTTAAGGA
CCGCTCGCGCTACTACCGTATGTCAACCTGTCAGAAGGTGACCAAGTATG
TGACGTCAGGCCTTAATATCATCGACGTTGTCTCCATCGTCCCCTACTAC
ATCTCCCTCTTCGCCGGCGGATCCTATACTTTCCTCCGCATTTTCCGCTT
CCTGCGGTTTCTGCTAATCTTCAAGCTAGGGCGGCGTTTTAGGGAAGCTG
GTGCAATCATCTCCAGAACGCTCCGCGCCTCCCTTCCTGCCTTGCTTATC
TTCGTCTTTTTGACGACGGTCATGGCAGTGACTTTCGGCTCAATCATGTA
CTACTTTGAAGGAGGGGTTTATAGCGTCACTTTGGAGTTTCCATCTGGTG
GTTTCCTGAGACCCAATGCACGAAACACGGCCCTGGAACAATCGCCGTTT
ACGTCCATTATAATGGGCATCTATTGGTATATCGTGAATACAACCACACT
CGGCAATGCCGCCCTCTTCCCCACCACCACCGGCGGACGGATTGCCTCCT
GTTTTATCGCGTACTTTGGCCTCCTATCCCTCGCCCTGCCCATCACCATC
ATCGGCCAGAATTTCTCCCAGCAATACAACCTTGTCTACGCCGATCCCGA
CAGCCAACCCCATCTCTTCTACCCCCCGACCCCTCGCACCCCCAGAACGC
CGCGTCGGAAGGGCGGAGCCCCCGGCTCTGCAGACGGCTTTCTTGGCCAC
TCCATTGTCGGTGGCGGGAAAGAAGACTTGAGTTATGTCTCCCCTGAGCA
GGAAATCGAGGCATTGCGCGCAGAGTTCCAGCAGCAGGTCGACGGATTGC
GAATGCATATGCAGCAGCAAGGCTCCAAAGCCGCCTCTTCCGCCCCGTCG
CAGCAGGAGGTGGATTCGTTGAAGGCTTATGTGCAGCGAGAGATCAGCAG
CATGAGAACGGCGATGAATGGCGCGACCGACCGTGGACAGTTTCAACAAC
AGCCGCAACAGCCTCAACAACAGCATCAGCAGCAGCAGCAGCAGCAGGGA
TTTAGAGAGGGTGGATATGGGAGGATGTCCTCGGAAGATGTGGATACTAG
ATCGTTCCCGATGCCCGTGGGTCGGGAAACAGTGAGGGAGAATGTTTTCA
GGGAGCAAGGGAGGGAAACCAATTTCCGAGACAGAGAGAGCGCGGAGGCG
TTAAGGCAGAGGCAGAGGGAGGAGGAGGAGGAGAGAGAGAACCAGACGCA
GCGGTCTTTGAGGGAGGCGGAGATTAATAGTTTCAGGAATCAGATAACTG
AAGGTATTGGGAGGTTTAGTCCGCAGGCTGAGCTGGAGACGTTCCGAGGG
GGGTTGTATTAGGGTGTGAGAGACTGAATTGACAGAGATGAAAGAGATAT
GGAGGGAGAGAGAATATATTATACTAGTAGTAATCTTGTTAAACTATTTC
ATCTTATGCGACCACGGAAAGGACAGTGTGCTAGATATTAACATTTTGAC
GAGGAAACCGCCAAATCCAAGAAACGCAATCGAGAGCATTTAAAAAAGTT
AAGAAGAGAAGAGAACCCCCACAATAGTGTAGAAGGTAGGACACGAAAAG
GAGAGCGCGAAAGAGCGTGGAAACAGAGACAGGCGCCGAGGCAAGATGAG
CAAGCGCATCCGCGTAAACAGCAGCATCGGCAGCTGCAAGAGGAGGAGAA
GAGGAGGATGAATGATCCCACACTCCTGGAGAGACGGTTAAAATTTTACC
CCGAGATTTATATATAGTTTCGAGAAAAGAAGTGGGATGGATAAAACCGA
AAAGAGAGAAGGAGAGAGAGGCAGAAAGAATACGAGCGAGTGTGGGAGGA
AGTGAAAGGCAAGCAAGTGAAGAAAACGTGCACGCCCTTGAGAGATGGAT
CGACAGAAGGAAAGGGAACGAAAGATAAATAAGAGACGAGAGGTCGCGTA
TACCGGGGAAAGGCGGGCGA

Coding sequence (CDS) from alignment at scaffold_5:789740..792259+

>mRNA_2622 ID=mRNA_2622|Name=jgi.p|Nanoce1779_2|580971|organism=Nannochloropsis oceanica|type=CDS|length=1857bp|location=Sequence derived from alignment at scaffold_5:789740..792259+ (Nannochloropsis oceanica)
ATGGCAGGCCACACGGAGGTGCAGGCGTCCACCCCACCGTACAATAGTAG
CGGCAAAGGTATGAACATCACGATTGGTGAAGCTCATCGCACCGAGGAGA
AGCAGTCCAGGAAGATCGTGCGGGAAGCCAAGCAAGTCCTGGCCTACCAA
GACAGCACCTTTTCCGACCAATTCAATGCCATGCGTGTCCTGACATTCGT
CACCTTGGAGCATCCCCGCTCAAGTCGGCTTGCATGGTACATCTCTATCT
TTCTCGTGGGCTGCATCCTTCTCAACTCACTCGCCTTCATCAGCAGCACC
GTCCCTTCCGTCTTACGGTACCCGACCTCTTGCGCGAACCCAATCTGCAC
CCCCGGACCCGACACAGTGTGTCCTGAAGTCGTCTGCCGACCTCTGGAAA
ACCGCACTACATGGATGTTGGAGCTTATTACCATCATTATCTTCACCATC
GACTACGTACTGCGTGTGTTTTGCGTGCCCCCTGTGCCCGTCGATCTGGT
CTTCCCTCGCTCCCTCGAGTACACCATCGACGGGCGCCTTAAGGACCGCT
CGCGCTACTACCGTATGTCAACCTGTCAGAAGGTGACCAAGTATGTGACG
TCAGGCCTTAATATCATCGACGTTGTCTCCATCGTCCCCTACTACATCTC
CCTCTTCGCCGGCGGATCCTATACTTTCCTCCGCATTTTCCGCTTCCTGC
GGTTTCTGCTAATCTTCAAGCTAGGGCGGCGTTTTAGGGAAGCTGGTGCA
ATCATCTCCAGAACGCTCCGCGCCTCCCTTCCTGCCTTGCTTATCTTCGT
CTTTTTGACGACGGTCATGGCAGTGACTTTCGGCTCAATCATGTACTACT
TTGAAGGAGGGGTTTATAGCGTCACTTTGGAGTTTCCATCTGGTGGTTTC
CTGAGACCCAATGCACGAAACACGGCCCTGGAACAATCGCCGTTTACGTC
CATTATAATGGGCATCTATTGGTATATCGTGAATACAACCACACTCGGCA
ATGCCGCCCTCTTCCCCACCACCACCGGCGGACGGATTGCCTCCTGTTTT
ATCGCGTACTTTGGCCTCCTATCCCTCGCCCTGCCCATCACCATCATCGG
CCAGAATTTCTCCCAGCAATACAACCTTGTCTACGCCGATCCCGACAGCC
AACCCCATCTCTTCTACCCCCCGACCCCTCGCACCCCCAGAACGCCGCGT
CGGAAGGGCGGAGCCCCCGGCTCTGCAGACGGCTTTCTTGGCCACTCCAT
TGTCGGTGGCGGGAAAGAAGACTTGAGTTATGTCTCCCCTGAGCAGGAAA
TCGAGGCATTGCGCGCAGAGTTCCAGCAGCAGGTCGACGGATTGCGAATG
CATATGCAGCAGCAAGGCTCCAAAGCCGCCTCTTCCGCCCCGTCGCAGCA
GGAGGTGGATTCGTTGAAGGCTTATGTGCAGCGAGAGATCAGCAGCATGA
GAACGGCGATGAATGGCGCGACCGACCGTGGACAGTTTCAACAACAGCCG
CAACAGCCTCAACAACAGCATCAGCAGCAGCAGCAGCAGCAGGGATTTAG
AGAGGGTGGATATGGGAGGATGTCCTCGGAAGATGTGGATACTAGATCGT
TCCCGATGCCCGTGGGTCGGGAAACAGTGAGGGAGAATGTTTTCAGGGAG
CAAGGGAGGGAAACCAATTTCCGAGACAGAGAGAGCGCGGAGGCGTTAAG
GCAGAGGCAGAGGGAGGAGGAGGAGGAGAGAGAGAACCAGACGCAGCGGT
CTTTGAGGGAGGCGGAGATTAATAGTTTCAGGAATCAGATAACTGAAGGT
ATTGGGAGGTTTAGTCCGCAGGCTGAGCTGGAGACGTTCCGAGGGGGGTT
GTATTAG

Synonyms

Publications