jgi.p|Nanoce1779_2|580969, mRNA_2621 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580969
Unique NamemRNA_2621
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1945
Alignment locationscaffold_5:786978..788922 -

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Properties
Property NameValue
TranscriptId581055
TrackFilteredModels2
ProteinId580969
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:786978..788922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580969gene_2621Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580969mRNA_2621-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2621CDS_2621Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2621 ID=mRNA_2621|Name=jgi.p|Nanoce1779_2|580969|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp
CAGGTGCTACAGAACACACAGAACCGCCCCATTCTCGAGCTTTGGTTATG
TGTCCTTCAGATGCCAGTGGATGCGTTTGTCTGGCTTTGCTCCTCGTAGC
AATTGCCACAACAGCCGCCCCTGCGCCCTTATCTGGAGCGCCTGCCGAAA
GCGATACCTCCAGCAGCATCCCGAATGTGCGCGGCGCTTCTCCCCCCGGA
TCGTCGTCACAGACACAGAAGCTGACATCGCAATCATCGCCTAAAGACAT
TGGCTGGACCTGGCCGTCGTGGGATAGCAGAAAAAACAATGCCAGCGGTA
CCGCCGCCAGCGCCATTACAGACAACGAGAACATTGATTATTCAGACTAT
ACAAGAAAGAATGGTGCGGCAACCGCGCCCGCCGGAGAGTATCCCGCTTG
TTTCATCCAAGCGTCCATGAACAAGGATGGCTTAATCTGCATGGCGGGCT
CCGGCTGGCTGGCATTGACCCAGCTTTTACCCCCTCAATTGGGCTCGGGG
GCGGAGGTCCGTGCTCCTGTCGATCCAAACAAGGAACTCCCCCGGCTCTT
GGCCAAGATCCCTATGCCCTTGCCCGCCATTGTGCCAGCGGCACTAAGCA
AGGCAGAGAGACCCACATACTACTTCATGTATCGAACCATTTTGAATTTT
TACGCGGCTGTTGGCTTGGGCGGCGTGGGCGGCAGCGGCGCGATGCTGGA
CTTAGGTCTGCCGGCAGAATGGACCAATCAGAGGGAGTACACCTTGCAGA
ACACCAACAGCGTGATTGCCGGAGTCCTGCAGCAACAGGTGCCGTTTGCT
GTGAGCTATACGAGAGGGGATGAAATGCTCGTGGTGGTGCGGGGTACGAT
TTATCCAGCAGAGTGGCAACGTGATTTTCAGTACCAGCATGCAAAGCCCT
CCGAGACAGCGCCTTTCAAATTTCCGGGTAACGTGCACGCGGGTTTCTTT
GCTGTTTTCAAAGATTTGGCAGAGCTGTTGATCGATGAGGAGATTAAGAC
ACGCGCGCCTAAGAAGGTGACGTTTACAGGGCATTCCCTGGGGGGGTCGG
TGGCGGCATTGCTAGCGTTCTACGCAAGTATGTTCGTCGCGACCACGGAG
TTAATTTCGTTCGGAGCCCCCAATGTGGGCGATGCAACGTTTTCTGAGGC
TTTCAATGTCAGGGTGAATAATCGGCATTTGGCCTTTTCAGGGGTGGGCA
GTCGCGAGGGTTCTTACTTGATTGGTGATTGGATCGCCCAGGTACCTTGT
GGGGCGGTCACGACCTGCCCGCTGCTGACGGAGATGAGCTCAATAAATGT
TGGTCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGGTTC
AGGTGCAGCAGGAAGAAGTGTCGTATGACTATACAGCTCTGGGCGGGGCA
GTCCCATTTACGCCTGCGGATATGTTAAACAATTTGACATGGGCGACCCG
CTCCGACGTGACGAGCTTTCGGTATTCACCCGTGGCGTCTCATGTGTGTA
GTTATTTGTGTTTTACTGCTCCATCGGTGGGGGATGATTATAATCAATGT
GTGTTTACGCTGGAGATGAGTGACGTGGATATGAATAAGCGATGTGTGAT
AAACTTGTAATTGAGGGAGGAAGGTAGGAAGAGGATGTTGAGAAGGGGTT
GTGGCCTGAGAGTCGGAACAGCGGGAGTGTGCGTTCAGAGTACAAGTTGT
CTTGTGCTTGTTTGTACACATTTCCAAGACCCTGCTCGGAGATGTACCTA
GGTGGTTGGGCTACGTGTTGCATTGAGGAAAGTCAAAAAGTTAATTGGCT
GAAAAGGAAAAGCGGAAAGTTTTCGACACTCTGAACAGTAACATACCGCG
CGCAAAGCAAATGAAAAGGGTGACTATTGCTCTTTGGACGCGATAGAGCA
CGCAAAGTTAAAAAAACTTAACGACTACGAAAAGTAAGAATGAAC
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protein sequence of jgi.p|Nanoce1779_2|580969

>mRNA_2621-protein ID=mRNA_2621-protein|Name=jgi.p|Nanoce1779_2|580969|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MCPSDASGCVCLALLLVAIATTAAPAPLSGAPAESDTSSSIPNVRGASPP
GSSSQTQKLTSQSSPKDIGWTWPSWDSRKNNASGTAASAITDNENIDYSD
YTRKNGAATAPAGEYPACFIQASMNKDGLICMAGSGWLALTQLLPPQLGS
GAEVRAPVDPNKELPRLLAKIPMPLPAIVPAALSKAERPTYYFMYRTILN
FYAAVGLGGVGGSGAMLDLGLPAEWTNQREYTLQNTNSVIAGVLQQQVPF
AVSYTRGDEMLVVVRGTIYPAEWQRDFQYQHAKPSETAPFKFPGNVHAGF
FAVFKDLAELLIDEEIKTRAPKKVTFTGHSLGGSVAALLAFYASMFVATT
ELISFGAPNVGDATFSEAFNVRVNNRHLAFSGVGSREGSYLIGDWIAQVP
CGAVTTCPLLTEMSSINVGQQQQQQQQQQQQQEVQVQQEEVSYDYTALGG
AVPFTPADMLNNLTWATRSDVTSFRYSPVASHVCSYLCFTAPSVGDDYNQ
CVFTLEMSDVDMNKRCVINL*
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mRNA from alignment at scaffold_5:786978..788922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2621 ID=mRNA_2621|Name=jgi.p|Nanoce1779_2|580969|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp|location=Sequence derived from alignment at scaffold_5:786978..788922- (Nannochloropsis oceanica)
CAGGTGCTACAGAACACACAGAACCGCCCCATTCTCGAGCTTTGGTTATG
TGTCCTTCAGATGCCAGTGGATGCGTTTGTCTGGCTTTGCTCCTCGTAGC
AATTGCCACAACAGCCGCCCCTGCGCCCTTATCTGGAGCGCCTGCCGAAA
GCGATACCTCCAGCAGCATCCCGAATGTGCGCGGCGCTTCTCCCCCCGGA
TCGTCGTCACAGACACAGAAGCTGACATCGCAATCATCGCCTAAAGACAT
TGGCTGGACCTGGCCGTCGTGGGATAGCAGAAAAAACAATGCCAGCGGTA
CCGCCGCCAGCGCCATTACAGACAACGAGAACATTGATTATTCAGACTAT
ACAAGAAAGAATGGTGCGGCAACCGCGCCCGCCGGAGAGTATCCCGCTTG
TTTCATCCAAGCGTCCATGAACAAGGATGGCTTAATCTGCATGGCGGGCT
CCGGCTGGCTGGCATTGACCCAGCTTTTACCCCCTCAATTGGGCTCGGGG
GCGGAGGTCCGTGCTCCTGTCGATCCAAACAAGGAACTCCCCCGGCTCTT
GGCCAAGATCCCTATGCCCTTGCCCGCCATTGTGCCAGCGGCACTAAGCA
AGGCAGAGAGACCCACATACTACTTCATGTATCGAACCATTTTGAATTTT
TACGCGGCTGTTGGCTTGGGCGGCGTGGGCGGCAGCGGCGCGATGCTGGA
CTTAGGTCTGCCGGCAGAATGGACCAATCAGAGGGAGTACACCTTGCAGA
ACACCAACAGCGTGATTGCCGGAGTCCTGCAGCAACAGGTGCCGTTTGCT
GTGAGCTATACGAGAGGGGATGAAATGCTCGTGGTGGTGCGGGGTACGAT
TTATCCAGCAGAGTGGCAACGTGATTTTCAGTACCAGCATGCAAAGCCCT
CCGAGACAGCGCCTTTCAAATTTCCGGGTAACGTGCACGCGGGTTTCTTT
GCTGTTTTCAAAGATTTGGCAGAGCTGTTGATCGATGAGGAGATTAAGAC
ACGCGCGCCTAAGAAGGTGACGTTTACAGGGCATTCCCTGGGGGGGTCGG
TGGCGGCATTGCTAGCGTTCTACGCAAGTATGTTCGTCGCGACCACGGAG
TTAATTTCGTTCGGAGCCCCCAATGTGGGCGATGCAACGTTTTCTGAGGC
TTTCAATGTCAGGGTGAATAATCGGCATTTGGCCTTTTCAGGGGTGGGCA
GTCGCGAGGGTTCTTACTTGATTGGTGATTGGATCGCCCAGGTACCTTGT
GGGGCGGTCACGACCTGCCCGCTGCTGACGGAGATGAGCTCAATAAATGT
TGGTCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGGTTC
AGGTGCAGCAGGAAGAAGTGTCGTATGACTATACAGCTCTGGGCGGGGCA
GTCCCATTTACGCCTGCGGATATGTTAAACAATTTGACATGGGCGACCCG
CTCCGACGTGACGAGCTTTCGGTATTCACCCGTGGCGTCTCATGTGTGTA
GTTATTTGTGTTTTACTGCTCCATCGGTGGGGGATGATTATAATCAATGT
GTGTTTACGCTGGAGATGAGTGACGTGGATATGAATAAGCGATGTGTGAT
AAACTTGTAATTGAGGGAGGAAGGTAGGAAGAGGATGTTGAGAAGGGGTT
GTGGCCTGAGAGTCGGAACAGCGGGAGTGTGCGTTCAGAGTACAAGTTGT
CTTGTGCTTGTTTGTACACATTTCCAAGACCCTGCTCGGAGATGTACCTA
GGTGGTTGGGCTACGTGTTGCATTGAGGAAAGTCAAAAAGTTAATTGGCT
GAAAAGGAAAAGCGGAAAGTTTTCGACACTCTGAACAGTAACATACCGCG
CGCAAAGCAAATGAAAAGGGTGACTATTGCTCTTTGGACGCGATAGAGCA
CGCAAAGTTAAAAAAACTTAACGACTACGAAAAGTAAGAATGAAC
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Coding sequence (CDS) from alignment at scaffold_5:786978..788922-

>mRNA_2621 ID=mRNA_2621|Name=jgi.p|Nanoce1779_2|580969|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at scaffold_5:786978..788922- (Nannochloropsis oceanica)
ATGTGTCCTTCAGATGCCAGTGGATGCGTTTGTCTGGCTTTGCTCCTCGT
AGCAATTGCCACAACAGCCGCCCCTGCGCCCTTATCTGGAGCGCCTGCCG
AAAGCGATACCTCCAGCAGCATCCCGAATGTGCGCGGCGCTTCTCCCCCC
GGATCGTCGTCACAGACACAGAAGCTGACATCGCAATCATCGCCTAAAGA
CATTGGCTGGACCTGGCCGTCGTGGGATAGCAGAAAAAACAATGCCAGCG
GTACCGCCGCCAGCGCCATTACAGACAACGAGAACATTGATTATTCAGAC
TATACAAGAAAGAATGGTGCGGCAACCGCGCCCGCCGGAGAGTATCCCGC
TTGTTTCATCCAAGCGTCCATGAACAAGGATGGCTTAATCTGCATGGCGG
GCTCCGGCTGGCTGGCATTGACCCAGCTTTTACCCCCTCAATTGGGCTCG
GGGGCGGAGGTCCGTGCTCCTGTCGATCCAAACAAGGAACTCCCCCGGCT
CTTGGCCAAGATCCCTATGCCCTTGCCCGCCATTGTGCCAGCGGCACTAA
GCAAGGCAGAGAGACCCACATACTACTTCATGTATCGAACCATTTTGAAT
TTTTACGCGGCTGTTGGCTTGGGCGGCGTGGGCGGCAGCGGCGCGATGCT
GGACTTAGGTCTGCCGGCAGAATGGACCAATCAGAGGGAGTACACCTTGC
AGAACACCAACAGCGTGATTGCCGGAGTCCTGCAGCAACAGGTGCCGTTT
GCTGTGAGCTATACGAGAGGGGATGAAATGCTCGTGGTGGTGCGGGGTAC
GATTTATCCAGCAGAGTGGCAACGTGATTTTCAGTACCAGCATGCAAAGC
CCTCCGAGACAGCGCCTTTCAAATTTCCGGGTAACGTGCACGCGGGTTTC
TTTGCTGTTTTCAAAGATTTGGCAGAGCTGTTGATCGATGAGGAGATTAA
GACACGCGCGCCTAAGAAGGTGACGTTTACAGGGCATTCCCTGGGGGGGT
CGGTGGCGGCATTGCTAGCGTTCTACGCAAGTATGTTCGTCGCGACCACG
GAGTTAATTTCGTTCGGAGCCCCCAATGTGGGCGATGCAACGTTTTCTGA
GGCTTTCAATGTCAGGGTGAATAATCGGCATTTGGCCTTTTCAGGGGTGG
GCAGTCGCGAGGGTTCTTACTTGATTGGTGATTGGATCGCCCAGGTACCT
TGTGGGGCGGTCACGACCTGCCCGCTGCTGACGGAGATGAGCTCAATAAA
TGTTGGTCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGG
TTCAGGTGCAGCAGGAAGAAGTGTCGTATGACTATACAGCTCTGGGCGGG
GCAGTCCCATTTACGCCTGCGGATATGTTAAACAATTTGACATGGGCGAC
CCGCTCCGACGTGACGAGCTTTCGGTATTCACCCGTGGCGTCTCATGTGT
GTAGTTATTTGTGTTTTACTGCTCCATCGGTGGGGGATGATTATAATCAA
TGTGTGTTTACGCTGGAGATGAGTGACGTGGATATGAATAAGCGATGTGT
GATAAACTTGTAA
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Synonyms
Publications