jgi.p|Nanoce1779_2|580968, mRNA_2620 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580968
Unique Name	mRNA_2620
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1648
Alignment location	scaffold_5:785203..786954 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581054
Track	FilteredModels2
ProteinId	580968

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:785203..786954 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580968	gene_2620	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580968	mRNA_2620-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2620	CDS_2620	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:785203..786954+
coding sequence from alignment at scaffold_5:785203..786954+

mRNA sequence

>mRNA_2620 ID=mRNA_2620|Name=jgi.p|Nanoce1779_2|580968|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp
CAGCACACAGCCCCTCCTTCCTTGATACACACAAACGACGACACGGGCGA
ACCAACATTAGCCACCTTTCTGCCTTCCTATTCCGAATGCCCGTCAGCTA
CGCGATGCTTCCCTTATTTGACGCCGAGTCTTTCTCGACTTCGGCCGTGA
TGGTCGTCATGGTAGTCGTACTGCTCGCCCTGTTGATGGTTGTTAAGCCC
TCCTCCTCCTCCTGCTCAATCAAGCTCGACCCCAAGGCCCCTGTCCCCAT
CCTTGTCGAAGTCCCCGACGAGGTTCTGTACCGCCGCCTCAAGTATAAGC
TCCCTAAAAAAGCGATGGTCACTGGCGGGAACGGTTTTGTGGGCCGGCGC
ATTGTCTCAATGCTCCTCGAACAAGGCTGCGAAGTCACCGTCTTTGACAT
CTCGGGGGGGTTCCAAAACGAACCCCGCGTCAAGATGGTGGTCGGCAACC
TAGTCGATCCAGTCGATGTCGCCAAGGCCGTGGCAGGCATCGAGGTTGTC
TATCATGTGGCAGCTCCCCATGCCTCCCATCCTCCTGCTGTCCAATATGC
GGTCAACGTGACCGGCACCCAAAACCTCCTTCAAGCTTCCGCCGCCGCTG
GGGTCAAACGTTTTGTGTTTACCTCTTCTGCCAGTGTCGTCTACGAGGGA
AGAGATCAAGCAGGCGCGGATGAAGCTACACCTATCCCTACCGCTAGTCT
TGACTCTTACACCAAAACAAAAGCCGAAGCAGAGGCGTTGGTCCTAGCAG
CAAACGGACAAGAAGGCATGCTAACCGCCGCCATTCGCCCCCATGGGATC
TTCGGACCTGGTGACCGGCAATTTTTTCCCGTCCTTGTGGAAAGTGCGCG
GAAAGGGAAGACTAAGTATGCCTTGGGGGAGGGGAAGAATGTAGCTGACT
TCACGTTTGTGGGTAACGTTGCTCATGCCCACTTGCTGGCCGCGGAGAAG
CTAGGGGTGGTGAAAGGCGTAGACGGGCAGGCATTTTTTATCACAAATGA
TGCGCCTTTGCCTTTTTGGGATTTTCTGGCAAAGGTATTGACGGGTTTTG
GGTATGCAGCGCCGAGTGTGCGACTGCCAGCGGGGGCCATGGCGGTGATA
GGAGGGGGGATGGACGGCTTGGCCGCGATTTTGAGGAAGATTGGCGTGGT
GTTTCAACCGACATTCACACGGTCTAGGGTGCAGTACCTGACAACACACC
ATTATTATAGCATTGAGAAGGCGAAGCGTCTGTTGGGGTACGAGCCGGCC
TGGACGCAAGAAGAGGCTTTGGCGTTGTGTTTCCAGGAGATGATGCCCGA
GCTTGTGAACTCACGCGCGCCAAAGCCTCGACGGGCAACAGTGAAGAAAT
GGGAGGTCATCCCGAGATTTACGATGGAACAGGTTGCGAGGCATAAGAAG
AGAGAGGATGCGTGGATCGTCGTTGATGGGAAGGTTTATGACGTGACTGA
GTACGTGGATGTCCACCCGGGGGACGACGCGATATTGAATTTCGTTGGCC
AAGATTCTAGTAAGGGCTTCCACGGGCCGCAGCACCCTGTAAGTGTGTGG
GATGTGATTGCCGAGTATGAGATTGGGGCGCTGGCATAGTTTGGAAAGTA
AGAGGAAGGAGAGGAGGGAAGGACAAAAGTAAAATTGATTTATTTTTA

protein sequence of jgi.p|Nanoce1779_2|580968

>mRNA_2620-protein ID=mRNA_2620-protein|Name=jgi.p|Nanoce1779_2|580968|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MPVSYAMLPLFDAESFSTSAVMVVMVVVLLALLMVVKPSSSSCSIKLDPK
APVPILVEVPDEVLYRRLKYKLPKKAMVTGGNGFVGRRIVSMLLEQGCEV
TVFDISGGFQNEPRVKMVVGNLVDPVDVAKAVAGIEVVYHVAAPHASHPP
AVQYAVNVTGTQNLLQASAAAGVKRFVFTSSASVVYEGRDQAGADEATPI
PTASLDSYTKTKAEAEALVLAANGQEGMLTAAIRPHGIFGPGDRQFFPVL
VESARKGKTKYALGEGKNVADFTFVGNVAHAHLLAAEKLGVVKGVDGQAF
FITNDAPLPFWDFLAKVLTGFGYAAPSVRLPAGAMAVIGGGMDGLAAILR
KIGVVFQPTFTRSRVQYLTTHHYYSIEKAKRLLGYEPAWTQEEALALCFQ
EMMPELVNSRAPKPRRATVKKWEVIPRFTMEQVARHKKREDAWIVVDGKV
YDVTEYVDVHPGDDAILNFVGQDSSKGFHGPQHPVSVWDVIAEYEIGALA
*

mRNA from alignment at scaffold_5:785203..786954+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2620 ID=mRNA_2620|Name=jgi.p|Nanoce1779_2|580968|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp|location=Sequence derived from alignment at scaffold_5:785203..786954+ (Nannochloropsis oceanica)
CAGCACACAGCCCCTCCTTCCTTGATACACACAAACGACGACACGGGCGA
ACCAACATTAGCCACCTTTCTGCCTTCCTATTCCGAATGCCCGTCAGCTA
CGCGATGCTTCCCTTATTTGACGCCGAGTCTTTCTCGACTTCGGCCGTGA
TGGTCGTCATGGTAGTCGTACTGCTCGCCCTGTTGATGGTTGTTAAGGTA
TGTGTAGTCTATGCTGTGCCAATCAGAGGGTTGGGACATCAAAGGCTTGC
TCCTCCTACCATACTCATCTCCCCTCTTCCCTCCGACCTCCTACACACCA
GCCCTCCTCCTCCTCCTGCTCAATCAAGCTCGACCCCAAGGCCCCTGTCC
CCATCCTTGTCGAAGTCCCCGACGAGGTTCTGTACCGCCGCCTCAAGTAT
AAGCTCCCTAAAAAAGCGATGGTCACTGGCGGGAACGGTTTTGTGGGCCG
GCGCATTGTCTCAATGCTCCTCGAACAAGGCTGCGAAGTCACCGTCTTTG
ACATCTCGGGGGGGTTCCAAAACGAACCCCGCGTCAAGATGGTGGTCGGC
AACCTAGTCGATCCAGTCGATGTCGCCAAGGCCGTGGCAGGCATCGAGGT
TGTCTATCATGTGGCAGCTCCCCATGCCTCCCATCCTCCTGCTGTCCAAT
ATGCGGTCAACGTGACCGGCACCCAAAACCTCCTTCAAGCTTCCGCCGCC
GCTGGGGTCAAACGTTTTGTGTTTACCTCTTCTGCCAGTGTCGTCTACGA
GGGAAGAGATCAAGCAGGCGCGGATGAAGCTACACCTATCCCTACCGCTA
GTCTTGACTCTTACACCAAAACAAAAGCCGAAGCAGAGGCGTTGGTCCTA
GCAGCAAACGGACAAGAAGGCATGCTAACCGCCGCCATTCGCCCCCATGG
GATCTTCGGACCTGGTGACCGGCAATTTTTTCCCGTCCTTGTGGAAAGTG
CGCGGAAAGGGAAGACTAAGTATGCCTTGGGGGAGGGGAAGAATGTAGCT
GACTTCACGTTTGTGGGTAACGTTGCTCATGCCCACTTGCTGGCCGCGGA
GAAGCTAGGGGTGGTGAAAGGCGTAGACGGGCAGGCATTTTTTATCACAA
ATGATGCGCCTTTGCCTTTTTGGGATTTTCTGGCAAAGGTATTGACGGGT
TTTGGGTATGCAGCGCCGAGTGTGCGACTGCCAGCGGGGGCCATGGCGGT
GATAGGAGGGGGGATGGACGGCTTGGCCGCGATTTTGAGGAAGATTGGCG
TGGTGTTTCAACCGACATTCACACGGTCTAGGGTGCAGTACCTGACAACA
CACCATTATTATAGCATTGAGAAGGCGAAGCGTCTGTTGGGGTACGAGCC
GGCCTGGACGCAAGAAGAGGCTTTGGCGTTGTGTTTCCAGGAGATGATGC
CCGAGCTTGTGAACTCACGCGCGCCAAAGCCTCGACGGGCAACAGTGAAG
AAATGGGAGGTCATCCCGAGATTTACGATGGAACAGGTTGCGAGGCATAA
GAAGAGAGAGGATGCGTGGATCGTCGTTGATGGGAAGGTTTATGACGTGA
CTGAGTACGTGGATGTCCACCCGGGGGACGACGCGATATTGAATTTCGTT
GGCCAAGATTCTAGTAAGGGCTTCCACGGGCCGCAGCACCCTGTAAGTGT
GTGGGATGTGATTGCCGAGTATGAGATTGGGGCGCTGGCATAGTTTGGAA
AGTAAGAGGAAGGAGAGGAGGGAAGGACAAAAGTAAAATTGATTTATTTT
TA

Coding sequence (CDS) from alignment at scaffold_5:785203..786954+

>mRNA_2620 ID=mRNA_2620|Name=jgi.p|Nanoce1779_2|580968|organism=Nannochloropsis oceanica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_5:785203..786954+ (Nannochloropsis oceanica)
ATGCCCGTCAGCTACGCGATGCTTCCCTTATTTGACGCCGAGTCTTTCTC
GACTTCGGCCGTGATGGTCGTCATGGTAGTCGTACTGCTCGCCCTGTTGA
TGGTTGTTAAGCCCTCCTCCTCCTCCTGCTCAATCAAGCTCGACCCCAAG
GCCCCTGTCCCCATCCTTGTCGAAGTCCCCGACGAGGTTCTGTACCGCCG
CCTCAAGTATAAGCTCCCTAAAAAAGCGATGGTCACTGGCGGGAACGGTT
TTGTGGGCCGGCGCATTGTCTCAATGCTCCTCGAACAAGGCTGCGAAGTC
ACCGTCTTTGACATCTCGGGGGGGTTCCAAAACGAACCCCGCGTCAAGAT
GGTGGTCGGCAACCTAGTCGATCCAGTCGATGTCGCCAAGGCCGTGGCAG
GCATCGAGGTTGTCTATCATGTGGCAGCTCCCCATGCCTCCCATCCTCCT
GCTGTCCAATATGCGGTCAACGTGACCGGCACCCAAAACCTCCTTCAAGC
TTCCGCCGCCGCTGGGGTCAAACGTTTTGTGTTTACCTCTTCTGCCAGTG
TCGTCTACGAGGGAAGAGATCAAGCAGGCGCGGATGAAGCTACACCTATC
CCTACCGCTAGTCTTGACTCTTACACCAAAACAAAAGCCGAAGCAGAGGC
GTTGGTCCTAGCAGCAAACGGACAAGAAGGCATGCTAACCGCCGCCATTC
GCCCCCATGGGATCTTCGGACCTGGTGACCGGCAATTTTTTCCCGTCCTT
GTGGAAAGTGCGCGGAAAGGGAAGACTAAGTATGCCTTGGGGGAGGGGAA
GAATGTAGCTGACTTCACGTTTGTGGGTAACGTTGCTCATGCCCACTTGC
TGGCCGCGGAGAAGCTAGGGGTGGTGAAAGGCGTAGACGGGCAGGCATTT
TTTATCACAAATGATGCGCCTTTGCCTTTTTGGGATTTTCTGGCAAAGGT
ATTGACGGGTTTTGGGTATGCAGCGCCGAGTGTGCGACTGCCAGCGGGGG
CCATGGCGGTGATAGGAGGGGGGATGGACGGCTTGGCCGCGATTTTGAGG
AAGATTGGCGTGGTGTTTCAACCGACATTCACACGGTCTAGGGTGCAGTA
CCTGACAACACACCATTATTATAGCATTGAGAAGGCGAAGCGTCTGTTGG
GGTACGAGCCGGCCTGGACGCAAGAAGAGGCTTTGGCGTTGTGTTTCCAG
GAGATGATGCCCGAGCTTGTGAACTCACGCGCGCCAAAGCCTCGACGGGC
AACAGTGAAGAAATGGGAGGTCATCCCGAGATTTACGATGGAACAGGTTG
CGAGGCATAAGAAGAGAGAGGATGCGTGGATCGTCGTTGATGGGAAGGTT
TATGACGTGACTGAGTACGTGGATGTCCACCCGGGGGACGACGCGATATT
GAATTTCGTTGGCCAAGATTCTAGTAAGGGCTTCCACGGGCCGCAGCACC
CTGTAAGTGTGTGGGATGTGATTGCCGAGTATGAGATTGGGGCGCTGGCA
TAGATGCCCGTCAGCTACGCGATGCTTCCCTTATTTGACGCCGAGTCTTT
CTCGACTTCGGCCGTGATGGTCGTCATGGTAGTCGTACTGCTCGCCCTGT
TGATGGTTGTTAAGCCCTCCTCCTCCTCCTGCTCAATCAAGCTCGACCCC
AAGGCCCCTGTCCCCATCCTTGTCGAAGTCCCCGACGAGGTTCTGTACCG
CCGCCTCAAGTATAAGCTCCCTAAAAAAGCGATGGTCACTGGCGGGAACG
GTTTTGTGGGCCGGCGCATTGTCTCAATGCTCCTCGAACAAGGCTGCGAA
GTCACCGTCTTTGACATCTCGGGGGGGTTCCAAAACGAACCCCGCGTCAA
GATGGTGGTCGGCAACCTAGTCGATCCAGTCGATGTCGCCAAGGCCGTGG
CAGGCATCGAGGTTGTCTATCATGTGGCAGCTCCCCATGCCTCCCATCCT
CCTGCTGTCCAATATGCGGTCAACGTGACCGGCACCCAAAACCTCCTTCA
AGCTTCCGCCGCCGCTGGGGTCAAACGTTTTGTGTTTACCTCTTCTGCCA
GTGTCGTCTACGAGGGAAGAGATCAAGCAGGCGCGGATGAAGCTACACCT
ATCCCTACCGCTAGTCTTGACTCTTACACCAAAACAAAAGCCGAAGCAGA
GGCGTTGGTCCTAGCAGCAAACGGACAAGAAGGCATGCTAACCGCCGCCA
TTCGCCCCCATGGGATCTTCGGACCTGGTGACCGGCAATTTTTTCCCGTC
CTTGTGGAAAGTGCGCGGAAAGGGAAGACTAAGTATGCCTTGGGGGAGGG
GAAGAATGTAGCTGACTTCACGTTTGTGGGTAACGTTGCTCATGCCCACT
TGCTGGCCGCGGAGAAGCTAGGGGTGGTGAAAGGCGTAGACGGGCAGGCA
TTTTTTATCACAAATGATGCGCCTTTGCCTTTTTGGGATTTTCTGGCAAA
GGTATTGACGGGTTTTGGGTATGCAGCGCCGAGTGTGCGACTGCCAGCGG
GGGCCATGGCGGTGATAGGAGGGGGGATGGACGGCTTGGCCGCGATTTTG
AGGAAGATTGGCGTGGTGTTTCAACCGACATTCACACGGTCTAGGGTGCA
GTACCTGACAACACACCATTATTATAGCATTGAGAAGGCGAAGCGTCTGT
TGGGGTACGAGCCGGCCTGGACGCAAGAAGAGGCTTTGGCGTTGTGTTTC
CAGGAGATGATGCCCGAGCTTGTGAACTCACGCGCGCCAAAGCCTCGACG
GGCAACAGTGAAGAAATGGGAGGTCATCCCGAGATTTACGATGGAACAGG
TTGCGAGGCATAAGAAGAGAGAGGATGCGTGGATCGTCGTTGATGGGAAG
GTTTATGACGTGACTGAGTACGTGGATGTCCACCCGGGGGACGACGCGAT
ATTGAATTTCGTTGGCCAAGATTCTAGTAAGGGCTTCCACGGGCCGCAGC
ACCCTGTAAGTGTGTGGGATGTGATTGCCGAGTATGAGATTGGGGCGCTG
GCATAG

Synonyms

Publications