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Properties
| Property Name | Value |
|---|
| TranscriptId | 334421 |
| Track | FilteredModels2 |
| ProteinId | 334335 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:782175..783567 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2618 ID=mRNA_2618|Name=jgi.p|Nanoce1779_2|334335|organism=Nannochloropsis oceanica|type=mRNA|length=1393bp
ACTGGCCCACACTAATATGAATGAAAATCAGGTTGCCAATGAGCATTATA
AGTGTACTTTTGATTGATTGATTGATTGATTGATTGATTGTAAGTGTGTG
ACAAGCCTTTGTCAACCTCCCCGCCCATACCATATCCACAGCCGACCACA
CAAAACCACTCGGCAAGATCAAGCTTCCCCTTTCCCACATGGTGCTCTAC
GTGGTGGGTCTAGGCCTGGGGGACGAGGATGATATCACGGTGCGTGGGCT
CAAGGCTGTCCAACGGAGCGAGGTAGTCTTTCTGGAGGCCTACACTTCCG
TACTTGGCGCTCCCAAGGAGCGCTTGGAAACTGCCTTCGGAAAGAGCATC
GTTGTGGCGGACCGTGCCATGGTAGAGAGCGAAGCAGAGCGCATTTATCT
GCCGGCCAAGGACACGGATGTGTGCTTCTTGGTCGTAGGCGACCCGCTCT
GCGCCACCACTCACACGGACATAATCCTACGTGCAAAAGAGGCCGGCATT
CCCGTAGAAGTCGTACACAACGCCTCGGTCATGGGAGCTGTCGCCTCATG
CGGTTTGCAACTCTACAGCTTTGGATACACGGTCTCGATCCCCTTGTTTG
AGGGGGAATGGCGGCCCGACTCGTTTTATTCGAAAATTGCCTACAACCGA
GCTGGAGGCATGCACACCTTGTGCCTCCTCGACATCAAAATGAAGGAGCC
CGACTACGAACAAATGATGCGTGGGCGTGTCCAATATCTCCCACCACGGT
TCATGACGGTTAACGTAGCGATTGAGCAGCTGCTGGCAGTGGAGGTCACG
AAGGACGAAGGGGTGCTGTTACTGGAGACGCCTGCAGTTGGATTAGCGCG
ATTGGGGCAGCCGACGCAGCAGATCGTGGCAGGAACATTGGGCGAACTGT
TGGAGGTGGATTTTGGGAGGCCATTACATTCGTTGGTGATCTGTGGCGAG
CAGCATCCCTGTGAAGTTGAGCTGTTGCAATTTTTCCATGTCACCAGAGG
TGAGTGAGAGGGCATGGTGAAAGCTTTACTTCTGTCGTCCTGGGTCATTC
TTCTGAATCTTCGAGTCAAACATAATTAATGCTTTTGGCCTCTTTGCATC
GATGTAACTCTCTGATGTCACATGTATTGATCATGCTCTCTTACCTTCTT
CTCCTCCCCTTTTTCCCTCCTACCTACCCTCCCTCCCTAGGCGGGTGGAA
CAAGTACGTCAAACCAGTTGAGGACGCCAGCAGCAGCAGTGATGAAGAAG
ACGAGACACAGCAGCAAGATGATGAGTAGCGAAATGGGGCAGTAGAGCGG
CTCGGTCAGTAGTAATTTTAAATCAGAATATAAATAGAGTTGGAAAGAGT
GAGATGACAAGAAGTAAACGAAAGCATCCCCGCAGCTGAAGCA back to topprotein sequence of jgi.p|Nanoce1779_2|334335 >mRNA_2618-protein ID=mRNA_2618-protein|Name=jgi.p|Nanoce1779_2|334335|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MVLYVVGLGLGDEDDITVRGLKAVQRSEVVFLEAYTSVLGAPKERLETAF
GKSIVVADRAMVESEAERIYLPAKDTDVCFLVVGDPLCATTHTDIILRAK
EAGIPVEVVHNASVMGAVASCGLQLYSFGYTVSIPLFEGEWRPDSFYSKI
AYNRAGGMHTLCLLDIKMKEPDYEQMMRGRVQYLPPRFMTVNVAIEQLLA
VEVTKDEGVLLLETPAVGLARLGQPTQQIVAGTLGELLEVDFGRPLHSLV
ICGEQHPCEVELLQFFHVTRGE* back to topmRNA from alignment at scaffold_5:782175..783567- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2618 ID=mRNA_2618|Name=jgi.p|Nanoce1779_2|334335|organism=Nannochloropsis oceanica|type=mRNA|length=1393bp|location=Sequence derived from alignment at scaffold_5:782175..783567- (Nannochloropsis oceanica)
ACTGGCCCACACTAATATGAATGAAAATCAGGTTGCCAATGAGCATTATA
AGTGTACTTTTGATTGATTGATTGATTGATTGATTGATTGTAAGTGTGTG
ACAAGCCTTTGTCAACCTCCCCGCCCATACCATATCCACAGCCGACCACA
CAAAACCACTCGGCAAGATCAAGCTTCCCCTTTCCCACATGGTGCTCTAC
GTGGTGGGTCTAGGCCTGGGGGACGAGGATGATATCACGGTGCGTGGGCT
CAAGGCTGTCCAACGGAGCGAGGTAGTCTTTCTGGAGGCCTACACTTCCG
TACTTGGCGCTCCCAAGGAGCGCTTGGAAACTGCCTTCGGAAAGAGCATC
GTTGTGGCGGACCGTGCCATGGTAGAGAGCGAAGCAGAGCGCATTTATCT
GCCGGCCAAGGACACGGATGTGTGCTTCTTGGTCGTAGGCGACCCGCTCT
GCGCCACCACTCACACGGACATAATCCTACGTGCAAAAGAGGCCGGCATT
CCCGTAGAAGTCGTACACAACGCCTCGGTCATGGGAGCTGTCGCCTCATG
CGGTTTGCAACTCTACAGCTTTGGATACACGGTCTCGATCCCCTTGTTTG
AGGGGGAATGGCGGCCCGACTCGTTTTATTCGAAAATTGCCTACAACCGA
GCTGGAGGCATGCACACCTTGTGCCTCCTCGACATCAAAATGAAGGAGCC
CGACTACGAACAAATGATGCGTGGGCGTGTCCAATATCTCCCACCACGGT
TCATGACGGTTAACGTAGCGATTGAGCAGCTGCTGGCAGTGGAGGTCACG
AAGGACGAAGGGGTGCTGTTACTGGAGACGCCTGCAGTTGGATTAGCGCG
ATTGGGGCAGCCGACGCAGCAGATCGTGGCAGGAACATTGGGCGAACTGT
TGGAGGTGGATTTTGGGAGGCCATTACATTCGTTGGTGATCTGTGGCGAG
CAGCATCCCTGTGAAGTTGAGCTGTTGCAATTTTTCCATGTCACCAGAGG
TGAGTGAGAGGGCATGGTGAAAGCTTTACTTCTGTCGTCCTGGGTCATTC
TTCTGAATCTTCGAGTCAAACATAATTAATGCTTTTGGCCTCTTTGCATC
GATGTAACTCTCTGATGTCACATGTATTGATCATGCTCTCTTACCTTCTT
CTCCTCCCCTTTTTCCCTCCTACCTACCCTCCCTCCCTAGGCGGGTGGAA
CAAGTACGTCAAACCAGTTGAGGACGCCAGCAGCAGCAGTGATGAAGAAG
ACGAGACACAGCAGCAAGATGATGAGTAGCGAAATGGGGCAGTAGAGCGG
CTCGGTCAGTAGTAATTTTAAATCAGAATATAAATAGAGTTGGAAAGAGT
GAGATGACAAGAAGTAAACGAAAGCATCCCCGCAGCTGAAGCA back to topCoding sequence (CDS) from alignment at scaffold_5:782175..783567- >mRNA_2618 ID=mRNA_2618|Name=jgi.p|Nanoce1779_2|334335|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_5:782175..783567- (Nannochloropsis oceanica)
ATGGTGCTCTACGTGGTGGGTCTAGGCCTGGGGGACGAGGATGATATCAC
GGTGCGTGGGCTCAAGGCTGTCCAACGGAGCGAGGTAGTCTTTCTGGAGG
CCTACACTTCCGTACTTGGCGCTCCCAAGGAGCGCTTGGAAACTGCCTTC
GGAAAGAGCATCGTTGTGGCGGACCGTGCCATGGTAGAGAGCGAAGCAGA
GCGCATTTATCTGCCGGCCAAGGACACGGATGTGTGCTTCTTGGTCGTAG
GCGACCCGCTCTGCGCCACCACTCACACGGACATAATCCTACGTGCAAAA
GAGGCCGGCATTCCCGTAGAAGTCGTACACAACGCCTCGGTCATGGGAGC
TGTCGCCTCATGCGGTTTGCAACTCTACAGCTTTGGATACACGGTCTCGA
TCCCCTTGTTTGAGGGGGAATGGCGGCCCGACTCGTTTTATTCGAAAATT
GCCTACAACCGAGCTGGAGGCATGCACACCTTGTGCCTCCTCGACATCAA
AATGAAGGAGCCCGACTACGAACAAATGATGCGTGGGCGTGTCCAATATC
TCCCACCACGGTTCATGACGGTTAACGTAGCGATTGAGCAGCTGCTGGCA
GTGGAGGTCACGAAGGACGAAGGGGTGCTGTTACTGGAGACGCCTGCAGT
TGGATTAGCGCGATTGGGGCAGCCGACGCAGCAGATCGTGGCAGGAACAT
TGGGCGAACTGTTGGAGGTGGATTTTGGGAGGCCATTACATTCGTTGGTG
ATCTGTGGCGAGCAGCATCCCTGTGAAGTTGAGCTGTTGCAATTTTTCCA
TGTCACCAGAGGTGAGTGA back to top
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