jgi.p|Nanoce1779_2|564130, mRNA_2614 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564130
Unique NamemRNA_2614
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length303
Alignment locationscaffold_5:773627..774015 -

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Properties
Property NameValue
TranscriptId564216
TrackFilteredModels2
ProteinId564130
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:773627..774015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564130gene_2614Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564130mRNA_2614-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2614CDS_2614Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2614 ID=mRNA_2614|Name=jgi.p|Nanoce1779_2|564130|organism=Nannochloropsis oceanica|type=mRNA|length=303bp
ATGGCACCCGTCGAACGAGGCGCAGAAGAGACCAAGGCCGAGCAGCACAT
GGCTTACAATGTCCACCCTTTTGAAGTGGAGGAGGGCACTTCGGAGGTCT
TCAAAGCCGAGAAACAACCGAGGAAGCGTAATAGGAAGTTTGCATGTTGT
GCAATTTGCGTGTCCTCGTTCTTAATTCTCGGCATCCTGGCCGCTATCTT
CTACCCCAGGGTACCGCGTGTATCACTGTATAGCTCAAGCCTTCTGGAGA
TCGATGGTTTTACTGATTATAAGGCACAAAACACTCTACCTGCCGCAGGA
TAA
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protein sequence of jgi.p|Nanoce1779_2|564130

>mRNA_2614-protein ID=mRNA_2614-protein|Name=jgi.p|Nanoce1779_2|564130|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MAPVERGAEETKAEQHMAYNVHPFEVEEGTSEVFKAEKQPRKRNRKFACC
AICVSSFLILGILAAIFYPRVPRVSLYSSSLLEIDGFTDYKAQNTLPAAG
*
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mRNA from alignment at scaffold_5:773627..774015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2614 ID=mRNA_2614|Name=jgi.p|Nanoce1779_2|564130|organism=Nannochloropsis oceanica|type=mRNA|length=389bp|location=Sequence derived from alignment at scaffold_5:773627..774015- (Nannochloropsis oceanica)
ATGGCACCCGTCGAACGAGGCGCAGAAGAGACCAAGGCCGAGCAGCACAT
GGCTTACAATGTCCACCCTTTTGAAGTGGAGGAGGGCACTTCGGAGGTCT
TCAAAGCCGAGAAACAACCGAGGAAGCGTAATAGGAAGTTTGCATGTTGT
GCAATTTGCGTGTCCTCGTTCTTAATTCTCGGCATCCTGGCCGCTATCTT
CTACCCCAGGGTACCGCGTGTATCACTGTATAGCTCAAGCCTTCTGGAGA
TCGATGGTTTTACTGGTAAGCGGGCAGGGGATGCAGAAGTTGTCGCCCCG
GCTTTGGAGTTGGACCATCTTAGCACCTTTTCTTTTTCTTGTGCTCCTTA
GATTATAAGGCACAAAACACTCTACCTGCCGCAGGATAA
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Coding sequence (CDS) from alignment at scaffold_5:773627..774015-

>mRNA_2614 ID=mRNA_2614|Name=jgi.p|Nanoce1779_2|564130|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_5:773627..774015- (Nannochloropsis oceanica)
ATTATAAGGCACAAAACACTCTACCTGCCGCAGGATAAATGGCACCCGTC
GAACGAGGCGCAGAAGAGACCAAGGCCGAGCAGCACATGGCTTACAATGT
CCACCCTTTTGAAGTGGAGGAGGGCACTTCGGAGGTCTTCAAAGCCGAGA
AACAACCGAGGAAGCGTAATAGGAAGTTTGCATGTTGTGCAATTTGCGTG
TCCTCGTTCTTAATTCTCGGCATCCTGGCCGCTATCTTCTACCCCAGGGT
ACCGCGTGTATCACTGTATAGCTCAAGCCTTCTGGAGATCGATGGTTTTA
CTGATTATAAGGCACAAAACACTCTACCTGCCGCAGGATAAATGGCACCC
GTCGAACGAGGCGCAGAAGAGACCAAGGCCGAGCAGCACATGGCTTACAA
TGTCCACCCTTTTGAAGTGGAGGAGGGCACTTCGGAGGTCTTCAAAGCCG
AGAAACAACCGAGGAAGCGTAATAGGAAGTTTGCATGTTGTGCAATTTGC
GTGTCCTCGTTCTTAATTCTCGGCATCCTGGCCGCTATCTTCTACCCCAG
GGTACCGCGTGTATCACTGTATAGCTCAAGCCTTCTGGAGATCGATGGTT
TTACTG
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Synonyms
Publications