jgi.p|Nanoce1779_2|580928, mRNA_2612 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580928
Unique NamemRNA_2612
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1554
Alignment locationscaffold_5:766212..767765 -

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Properties
Property NameValue
TranscriptId581014
TrackFilteredModels2
ProteinId580928
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:766212..767765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580928gene_2612Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580928mRNA_2612-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2612CDS_2612Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2612 ID=mRNA_2612|Name=jgi.p|Nanoce1779_2|580928|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp
CAGGCCAATAATCTGTCGTACTGTTACCGGTCCCGACTTCGTGACATCAT
GTGGTTGCCGGGTCTATCATCATCCTTGCTTCTCCTCTTCGGTGAGACCG
CCGCCTGTCTCCCCCATTCCTCCATTCAACCACTATTCCCCGTCCTCCCT
GTGGCCCGGTCTAAGCACTCCCCTCGTCACTCCATTGCGCATATCTCCTC
CCACCCTAATATGCCGGGTGCCTTTGTGGGGGGCATCATCCAAGGCATCG
GCAACACTGCCAAACGCGTGAAAGAGGGCACACAAGAGCTCTGGCACAAC
ACCAAGCAACTCGGCGCTCTCAAGAAACGCCATTCCCAAGGCGAAAGCTT
GAGCTTCGAGGAGTACAACTTAATGCAGAAAACGTCTGGGGATATAGCGA
AATTCGTTGGCCTGGCCCTCTTTACTATGAGCAAGCCAGAGTTCACCCCT
TTCCTCTGCTCCTTCTTCCCGGCCGTCGTGCCCTCAACCTACCTGAGCTC
GGACGAGAAGCTGCAGCGGTGCCAACAACGGAATTTTGGGCGAGTTCGTG
CGGTGGTAAATCACTTGATGAGCCTGCAGCAAGAGACGGTTGCTCCGCAT
AAGAAAGAAAATGATCGGATGCGACATTTACGTGCTATGGAAAATTTACT
TCGTACCACAAGCAAGGGCGGTGCCGTCCAGGCTTTGAAGCAGGTGGGGT
CCACAGAAGGCGTTTTATTCACCAGCCGTACCACGGATAGGAAGGGCCGG
CCCAAGGCGGACTTAAGGGGGGTGCCGCGTCCGTTTTTGGTGAGTGTGTG
TAACGCTATTGGGATGTTCAATAAATTTATCCCGGCGGCGGCCTTGAGAG
TGATGTTGAGTGATTACCTCTTTAAAATAAACGAGAGTGACCAAATTCTG
TTGCTTCAAACGAATGTGGATAAGTTAGGGCGGGATGATTTATTAGATGC
CTGTTCTCAGCGTGCCTTGTCCCTAGGCGATGCCACCTCTGCGGCCATGC
GCAGACACTTAAAGTCGTACTTGAAAACGATTGATCGCCCGGGACTAGTA
GCACCAAAACAAGCGAAGAGCGAGGAGGAATGGGATTCGGTGGAGCTGAA
TGAGAATAACCTGAGGTTTGCACTATTGGGACTGAACATGGTGGGGTTGG
TGAGGGAAGCGAGGGAGAATAGCGCGTTGCGGGCGCTGTTTGGGAGTGCC
TGAAAACATGCTCGAGGAGCAACAGCAGTCACAGCAGTTGCAACAACAAC
CAGAGCGGGAGAAGGGGGAGGATTATGATGACATTCTGCTACTGGAGGGT
GCGAGGAAGAAACTTTGTCGATGGCGCTGATTGGATGCGCGTGAGCAGGA
TCAGAAAAATCAGGAGCAGATGATGATGATGGTAGAGGATGTTAAGAGAA
ATAAAATTCGCACGAACACTGATCAGAAGGACGAGGTGATGATGATGACG
ATGAAGAAGAAGAAGGAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAC
GAAGAAGAAGACGATGAAGAATATGTAACAACTATCTACAATACACAGTG
CATA
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protein sequence of jgi.p|Nanoce1779_2|580928

>mRNA_2612-protein ID=mRNA_2612-protein|Name=jgi.p|Nanoce1779_2|580928|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MWLPGLSSSLLLLFGETAACLPHSSIQPLFPVLPVARSKHSPRHSIAHIS
SHPNMPGAFVGGIIQGIGNTAKRVKEGTQELWHNTKQLGALKKRHSQGES
LSFEEYNLMQKTSGDIAKFVGLALFTMSKPEFTPFLCSFFPAVVPSTYLS
SDEKLQRCQQRNFGRVRAVVNHLMSLQQETVAPHKKENDRMRHLRAMENL
LRTTSKGGAVQALKQVGSTEGVLFTSRTTDRKGRPKADLRGVPRPFLVSV
CNAIGMFNKFIPAAALRVMLSDYLFKINESDQILLLQTNVDKLGRDDLLD
ACSQRALSLGDATSAAMRRHLKSYLKTIDRPGLVAPKQAKSEEEWDSVEL
NENNLRFALLGLNMVGLVREARENSALRALFGSA*
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mRNA from alignment at scaffold_5:766212..767765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2612 ID=mRNA_2612|Name=jgi.p|Nanoce1779_2|580928|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp|location=Sequence derived from alignment at scaffold_5:766212..767765- (Nannochloropsis oceanica)
CAGGCCAATAATCTGTCGTACTGTTACCGGTCCCGACTTCGTGACATCAT
GTGGTTGCCGGGTCTATCATCATCCTTGCTTCTCCTCTTCGGTGAGACCG
CCGCCTGTCTCCCCCATTCCTCCATTCAACCACTATTCCCCGTCCTCCCT
GTGGCCCGGTCTAAGCACTCCCCTCGTCACTCCATTGCGCATATCTCCTC
CCACCCTAATATGCCGGGTGCCTTTGTGGGGGGCATCATCCAAGGCATCG
GCAACACTGCCAAACGCGTGAAAGAGGGCACACAAGAGCTCTGGCACAAC
ACCAAGCAACTCGGCGCTCTCAAGAAACGCCATTCCCAAGGCGAAAGCTT
GAGCTTCGAGGAGTACAACTTAATGCAGAAAACGTCTGGGGATATAGCGA
AATTCGTTGGCCTGGCCCTCTTTACTATGAGCAAGCCAGAGTTCACCCCT
TTCCTCTGCTCCTTCTTCCCGGCCGTCGTGCCCTCAACCTACCTGAGCTC
GGACGAGAAGCTGCAGCGGTGCCAACAACGGAATTTTGGGCGAGTTCGTG
CGGTGGTAAATCACTTGATGAGCCTGCAGCAAGAGACGGTTGCTCCGCAT
AAGAAAGAAAATGATCGGATGCGACATTTACGTGCTATGGAAAATTTACT
TCGTACCACAAGCAAGGGCGGTGCCGTCCAGGCTTTGAAGCAGGTGGGGT
CCACAGAAGGCGTTTTATTCACCAGCCGTACCACGGATAGGAAGGGCCGG
CCCAAGGCGGACTTAAGGGGGGTGCCGCGTCCGTTTTTGGTGAGTGTGTG
TAACGCTATTGGGATGTTCAATAAATTTATCCCGGCGGCGGCCTTGAGAG
TGATGTTGAGTGATTACCTCTTTAAAATAAACGAGAGTGACCAAATTCTG
TTGCTTCAAACGAATGTGGATAAGTTAGGGCGGGATGATTTATTAGATGC
CTGTTCTCAGCGTGCCTTGTCCCTAGGCGATGCCACCTCTGCGGCCATGC
GCAGACACTTAAAGTCGTACTTGAAAACGATTGATCGCCCGGGACTAGTA
GCACCAAAACAAGCGAAGAGCGAGGAGGAATGGGATTCGGTGGAGCTGAA
TGAGAATAACCTGAGGTTTGCACTATTGGGACTGAACATGGTGGGGTTGG
TGAGGGAAGCGAGGGAGAATAGCGCGTTGCGGGCGCTGTTTGGGAGTGCC
TGAAAACATGCTCGAGGAGCAACAGCAGTCACAGCAGTTGCAACAACAAC
CAGAGCGGGAGAAGGGGGAGGATTATGATGACATTCTGCTACTGGAGGGT
GCGAGGAAGAAACTTTGTCGATGGCGCTGATTGGATGCGCGTGAGCAGGA
TCAGAAAAATCAGGAGCAGATGATGATGATGGTAGAGGATGTTAAGAGAA
ATAAAATTCGCACGAACACTGATCAGAAGGACGAGGTGATGATGATGACG
ATGAAGAAGAAGAAGGAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAC
GAAGAAGAAGACGATGAAGAATATGTAACAACTATCTACAATACACAGTG
CATA
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Coding sequence (CDS) from alignment at scaffold_5:766212..767765-

>mRNA_2612 ID=mRNA_2612|Name=jgi.p|Nanoce1779_2|580928|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at scaffold_5:766212..767765- (Nannochloropsis oceanica)
ATGTGGTTGCCGGGTCTATCATCATCCTTGCTTCTCCTCTTCGGTGAGAC
CGCCGCCTGTCTCCCCCATTCCTCCATTCAACCACTATTCCCCGTCCTCC
CTGTGGCCCGGTCTAAGCACTCCCCTCGTCACTCCATTGCGCATATCTCC
TCCCACCCTAATATGCCGGGTGCCTTTGTGGGGGGCATCATCCAAGGCAT
CGGCAACACTGCCAAACGCGTGAAAGAGGGCACACAAGAGCTCTGGCACA
ACACCAAGCAACTCGGCGCTCTCAAGAAACGCCATTCCCAAGGCGAAAGC
TTGAGCTTCGAGGAGTACAACTTAATGCAGAAAACGTCTGGGGATATAGC
GAAATTCGTTGGCCTGGCCCTCTTTACTATGAGCAAGCCAGAGTTCACCC
CTTTCCTCTGCTCCTTCTTCCCGGCCGTCGTGCCCTCAACCTACCTGAGC
TCGGACGAGAAGCTGCAGCGGTGCCAACAACGGAATTTTGGGCGAGTTCG
TGCGGTGGTAAATCACTTGATGAGCCTGCAGCAAGAGACGGTTGCTCCGC
ATAAGAAAGAAAATGATCGGATGCGACATTTACGTGCTATGGAAAATTTA
CTTCGTACCACAAGCAAGGGCGGTGCCGTCCAGGCTTTGAAGCAGGTGGG
GTCCACAGAAGGCGTTTTATTCACCAGCCGTACCACGGATAGGAAGGGCC
GGCCCAAGGCGGACTTAAGGGGGGTGCCGCGTCCGTTTTTGGTGAGTGTG
TGTAACGCTATTGGGATGTTCAATAAATTTATCCCGGCGGCGGCCTTGAG
AGTGATGTTGAGTGATTACCTCTTTAAAATAAACGAGAGTGACCAAATTC
TGTTGCTTCAAACGAATGTGGATAAGTTAGGGCGGGATGATTTATTAGAT
GCCTGTTCTCAGCGTGCCTTGTCCCTAGGCGATGCCACCTCTGCGGCCAT
GCGCAGACACTTAAAGTCGTACTTGAAAACGATTGATCGCCCGGGACTAG
TAGCACCAAAACAAGCGAAGAGCGAGGAGGAATGGGATTCGGTGGAGCTG
AATGAGAATAACCTGAGGTTTGCACTATTGGGACTGAACATGGTGGGGTT
GGTGAGGGAAGCGAGGGAGAATAGCGCGTTGCGGGCGCTGTTTGGGAGTG
CCTGA
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Synonyms
Publications