jgi.p|Nanoce1779_2|525422, mRNA_2611 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525422
Unique NamemRNA_2611
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length855
Alignment locationscaffold_5:764979..766012 +

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Properties
Property NameValue
TranscriptId525508
TrackFilteredModels2
ProteinId525422
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:764979..766012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525422gene_2611Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525422mRNA_2611-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2611CDS_2611Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2611 ID=mRNA_2611|Name=jgi.p|Nanoce1779_2|525422|organism=Nannochloropsis oceanica|type=mRNA|length=855bp
ATGTCGTCCCCGCCGCCGCTGCCCCACAATTCCAATTTTCACCAACAGCC
CAGCGACGCCAACATTGCCCTTTTCGAGGCATGTGCCATAGCCAAGGATG
TAAGCCATGTCGACAAGCTGCTCGCCTCTGGTGCCAGCCCTAATTGGTAT
AATTATCAGGAGGGAGGGCAGACGGCGTTGCATGCCGCTGCGCGTGTTCC
CTCGTCCTCCCCCTCTTCTGCCCATGCCACCGTGATTGTGCAGCGCCTAC
TTGCACACGGTGCCGTGACCAACGTCCTGACCCTGCCAGATTTTAACTTG
CCCTTGCACTTTGCCGCCTCGGCGGGGAACCTGGCGACGGTAAAGCTGCT
TGTTGAGCACGACCAGAAGCACACAACTCCCAAAACCCTTTCCGCGGCCA
GCAATATATTCGGTAATACACCCCTTCATGAGGCGTGCATTTCGGGGCAC
GAAGAGTGCGCAAATTACATCCTATCCCAAGATAGGGCCACCGCCCGGCC
CTCCCTCGTCAACCTTTCCAACAAACGCGGCTCCACTCCACTCCTCTTCT
CGCTTTATGGCTCCCATCCCTCCCTCAAGCTGATTACCCTCCTCCTTGCC
AACGGAGCAGACCTCCGTCACATGGATCAAGATGGAGTAGGTATCTTGCA
TATTGCTGCAATGCAAGGCCATCGGGAGATAGTTGATCACCTTTTGAAAG
AGAAAATGTTGGGGAAAGCAGGTTGGACGAAAGATGCGAATGGACATTCG
CCCATGTTTTATGCCAAAATGAAGGGCTTTGATGAGATTGAAAAGATGTT
GTCGGAGGCTGAGAGAGATGAAGTGAAGGGGGAGAGGGAAAATGTCGGTG
CTTGA
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protein sequence of jgi.p|Nanoce1779_2|525422

>mRNA_2611-protein ID=mRNA_2611-protein|Name=jgi.p|Nanoce1779_2|525422|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MSSPPPLPHNSNFHQQPSDANIALFEACAIAKDVSHVDKLLASGASPNWY
NYQEGGQTALHAAARVPSSSPSSAHATVIVQRLLAHGAVTNVLTLPDFNL
PLHFAASAGNLATVKLLVEHDQKHTTPKTLSAASNIFGNTPLHEACISGH
EECANYILSQDRATARPSLVNLSNKRGSTPLLFSLYGSHPSLKLITLLLA
NGADLRHMDQDGVGILHIAAMQGHREIVDHLLKEKMLGKAGWTKDANGHS
PMFYAKMKGFDEIEKMLSEAERDEVKGERENVGA*
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mRNA from alignment at scaffold_5:764979..766012+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2611 ID=mRNA_2611|Name=jgi.p|Nanoce1779_2|525422|organism=Nannochloropsis oceanica|type=mRNA|length=1034bp|location=Sequence derived from alignment at scaffold_5:764979..766012+ (Nannochloropsis oceanica)
ATGTCGTCCCCGCCGCCGCTGCCCCACAATTCCAATTTTCACCAACAGCC
CAGCGACGCCAACATTGCCCTTTTCGAGGCATGTGCCATAGCCAAGGATG
TAAGCCATGTCGACAAGCTGCTCGCCTCTGGTGCCAGCCCTAATTGGTAT
AATTATCAGGAGGGAGGGCAGACGGCGTTGCATGCCGCTGCGCGTGTTCC
CTCGTCCTCCCCCTCTTCTGCCCATGCCACCGTGATTGTGCAGCGCCTAC
TTGCACACGGTGCCGTGACCAACGTCCTGACCCTGCCAGATTTTAACTTG
CCCTTGCACTTTGCCGCCTCGGCGGGGAACCTGGCGACGGTAAAGCTGCT
TGTTGAGCACGACCAGAAGCACACAACTCCCAAAACCCTTTCCGCGGCCG
TTGCTTCACCATTCGCCTCTCTTATAAAGGCCCCCACCATTGCCACATGT
GGCGTCCGCCAGAGCAATATATTCGGTAATACACCCCTTCATGAGGCGTG
CATTTCGGGGCACGAAGAGGTAGGATCGCTGGGAAAGGAGGTCACATATA
AATGATATTAATCATCTCTTCCACATCACCGCACTCACATTGCTTTTCTT
CTTTCATTTTCTTCTCATTCACATGTGGTCCAAAGTGCGCAAATTACATC
CTATCCCAAGATAGGGCCACCGCCCGGCCCTCCCTCGTCAACCTTTCCAA
CAAACGCGGCTCCACTCCACTCCTCTTCTCGCTTTATGGCTCCCATCCCT
CCCTCAAGCTGATTACCCTCCTCCTTGCCAACGGAGCAGACCTCCGTCAC
ATGGATCAAGATGGAGTAGGTATCTTGCATATTGCTGCAATGCAAGGCCA
TCGGGAGATAGTTGATCACCTTTTGAAAGAGAAAATGTTGGGGAAAGCAG
GTTGGACGAAAGATGCGAATGGACATTCGCCCATGTTTTATGCCAAAATG
AAGGGCTTTGATGAGATTGAAAAGATGTTGTCGGAGGCTGAGAGAGATGA
AGTGAAGGGGGAGAGGGAAAATGTCGGTGCTTGA
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Coding sequence (CDS) from alignment at scaffold_5:764979..766012+

>mRNA_2611 ID=mRNA_2611|Name=jgi.p|Nanoce1779_2|525422|organism=Nannochloropsis oceanica|type=CDS|length=2565bp|location=Sequence derived from alignment at scaffold_5:764979..766012+ (Nannochloropsis oceanica)
ATGTCGTCCCCGCCGCCGCTGCCCCACAATTCCAATTTTCACCAACAGCC
CAGCGACGCCAACATTGCCCTTTTCGAGGCATGTGCCATAGCCAAGGATG
TAAGCCATGTCGACAAGCTGCTCGCCTCTGGTGCCAGCCCTAATTGGTAT
AATTATCAGGAGGGAGGGCAGACGGCGTTGCATGCCGCTGCGCGTGTTCC
CTCGTCCTCCCCCTCTTCTGCCCATGCCACCGTGATTGTGCAGCGCCTAC
TTGCACACGGTGCCGTGACCAACGTCCTGACCCTGCCAGATTTTAACTTG
CCCTTGCACTTTGCCGCCTCGGCGGGGAACCTGGCGACGGTAAAGCTGCT
TGTTGAGCACGACCAGAAGCACACAACTCCCAAAACCCTTTCCGCGGCCA
GCAATATATTCGGTAATACACCCCTTCATGAGGCGTGCATTTCGGGGCAC
GAAGAGTGCGCAAATTACATCCTATCCCAAGATAGGGCCACCGCCCGGCC
CTCCCTCGTCAACCTTTCCAACAAACGCGGCTCCACTCCACTCCTCTTCT
CGCTTTATGGCTCCCATCCCTCCCTCAAGCTGATTACCCTCCTCCTTGCC
AACGGAGCAGACCTCCGTCACATGGATCAAGATGGAGTAGGTATCTTGCA
TATTGCTGCAATGCAAGGCCATCGGGAGATAGTTGATCACCTTTTGAAAG
AGAAAATGTTGGGGAAAGCAGGTTGGACGAAAGATGCGAATGGACATTCG
CCCATGTTTTATGCCAAAATGAAGGGCTTTGATGAGATTGAAAAGATGTT
GTCGGAGGCTGAGAGAGATGAAGTGAAGGGGGAGAGGGAAAATGTCGGTG
CTTGAATGTCGTCCCCGCCGCCGCTGCCCCACAATTCCAATTTTCACCAA
CAGCCCAGCGACGCCAACATTGCCCTTTTCGAGGCATGTGCCATAGCCAA
GGATGTAAGCCATGTCGACAAGCTGCTCGCCTCTGGTGCCAGCCCTAATT
GGTATAATTATCAGGAGGGAGGGCAGACGGCGTTGCATGCCGCTGCGCGT
GTTCCCTCGTCCTCCCCCTCTTCTGCCCATGCCACCGTGATTGTGCAGCG
CCTACTTGCACACGGTGCCGTGACCAACGTCCTGACCCTGCCAGATTTTA
ACTTGCCCTTGCACTTTGCCGCCTCGGCGGGGAACCTGGCGACGGTAAAG
CTGCTTGTTGAGCACGACCAGAAGCACACAACTCCCAAAACCCTTTCCGC
GGCCAGCAATATATTCGGTAATACACCCCTTCATGAGGCGTGCATTTCGG
GGCACGAAGAGTGCGCAAATTACATCCTATCCCAAGATAGGGCCACCGCC
CGGCCCTCCCTCGTCAACCTTTCCAACAAACGCGGCTCCACTCCACTCCT
CTTCTCGCTTTATGGCTCCCATCCCTCCCTCAAGCTGATTACCCTCCTCC
TTGCCAACGGAGCAGACCTCCGTCACATGGATCAAGATGGAGTAGGTATC
TTGCATATTGCTGCAATGCAAGGCCATCGGGAGATAGTTGATCACCTTTT
GAAAGAGAAAATGTTGGGGAAAGCAGGTTGGACGAAAGATGCGAATGGAC
ATTCGCCCATGTTTTATGCCAAAATGAAGGGCTTTGATGAGATTGAAAAG
ATGTTGTCGGAGGCTGAGAGAGATGAAGTGAAGGGGGAGAGGGAAAATGT
CGGTGCTTGAATGTCGTCCCCGCCGCCGCTGCCCCACAATTCCAATTTTC
ACCAACAGCCCAGCGACGCCAACATTGCCCTTTTCGAGGCATGTGCCATA
GCCAAGGATGTAAGCCATGTCGACAAGCTGCTCGCCTCTGGTGCCAGCCC
TAATTGGTATAATTATCAGGAGGGAGGGCAGACGGCGTTGCATGCCGCTG
CGCGTGTTCCCTCGTCCTCCCCCTCTTCTGCCCATGCCACCGTGATTGTG
CAGCGCCTACTTGCACACGGTGCCGTGACCAACGTCCTGACCCTGCCAGA
TTTTAACTTGCCCTTGCACTTTGCCGCCTCGGCGGGGAACCTGGCGACGG
TAAAGCTGCTTGTTGAGCACGACCAGAAGCACACAACTCCCAAAACCCTT
TCCGCGGCCAGCAATATATTCGGTAATACACCCCTTCATGAGGCGTGCAT
TTCGGGGCACGAAGAGTGCGCAAATTACATCCTATCCCAAGATAGGGCCA
CCGCCCGGCCCTCCCTCGTCAACCTTTCCAACAAACGCGGCTCCACTCCA
CTCCTCTTCTCGCTTTATGGCTCCCATCCCTCCCTCAAGCTGATTACCCT
CCTCCTTGCCAACGGAGCAGACCTCCGTCACATGGATCAAGATGGAGTAG
GTATCTTGCATATTGCTGCAATGCAAGGCCATCGGGAGATAGTTGATCAC
CTTTTGAAAGAGAAAATGTTGGGGAAAGCAGGTTGGACGAAAGATGCGAA
TGGACATTCGCCCATGTTTTATGCCAAAATGAAGGGCTTTGATGAGATTG
AAAAGATGTTGTCGGAGGCTGAGAGAGATGAAGTGAAGGGGGAGAGGGAA
AATGTCGGTGCTTGA
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Synonyms
Publications