jgi.p|Nanoce1779_2|580927, mRNA_2610 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580927
Unique NamemRNA_2610
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length554
Alignment locationscaffold_5:763768..764551 -

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Properties
Property NameValue
TranscriptId581013
TrackFilteredModels2
ProteinId580927
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:763768..764551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580927gene_2610Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580927mRNA_2610-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2610CDS_2610Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2610 ID=mRNA_2610|Name=jgi.p|Nanoce1779_2|580927|organism=Nannochloropsis oceanica|type=mRNA|length=554bp
ACAGGTGCACACGCCCAGCGTGAAATAGAGCAAGCACCCTTCTACCGTTA
TCGAGGCCGTCATCGTTCTTCGCCCCGGTGCTGGTGCTGTGTGACAAAAC
TTGCATACTTCTGCCTCCGCGTCCCGCCGGGTGATTTAATTTATCATGTC
CGCAATCTTCGATTTCTCTAGCCTCATTACCGTCATTCTTCTCTTCATCG
TCACTTGTACCTATCTTCGTGGGTTTCGCGCCACGATTTTCGACAATAAA
CCCTCGGCCGACGGGGCCATTAATCGGCATGAGGGCTTGCTCGGGTTTTG
TTGGAAAGCGTCTCGGATTGGGGAACGGAAGAGTGAGTGGGTAGGTATGG
CATGTGTGATCATGGCAGTGCATACCTTATTTTTCAAAAAGCCTTAAGAT
TGAGGATAGATGGAACGAAAGGTGGGAAGAAGGGAATAGCAAAACTCAAC
GGAGAATGACAGAGGCAGAAGGAGAGGGAAATTATGAAGGGAAAATGAAG
TAATGGTGGTAGCGATATCTGTATAAGATGAAAAAAAGACACCGCTACCT
GCTT
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protein sequence of jgi.p|Nanoce1779_2|580927

>mRNA_2610-protein ID=mRNA_2610-protein|Name=jgi.p|Nanoce1779_2|580927|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAINRHEGLLG
FCWKASRIGERKSEWVGMACVIMAVHTLFFKKP*
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mRNA from alignment at scaffold_5:763768..764551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2610 ID=mRNA_2610|Name=jgi.p|Nanoce1779_2|580927|organism=Nannochloropsis oceanica|type=mRNA|length=784bp|location=Sequence derived from alignment at scaffold_5:763768..764551- (Nannochloropsis oceanica)
ACAGGTGCACACGCCCAGCGTGAAATAGAGCAAGCACCCTTCTACCGTTA
TCGAGGCCGTCATCGTTCTTCGCCCCGGTGCTGGTGCTGTGTGACAAAAC
TTGCATACTTCTGCCTCCGCGTCCCGCCGGGTGATTTAATTTATCATGGT
ACGTCTCGCTCTTTCTCTGTGGGTCCAGCAGTTTAGGATCGTCGTTCACC
GCTGGCTGCATGTCTGCTGTAGTCGACGTCTTGCGCAAAAACAGAGGACT
GTCTCTGGCGCCGACGCCCTTGCCACAGACACATGCATCCACACCCAGAC
ACATATGTATCCCTCCCACATCCTCGTAGTCCGCTATCCACACTCTGACA
CACATGTATCCCTCCCAAATCCCCCTAGTCCGCAATCTTCGATTTCTCTA
GCCTCATTACCGTCATTCTTCTCTTCATCGTCACTTGTACCTATCTTCGT
GGGTTTCGCGCCACGATTTTCGACAATAAACCCTCGGCCGACGGGGCCAT
TAATCGGCATGAGGGCTTGCTCGGGTTTTGTTGGAAAGCGTCTCGGATTG
GGGAACGGAAGAGTGAGTGGGTAGGTATGGCATGTGTGATCATGGCAGTG
CATACCTTATTTTTCAAAAAGCCTTAAGATTGAGGATAGATGGAACGAAA
GGTGGGAAGAAGGGAATAGCAAAACTCAACGGAGAATGACAGAGGCAGAA
GGAGAGGGAAATTATGAAGGGAAAATGAAGTAATGGTGGTAGCGATATCT
GTATAAGATGAAAAAAAGACACCGCTACCTGCTT
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Coding sequence (CDS) from alignment at scaffold_5:763768..764551-

>mRNA_2610 ID=mRNA_2610|Name=jgi.p|Nanoce1779_2|580927|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_5:763768..764551- (Nannochloropsis oceanica)
TCCGCAATCTTCGATTTCTCTAGCCTCATTACCGTCATTCTTCTCTTCAT
CGTCACTTGTACCTATCTTCGTGGGTTTCGCGCCACGATTTTCGACAATA
AACCCTCGGCCGACGGGGCCATTAATCGGCATGAGGGCTTGCTCGGGTTT
TGTTGGAAAGCGTCTCGGATTGGGGAACGGAAGAGTGAGTGGGTAGGTAT
GGCATGTGTGATCATGGCAGTGCATACCTTATTTTTCAAAAAGCCTTAAA
TGTCCGCAATCTTCGATTTCTCTAGCCTCATTACCGTCATTCTTCTCTTC
ATCGTCACTTGTACCTATCTTCGTGGGTTTCGCGCCACGATTTTCGACAA
TAAACCCTCGGCCGACGGGGCCATTAATCGGCATGAGGGCTTGCTCGGGT
TTTGTTGGAAAGCGTCTCGGATTGGGGAACGGAAGAGTGAGTGGGTAGGT
ATGGCATGTGTGATCATGGCAGTGCATACCTTATTTTTCAAAAAGCCTTA
AATG
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Synonyms
Publications