jgi.p|Nanoce1779_2|576742, mRNA_261 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576742
Unique Name	mRNA_261
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1992
Alignment location	scaffold_3:650408..652565 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576828
Track	FilteredModels2
ProteinId	576742

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:650408..652565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576742	gene_261	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576742	mRNA_261-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_261	CDS_261	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:650408..652565+
coding sequence from alignment at scaffold_3:650408..652565+

mRNA sequence

>mRNA_261 ID=mRNA_261|Name=jgi.p|Nanoce1779_2|576742|organism=Nannochloropsis oceanica|type=mRNA|length=1992bp
ACAGGTCCAAACTGCCCCCACCTGCATCATGGCAAGGCGGCCCTGGCAGA
GCCTGTCGCTTGGGAGAGACCAACGACTCGGAGCGGGTGAAGAGCAAGAC
TAGCACACGACAGGTGGGCCAAGCAAAGCGATTCTTCCACTGCGTAACAG
CTTGCAGGCGGTGGCTGATCGTTTACGTCTAGCTATCCTCAGATAAGCTC
ACATTCACCAAGGGAGTCTATCACTGCTTCACTGCTGGCGTTGGGAGGAT
TCGAGAGAGGGAGGGCAAGAATCGACGGCATTACTGCATCGCTACATTAC
ATGTAATAGGCATGTCAGTCCTTTCTGTTGAGCTCCTGGTCCCTATTGTC
ATTTGCTTTTTGTTGTTGGTGGCGGCAAATCTTTTGCAACGGCGCATCCG
AGCCGAGTCGCATCCCTGGCATCCATGGCTTCGGTATGTCCGTATCTCCA
AGTACGTCCTGTCCTGGTATATCATCAGCATCAGTTTCACTCTTTGCAAC
AAGTGGGTGCTGCGGTACTGGCATGGGGACGGGTTTCCCTTCCCCATATT
TGTCACGGCCATGCATATGACAATCAAATTTTGCCTGACGCGCGTCATCA
ACCGTTGCTGCATCAGGCCTGAACGCCGCGTTCGCCCCTTGCCCTTGTGG
ACATCCCTGCGAGGCCCAATACCGATCGGGGTGCTTACGGGCGTGGACGT
GGTGTTAAGTAATTTAAGCTTCATGTTTATCAGTGTCACGTTTTACACCA
TCCTCAAGTCCGGTGCCTTGATTTGGATTCTGATCTGGGCCGTGATCATG
CGCCTCGAGCCCTTGACGATGGAGATTGTGGCCATATGCGTCTTGGTCAG
CATGGGCGTGAGCCTGGCTAGCTACGGGGAAGCATCATTTAGCCTCGTGG
GTTTCATACTCGTGACGGCTGCTTGTGCGTCTTCAGGCCTACGCTGGGCA
TTGACACAAGTCATGTTGGAAGGCAAAGGAGGGCTCGGCAGCGACCGACA
GGAGGTCTTGCACAGGTCGACATTGGTCAATCAATTGGGGGAGGGTGAGT
GGGACGTGGACGAGGAGGAGGACGAGTTCCGTGGCAATGATGGCCACAAC
GGGTTGCAAGGCAATGGTGGAGGCAGCAGTCGTGGTGAGGTTCGCGGGAG
GGACCACCAGCCGGAGCAGCATCGTCGTCGACAGAGCACGGCCCACCACC
CCCCTAGTGATCAGGATGGTGGCTCGGCGACAATAGATGCGAGCCTGCTT
CCGCCTATGCCCGCACCCTCGGTTCACCATCCGCGGGCCTTTGAAATTCT
GTACCACGTCTCCCCGGCCAGTGCACTGAGTTGCGTTACTGTCTTCTTGA
TGGTGGAGCTGCAGCCTTGCTTGCGCTCGCCTGTGTTTCATGATGGGGCT
TCGCTTTCTCAGCTGCTAGTCATTCTCATCTTGGGGGGCTTAATCTCGTT
TTTGCTGGTGTTGGCTGAGGTGAAGCTGGTGAAGATTTCGAGCTCGCTGA
CCATGAGCATGTTTGGGGCCGTCAAGGAGATAATCACCGTGGCCCTCTCC
ATGATGGTCTTCCACGATGACGTTTCCCCTCTCAACGTATCCGGTCTCCT
GCTTGCCATTGTTGGTGCGGTCTGGTACCGGCAATACAAGCAAAAACCCG
GCTCCTCCCTCTCCATTTATCTCTCAAGCGCCGGGGAAGCTGGAGGCGAG
GGAAGCAGCAGCGTGGGAGGGATGCGGACACCAACCACCGAATCAGGTAT
CTTCCACCTAAACGAGTTTTCGTCCGACGAGGAGGAGGAAGAAGAAGACG
ATGACCGAGCTGTGGGGAGGGTTCCAGGAGATGAAGAAGCTGTCGAGGTG
GAGATGTACAACATAAGCCGCGCTCAACTTGCTTGAAAGTGAGAAAGTTT
GAAACCGAAAATGCTGCTCCCTTCGATTGTACCGCCACTTTTGTGCATAA
GAAATACATGAATAAAGTGTCAATAATTTTTTTTTTGTGACG

protein sequence of jgi.p|Nanoce1779_2|576742

>mRNA_261-protein ID=mRNA_261-protein|Name=jgi.p|Nanoce1779_2|576742|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MSVLSVELLVPIVICFLLLVAANLLQRRIRAESHPWHPWLRYVRISKYVL
SWYIISISFTLCNKWVLRYWHGDGFPFPIFVTAMHMTIKFCLTRVINRCC
IRPERRVRPLPLWTSLRGPIPIGVLTGVDVVLSNLSFMFISVTFYTILKS
GALIWILIWAVIMRLEPLTMEIVAICVLVSMGVSLASYGEASFSLVGFIL
VTAACASSGLRWALTQVMLEGKGGLGSDRQEVLHRSTLVNQLGEGEWDVD
EEEDEFRGNDGHNGLQGNGGGSSRGEVRGRDHQPEQHRRRQSTAHHPPSD
QDGGSATIDASLLPPMPAPSVHHPRAFEILYHVSPASALSCVTVFLMVEL
QPCLRSPVFHDGASLSQLLVILILGGLISFLLVLAEVKLVKISSSLTMSM
FGAVKEIITVALSMMVFHDDVSPLNVSGLLLAIVGAVWYRQYKQKPGSSL
SIYLSSAGEAGGEGSSSVGGMRTPTTESGIFHLNEFSSDEEEEEEDDDRA
VGRVPGDEEAVEVEMYNISRAQLA*

mRNA from alignment at scaffold_3:650408..652565+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_261 ID=mRNA_261|Name=jgi.p|Nanoce1779_2|576742|organism=Nannochloropsis oceanica|type=mRNA|length=2158bp|location=Sequence derived from alignment at scaffold_3:650408..652565+ (Nannochloropsis oceanica)
ACAGGTCCAAACTGCCCCCACCTGCATCATGGCAAGGCGGCCCTGGCAGA
GCCTGTCGCTTGGGAGAGACCAACGACTCGGAGCGGGTGAAGAGCAAGAC
TAGCACACGACAGGTGGGCCAAGCAAAGCGATTCTTCCACTGCGTAACAG
CTTGCAGGCGGTGGCTGATCGTTTACGTCTAGCTATCCTCAGATAAGCTC
ACATTCACCAAGGGAGTCTATCACTGCTTCACTGCTGGCGTTGGGAGGAT
TCGAGAGAGGGAGGGCAAGAATCGACGGCATTACTGCATCGCTACATTAC
ATGTAATAGGCATGTCAGTCCTTTCTGTTGAGCTCCTGGTCCCTATTGTC
ATTTGCTTTTTGTTGTTGGTGGCGGCAAATCTTTTGCAACGGCGCATCCG
AGCCGAGTCGCATCCCTGGCATCCATGGCTTCGGTATGTCCGTATCTCCA
AGTACGTCCTGTCCTGGTATATCATCAGCATCAGTTTCACTCTTTGCAAC
AAGTGGGTGCTGCGGTACTGGCATGGGGACGGGTTTCCCTTCCCCATATT
TGTCACGGCCATGCATATGACAATCAAATTTTGCCTGACGCGCGTCATCA
ACCGTTGCTGCATCAGGCCTGAACGCCGCGTTCGCCCCTTGCCCTTGTGG
ACATCCCTGCGAGGCCCAATACCGATCGGGGTGCTTACGGGCGTGGACGT
GGTGTTAAGTAATTTAAGCTTCATGTTTATCAGTGTCACGTTTTACACCA
TCCTCAAGTCCGGTGCCTTGATTTGGATTCTGATCTGGGCCGTGATCATG
CGCCTCGAGCCCTTGACGATGGAGATTGTGGCCATATGCGTCTTGGTCAG
CATGGGCGTGAGCCTGGCTAGCTACGGGGAAGCATCATTTAGCCTCGTGG
GTTTCATACTCGTGACGGCTGCTTGTGCGTCTTCAGGCCTACGCTGGGCA
TTGACACAAGTCATGTTGGAAGGCAAAGGAGGGCTCGGCAGCGACCGACA
GGAGGTCTTGCACAGGTCGACATTGGTCAATCAATTGGGGGAGGGTGAGT
GGGACGTGGACGAGGAGGAGGACGAGTTCCGTGGCAATGATGGCCACAAC
GGGTTGCAAGGCAATGGTGGAGGCAGCAGTCGTGGTGAGGTTCGCGGGAG
GGACCACCAGCCGGAGCAGCATCGTCGTCGACAGAGCACGGCCCACCACC
CCCCTAGTGATCAGGATGGTGGCTCGGCGACAATAGATGCGAGCCTGCTT
CCGCCTATGCCCGCACCCTCGGTTCACCATCCGCGGGCCTTTGAAATTCT
GTACCACGTCTCCCCGGCCAGTGCACTGAGTTGCGTTACTGTCTTCTTGA
TGGTGGAGCTGCAGCCTTGCTTGCGCTCGCCTGTGTTTCATGATGGGGCT
TCGCTTTCTCAGCTGCTAGTCATTCTCATCTTGGGGGGCTTAATCTCGTT
TTTGCTGGTGTTGGCTGAGGTGAAGCTGGTGAAGATTTCGAGCTCGCTGA
CCATGAGCATGTTTGGGGCCGTCAAGGAGGTATGTGGATCATCTTTTTTC
TCCGGAGAGGAAGGGTTCCTCTTTCAAAGCTAGTATCTTTATCCTGAAAC
GGTGGGGTATGTTACCACGTTTTTGGCATTTGTTTGCCATCTCTCTACAG
ATTTACATCTCACACGTTTCCTCCAAATTAACCTACCCATGCCAGATAAT
CACCGTGGCCCTCTCCATGATGGTCTTCCACGATGACGTTTCCCCTCTCA
ACGTATCCGGTCTCCTGCTTGCCATTGTTGGTGCGGTCTGGTACCGGCAA
TACAAGCAAAAACCCGGCTCCTCCCTCTCCATTTATCTCTCAAGCGCCGG
GGAAGCTGGAGGCGAGGGAAGCAGCAGCGTGGGAGGGATGCGGACACCAA
CCACCGAATCAGGTATCTTCCACCTAAACGAGTTTTCGTCCGACGAGGAG
GAGGAAGAAGAAGACGATGACCGAGCTGTGGGGAGGGTTCCAGGAGATGA
AGAAGCTGTCGAGGTGGAGATGTACAACATAAGCCGCGCTCAACTTGCTT
GAAAGTGAGAAAGTTTGAAACCGAAAATGCTGCTCCCTTCGATTGTACCG
CCACTTTTGTGCATAAGAAATACATGAATAAAGTGTCAATAATTTTTTTT
TTGTGACG

Coding sequence (CDS) from alignment at scaffold_3:650408..652565+

>mRNA_261 ID=mRNA_261|Name=jgi.p|Nanoce1779_2|576742|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_3:650408..652565+ (Nannochloropsis oceanica)
ATGTCAGTCCTTTCTGTTGAGCTCCTGGTCCCTATTGTCATTTGCTTTTT
GTTGTTGGTGGCGGCAAATCTTTTGCAACGGCGCATCCGAGCCGAGTCGC
ATCCCTGGCATCCATGGCTTCGGTATGTCCGTATCTCCAAGTACGTCCTG
TCCTGGTATATCATCAGCATCAGTTTCACTCTTTGCAACAAGTGGGTGCT
GCGGTACTGGCATGGGGACGGGTTTCCCTTCCCCATATTTGTCACGGCCA
TGCATATGACAATCAAATTTTGCCTGACGCGCGTCATCAACCGTTGCTGC
ATCAGGCCTGAACGCCGCGTTCGCCCCTTGCCCTTGTGGACATCCCTGCG
AGGCCCAATACCGATCGGGGTGCTTACGGGCGTGGACGTGGTGTTAAGTA
ATTTAAGCTTCATGTTTATCAGTGTCACGTTTTACACCATCCTCAAGTCC
GGTGCCTTGATTTGGATTCTGATCTGGGCCGTGATCATGCGCCTCGAGCC
CTTGACGATGGAGATTGTGGCCATATGCGTCTTGGTCAGCATGGGCGTGA
GCCTGGCTAGCTACGGGGAAGCATCATTTAGCCTCGTGGGTTTCATACTC
GTGACGGCTGCTTGTGCGTCTTCAGGCCTACGCTGGGCATTGACACAAGT
CATGTTGGAAGGCAAAGGAGGGCTCGGCAGCGACCGACAGGAGGTCTTGC
ACAGGTCGACATTGGTCAATCAATTGGGGGAGGGTGAGTGGGACGTGGAC
GAGGAGGAGGACGAGTTCCGTGGCAATGATGGCCACAACGGGTTGCAAGG
CAATGGTGGAGGCAGCAGTCGTGGTGAGGTTCGCGGGAGGGACCACCAGC
CGGAGCAGCATCGTCGTCGACAGAGCACGGCCCACCACCCCCCTAGTGAT
CAGGATGGTGGCTCGGCGACAATAGATGCGAGCCTGCTTCCGCCTATGCC
CGCACCCTCGGTTCACCATCCGCGGGCCTTTGAAATTCTGTACCACGTCT
CCCCGGCCAGTGCACTGAGTTGCGTTACTGTCTTCTTGATGGTGGAGCTG
CAGCCTTGCTTGCGCTCGCCTGTGTTTCATGATGGGGCTTCGCTTTCTCA
GCTGCTAGTCATTCTCATCTTGGGGGGCTTAATCTCGTTTTTGCTGGTGT
TGGCTGAGGTGAAGCTGGTGAAGATTTCGAGCTCGCTGACCATGAGCATG
TTTGGGGCCGTCAAGGAGATAATCACCGTGGCCCTCTCCATGATGGTCTT
CCACGATGACGTTTCCCCTCTCAACGTATCCGGTCTCCTGCTTGCCATTG
TTGGTGCGGTCTGGTACCGGCAATACAAGCAAAAACCCGGCTCCTCCCTC
TCCATTTATCTCTCAAGCGCCGGGGAAGCTGGAGGCGAGGGAAGCAGCAG
CGTGGGAGGGATGCGGACACCAACCACCGAATCAGGTATCTTCCACCTAA
ACGAGTTTTCGTCCGACGAGGAGGAGGAAGAAGAAGACGATGACCGAGCT
GTGGGGAGGGTTCCAGGAGATGAAGAAGCTGTCGAGGTGGAGATGTACAA
CATAAGCCGCGCTCAACTTGCTTGAATGTCAGTCCTTTCTGTTGAGCTCC
TGGTCCCTATTGTCATTTGCTTTTTGTTGTTGGTGGCGGCAAATCTTTTG
CAACGGCGCATCCGAGCCGAGTCGCATCCCTGGCATCCATGGCTTCGGTA
TGTCCGTATCTCCAAGTACGTCCTGTCCTGGTATATCATCAGCATCAGTT
TCACTCTTTGCAACAAGTGGGTGCTGCGGTACTGGCATGGGGACGGGTTT
CCCTTCCCCATATTTGTCACGGCCATGCATATGACAATCAAATTTTGCCT
GACGCGCGTCATCAACCGTTGCTGCATCAGGCCTGAACGCCGCGTTCGCC
CCTTGCCCTTGTGGACATCCCTGCGAGGCCCAATACCGATCGGGGTGCTT
ACGGGCGTGGACGTGGTGTTAAGTAATTTAAGCTTCATGTTTATCAGTGT
CACGTTTTACACCATCCTCAAGTCCGGTGCCTTGATTTGGATTCTGATCT
GGGCCGTGATCATGCGCCTCGAGCCCTTGACGATGGAGATTGTGGCCATA
TGCGTCTTGGTCAGCATGGGCGTGAGCCTGGCTAGCTACGGGGAAGCATC
ATTTAGCCTCGTGGGTTTCATACTCGTGACGGCTGCTTGTGCGTCTTCAG
GCCTACGCTGGGCATTGACACAAGTCATGTTGGAAGGCAAAGGAGGGCTC
GGCAGCGACCGACAGGAGGTCTTGCACAGGTCGACATTGGTCAATCAATT
GGGGGAGGGTGAGTGGGACGTGGACGAGGAGGAGGACGAGTTCCGTGGCA
ATGATGGCCACAACGGGTTGCAAGGCAATGGTGGAGGCAGCAGTCGTGGT
GAGGTTCGCGGGAGGGACCACCAGCCGGAGCAGCATCGTCGTCGACAGAG
CACGGCCCACCACCCCCCTAGTGATCAGGATGGTGGCTCGGCGACAATAG
ATGCGAGCCTGCTTCCGCCTATGCCCGCACCCTCGGTTCACCATCCGCGG
GCCTTTGAAATTCTGTACCACGTCTCCCCGGCCAGTGCACTGAGTTGCGT
TACTGTCTTCTTGATGGTGGAGCTGCAGCCTTGCTTGCGCTCGCCTGTGT
TTCATGATGGGGCTTCGCTTTCTCAGCTGCTAGTCATTCTCATCTTGGGG
GGCTTAATCTCGTTTTTGCTGGTGTTGGCTGAGGTGAAGCTGGTGAAGAT
TTCGAGCTCGCTGACCATGAGCATGTTTGGGGCCGTCAAGGAGATAATCA
CCGTGGCCCTCTCCATGATGGTCTTCCACGATGACGTTTCCCCTCTCAAC
GTATCCGGTCTCCTGCTTGCCATTGTTGGTGCGGTCTGGTACCGGCAATA
CAAGCAAAAACCCGGCTCCTCCCTCTCCATTTATCTCTCAAGCGCCGGGG
AAGCTGGAGGCGAGGGAAGCAGCAGCGTGGGAGGGATGCGGACACCAACC
ACCGAATCAGGTATCTTCCACCTAAACGAGTTTTCGTCCGACGAGGAGGA
GGAAGAAGAAGACGATGACCGAGCTGTGGGGAGGGTTCCAGGAGATGAAG
AAGCTGTCGAGGTGGAGATGTACAACATAAGCCGCGCTCAACTTGCTTGA

Synonyms

Publications