jgi.p|Nanoce1779_2|625011, mRNA_2607 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|625011
Unique Name	mRNA_2607
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2033
Alignment location	scaffold_5:756735..759199 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	625097
Track	FilteredModels2
ProteinId	625011

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:756735..759199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625011	gene_2607	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|625011	mRNA_2607-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2607	CDS_2607	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:756735..759199+
coding sequence from alignment at scaffold_5:756735..759199+

mRNA sequence

>mRNA_2607 ID=mRNA_2607|Name=jgi.p|Nanoce1779_2|625011|organism=Nannochloropsis oceanica|type=mRNA|length=2033bp
GGAGGGGTGGAAGAGAACGGGTCAAGCCAAGGCCAAAGGTAGATGTGTAA
GCACGATAGTGGAATAGATCAGACGAAAGTGGGACAAAGGAAGCGGTGGG
TGTATTCGTGTGCACGCGGACTGGGAGGCAAAGAGGTGGAGTGGCAGGGG
TGGAACGACGAGGGGGATGACGATGATTGTTTGTGGAGTAGTTAAGCTGC
ACACGCGTCCTTCGCCTCCTTTTTCTCATCTAGATGAGGGAACCTTGGCT
CTGAGTGACTGGCGCGGTTTTGTATTAGCGAACTTAGCTACCCGATGGAT
TTGACATTTGTTTTCATACATGTTGGGGATGGGCAATGTTTGGTTCAAGA
AAGACAAAGAAGGTAGGACGATGGTCACCAGCTAATACTTTGTTTTGATG
GGTTGAATCCCGTTACCTGCACGAGACTCCGAGGGGGAGGAGGAGGTTGG
GAAGAGCACGTTACGCTCTCGAAGGCCGCTTCAGCTTACTCTTCGGCCAG
TCCTTATCCAACATTGAACTCGATATTTGGAGCAATGTATCGTTCGCGAG
GGTTTTCTGTACTCTTGCTCGCTTTCCATAACGGTACCAAAGGAGAAAGG
CAGAATGAGGGAGTCTCCCGGGAAACGGACAGAAAAATATCTTGCGCGAT
TCGATGGCCCAGCACTTTGCTGTCCCCATTTCATGTACTAGTGCATGCAC
CATAAGCTCTCTTCGCCACTCACATGCAATTTTGACATTCACTGTAGCCA
TACAAGTTACAGTATGGGCAAGAAAGGCCTACGCAAGGCTGGGGCGGCGG
GTCTGGACTCCGAGGAGCGCATGGCATTGGAAGAAGAGGACGAGTTTGCC
AAGGAGCTTGCGGCGGCCGAGGAGATTAGAAGGGAGCAGACCCTGGCTGG
TGGTGGGGCGGCTAACATGAACGGTAATGATGATGAGGATGACGAGGACG
AGGATGATGAAACAGCCTTGCAGCCCCGGCTCCGGGAATTCCTCAACAAT
CAGAATGGGCTGCGGCAAGTGCTGGTGGAAATCGAGACCCAAAATGGCCC
GCGGCCTTGGCCCGAGACCATGGAGGTATGCCAGTTTCCGCTTGGGTTGG
ACGATGTACACGATGATCTGGCACGAGAGACGGCGTTTTATCGCGTGGCG
TTGGCGGCGGTGAAGGAGGGACGGGCGCGGTTGGCCAAGCACAATGTCCC
TTACAAGCGACCGGAGGATTTCTTTTGTGATATGCTCAAGAGTGACGATC
ATATGGCGCGGGTCAAGGACCGCTTGTTGTTCGAGCAGAAGAAGATCACG
GCCGTGGAGGAACGCCGCAAGCAGCAGGAGAACAGGAAGTTCAGCAAGGC
ACTCAAATCACACAAAGCCAAGGAAAAGACAGAGGACAAAAAGCGCACCC
TGGATGCTGTTAAACAATGGAAAAAGGATAAGGCGCACCGGGGTGGTCCG
TTGCAGGATGACGATGGCCTGGACGACGTATTGGCAGGGCGCTCGCCTCG
GGGACTGTTTGGAGCCCGTGGCCGTGGTCGTGGCGGCAGGGGAGGGGGGG
CTGGAGGAGCCGAAGGGAGTCGACGGTTGTCCAAAGACAAGAAATATGGG
TTTGGAGGACCGAAGCGTCATGCCAAAGCTACGGACTCTAAGAGCTTGAA
TGATTTCTCGGCGTTCAATCCAAAGAAGGGCAAGAGTTTTGGACCGAAGG
GTGGGAGTGGAGGGGCGAGGGGTGGGAGACGCGGTGGGAATGCGCGAGGG
AGGGGAGGTGGGGCTAAAAAAGGGGGAAACCGACCCGGCAAAACGTCCAG
GGCGAAGGCGCGCACGAAGCGCTAATTACATATGGATGTGATAAAAATTG
ATTGCGTCATTGCGTGAATCATTATTCATCTTGTTTTCCCCCGGGAAAAA
CTCCGAAGAAAATCTTTGACAAAGCAAAACCAAAGGAGAAAAAGCACGGA
TGCGGAAGAATAGACTCGACCCCACACGCGTATACGAAAAATCCACTTGT
TGGGGAACATTTCAGCAAAACAAATATTTGTAC

protein sequence of jgi.p|Nanoce1779_2|625011

>mRNA_2607-protein ID=mRNA_2607-protein|Name=jgi.p|Nanoce1779_2|625011|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MHHKLSSPLTCNFDIHCSHTSYSMGKKGLRKAGAAGLDSEERMALEEEDE
FAKELAAAEEIRREQTLAGGGAANMNGNDDEDDEDEDDETALQPRLREFL
NNQNGLRQVLVEIETQNGPRPWPETMEVCQFPLGLDDVHDDLARETAFYR
VALAAVKEGRARLAKHNVPYKRPEDFFCDMLKSDDHMARVKDRLLFEQKK
ITAVEERRKQQENRKFSKALKSHKAKEKTEDKKRTLDAVKQWKKDKAHRG
GPLQDDDGLDDVLAGRSPRGLFGARGRGRGGRGGGAGGAEGSRRLSKDKK
YGFGGPKRHAKATDSKSLNDFSAFNPKKGKSFGPKGGSGGARGGRRGGNA
RGRGGGAKKGGNRPGKTSRAKARTKR*

mRNA from alignment at scaffold_5:756735..759199+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2607 ID=mRNA_2607|Name=jgi.p|Nanoce1779_2|625011|organism=Nannochloropsis oceanica|type=mRNA|length=2465bp|location=Sequence derived from alignment at scaffold_5:756735..759199+ (Nannochloropsis oceanica)
GGAGGGGTGGAAGAGAACGGGTCAAGCCAAGGCCAAAGGTAGATGTGTAA
GCACGATAGTGGAATAGATCAGACGAAAGTGGGACAAAGGAAGCGGTGGG
TGTATTCGTGTGCACGCGGACTGGGAGGCAAAGAGGTGGAGTGGCAGGGG
TGGAACGACGAGGGGGATGACGATGATTGTTTGTGGAGTAGTTAAGCTGC
ACACGCGTCCTTCGCCTCCTTTTTCTCATCTAGATGAGGGAACCTTGGCT
CTGAGTGACTGGCGCGGTTTTGTATTAGCGAACTTAGCTACCCGATGGAT
TTGACATTTGTTTTCATACATGTTGGGGATGGGCAATGTTTGGTTCAAGA
AAGACAAAGAAGGTAGGACGATGGTCACCAGCTAATACTTTGTTTTGATG
GGTTGAATCCCGTTACCTGCACGAGACTCCGAGGGGGAGGAGGAGGTTGG
GAAGAGCACGTTACGCTCTCGAAGGCCGCTTCAGCTTACTCTTCGGCCAG
TCCTTATCCAACATTGAACTCGATATTTGGAGCAATGTATCGTTCGCGAG
GGTTTTCTGTACTCTTGCTCGCTTTCCATAACGGTACCAAAGGAGAAAGG
CAGAATGAGGGAGTCTCCCGGGAAACGGACAGAAAAATATCTTGCGCGAT
TCGATGGCCCAGCACTTTGCTGTCCCCATTTCATGTACTAGTGCATGCAC
CATAAGCTCTCTTCGCCACTCACATGCAATTTTGACATTCACTGTAGCCA
TACAAGTTACAGTATGGGCAAGAAAGGCCTACGCAAGGCTGGGGCGGCGG
GTCTGGACTCCGAGGAGCGCATGGCATTGGAAGAAGAGGACGAGTTTGCC
AAGGAGCTTGCGGCGGCCGAGGAGATTAGAAGGGAGCAGACCCTGGCTGG
TGGTGGGGCGGCTAACATGAACGGTAATGATGATGAGGATGACGAGGACG
AGGATGATGAAACAGCCTTGCAGCCCCGGCTCCGGGAATTCCTCAACAAT
CAGAATGGGCTGCGGCAAGTGCTGGTGGAAATCGAGACCCAAAATGGCCC
GCGGCCTTGGCCCGAGACCATGGAGGTATGCCAGTTTCCGCTTGGGTTGG
ACGATGTACACGATGATCTGGCACGAGAGACGGCGTTTTATCGCGTGGCG
TTGGCGGCGGTGAAGGAGGGACGGGCGCGGTTGGCCAAGCACAATGTCCC
TTACAAGCGACCGGAGGATTTCTTTTGTGATATGCTCAAGAGTGACGATC
ATATGGCGCGGGTACGTTCTTTTTTCCATTCAGAGGAGAAATGAGAGTTC
TAGCCTGATTGCGTGATTTGGTTATCGCGTTGATGTACGGTGGACAGCTA
TGATGTATTTACTTTTGGGAGGAGATGGCTTGGGGGGGGACATTTGGGTA
ATTTGTGGGAGACAATCGACAGACCTGTGTTATCTACGACATTAAATTGT
ACGTGTTTTCTATCCTTGTCTCACTAACACAGGTCAAGGACCGCTTGTTG
TTCGAGCAGAAGAAGATCACGGCCGTGGAGGAACGCCGCAAGCAGCAGGA
GAACAGGAAGTTCAGCAAGGCACTCAAATCACACAAAGCCAAGGAAAAGA
CAGAGGACAAAAAGCGCACCCTGGATGCTGTTAAACAATGGAAAAAGGAT
AAGGCGCACCGGTACGTGTACAGAGAAGCGGGAGGAAGAGAAAAGAGTGA
GGGGAATGAGAAGTAAAAGGAGACGTAAACAGGAAGAGAGCAAAAATGAG
AGCAGATGACTGGTGCGTGACTGGTGCCAAACTACGCGGGGAAGAGAATG
AGATGATGTGTCGATTCATATAAGAGAACTCACTCGCATCGTCTCCTTGT
TGTTAATACCAATAAATCACAGGGGTGGTCCGTTGCAGGATGACGATGGC
CTGGACGACGTATTGGCAGGGCGCTCGCCTCGGGGACTGTTTGGAGCCCG
TGGCCGTGGTCGTGGCGGCAGGGGAGGGGGGGCTGGAGGAGCCGAAGGGA
GTCGACGGTTGTCCAAAGACAAGAAATATGGGTTTGGAGGACCGAAGCGT
CATGCCAAAGCTACGGACTCTAAGAGCTTGAATGATTTCTCGGCGTTCAA
TCCAAAGAAGGGCAAGAGTTTTGGACCGAAGGGTGGGAGTGGAGGGGCGA
GGGGTGGGAGACGCGGTGGGAATGCGCGAGGGAGGGGAGGTGGGGCTAAA
AAAGGGGGAAACCGACCCGGCAAAACGTCCAGGGCGAAGGCGCGCACGAA
GCGCTAATTACATATGGATGTGATAAAAATTGATTGCGTCATTGCGTGAA
TCATTATTCATCTTGTTTTCCCCCGGGAAAAACTCCGAAGAAAATCTTTG
ACAAAGCAAAACCAAAGGAGAAAAAGCACGGATGCGGAAGAATAGACTCG
ACCCCACACGCGTATACGAAAAATCCACTTGTTGGGGAACATTTCAGCAA
AACAAATATTTGTAC

Coding sequence (CDS) from alignment at scaffold_5:756735..759199+

>mRNA_2607 ID=mRNA_2607|Name=jgi.p|Nanoce1779_2|625011|organism=Nannochloropsis oceanica|type=CDS|length=3393bp|location=Sequence derived from alignment at scaffold_5:756735..759199+ (Nannochloropsis oceanica)
ATGCACCATAAGCTCTCTTCGCCACTCACATGCAATTTTGACATTCACTG
TAGCCATACAAGTTACAGTATGGGCAAGAAAGGCCTACGCAAGGCTGGGG
CGGCGGGTCTGGACTCCGAGGAGCGCATGGCATTGGAAGAAGAGGACGAG
TTTGCCAAGGAGCTTGCGGCGGCCGAGGAGATTAGAAGGGAGCAGACCCT
GGCTGGTGGTGGGGCGGCTAACATGAACGGTAATGATGATGAGGATGACG
AGGACGAGGATGATGAAACAGCCTTGCAGCCCCGGCTCCGGGAATTCCTC
AACAATCAGAATGGGCTGCGGCAAGTGCTGGTGGAAATCGAGACCCAAAA
TGGCCCGCGGCCTTGGCCCGAGACCATGGAGGTATGCCAGTTTCCGCTTG
GGTTGGACGATGTACACGATGATCTGGCACGAGAGACGGCGTTTTATCGC
GTGGCGTTGGCGGCGGTGAAGGAGGGACGGGCGCGGTTGGCCAAGCACAA
TGTCCCTTACAAGCGACCGGAGGATTTCTTTTGTGATATGCTCAAGAGTG
ACGATCATATGGCGCGGGTCAAGGACCGCTTGTTGTTCGAGCAGAAGAAG
ATCACGGCCGTGGAGGAACGCCGCAAGCAGCAGGAGAACAGGAAGTTCAG
CAAGGCACTCAAATCACACAAAGCCAAGGAAAAGACAGAGGACAAAAAGC
GCACCCTGGATGCTGTTAAACAATGGAAAAAGGATAAGGCGCACCGGGGT
GGTCCGTTGCAGGATGACGATGGCCTGGACGACGTATTGGCAGGGCGCTC
GCCTCGGGGACTGTTTGGAGCCCGTGGCCGTGGTCGTGGCGGCAGGGGAG
GGGGGGCTGGAGGAGCCGAAGGGAGTCGACGGTTGTCCAAAGACAAGAAA
TATGGGTTTGGAGGACCGAAGCGTCATGCCAAAGCTACGGACTCTAAGAG
CTTGAATGATTTCTCGGCGTTCAATCCAAAGAAGGGCAAGAGTTTTGGAC
CGAAGGGTGGGAGTGGAGGGGCGAGGGGTGGGAGACGCGGTGGGAATGCG
CGAGGGAGGGGAGGTGGGGCTAAAAAAGGGGGAAACCGACCCGGCAAAAC
GTCCAGGGCGAAGGCGCGCACGAAGCGCTAAATGCACCATAAGCTCTCTT
CGCCACTCACATGCAATTTTGACATTCACTGTAGCCATACAAGTTACAGT
ATGGGCAAGAAAGGCCTACGCAAGGCTGGGGCGGCGGGTCTGGACTCCGA
GGAGCGCATGGCATTGGAAGAAGAGGACGAGTTTGCCAAGGAGCTTGCGG
CGGCCGAGGAGATTAGAAGGGAGCAGACCCTGGCTGGTGGTGGGGCGGCT
AACATGAACGGTAATGATGATGAGGATGACGAGGACGAGGATGATGAAAC
AGCCTTGCAGCCCCGGCTCCGGGAATTCCTCAACAATCAGAATGGGCTGC
GGCAAGTGCTGGTGGAAATCGAGACCCAAAATGGCCCGCGGCCTTGGCCC
GAGACCATGGAGGTATGCCAGTTTCCGCTTGGGTTGGACGATGTACACGA
TGATCTGGCACGAGAGACGGCGTTTTATCGCGTGGCGTTGGCGGCGGTGA
AGGAGGGACGGGCGCGGTTGGCCAAGCACAATGTCCCTTACAAGCGACCG
GAGGATTTCTTTTGTGATATGCTCAAGAGTGACGATCATATGGCGCGGGT
CAAGGACCGCTTGTTGTTCGAGCAGAAGAAGATCACGGCCGTGGAGGAAC
GCCGCAAGCAGCAGGAGAACAGGAAGTTCAGCAAGGCACTCAAATCACAC
AAAGCCAAGGAAAAGACAGAGGACAAAAAGCGCACCCTGGATGCTGTTAA
ACAATGGAAAAAGGATAAGGCGCACCGGGGTGGTCCGTTGCAGGATGACG
ATGGCCTGGACGACGTATTGGCAGGGCGCTCGCCTCGGGGACTGTTTGGA
GCCCGTGGCCGTGGTCGTGGCGGCAGGGGAGGGGGGGCTGGAGGAGCCGA
AGGGAGTCGACGGTTGTCCAAAGACAAGAAATATGGGTTTGGAGGACCGA
AGCGTCATGCCAAAGCTACGGACTCTAAGAGCTTGAATGATTTCTCGGCG
TTCAATCCAAAGAAGGGCAAGAGTTTTGGACCGAAGGGTGGGAGTGGAGG
GGCGAGGGGTGGGAGACGCGGTGGGAATGCGCGAGGGAGGGGAGGTGGGG
CTAAAAAAGGGGGAAACCGACCCGGCAAAACGTCCAGGGCGAAGGCGCGC
ACGAAGCGCTAAATGCACCATAAGCTCTCTTCGCCACTCACATGCAATTT
TGACATTCACTGTAGCCATACAAGTTACAGTATGGGCAAGAAAGGCCTAC
GCAAGGCTGGGGCGGCGGGTCTGGACTCCGAGGAGCGCATGGCATTGGAA
GAAGAGGACGAGTTTGCCAAGGAGCTTGCGGCGGCCGAGGAGATTAGAAG
GGAGCAGACCCTGGCTGGTGGTGGGGCGGCTAACATGAACGGTAATGATG
ATGAGGATGACGAGGACGAGGATGATGAAACAGCCTTGCAGCCCCGGCTC
CGGGAATTCCTCAACAATCAGAATGGGCTGCGGCAAGTGCTGGTGGAAAT
CGAGACCCAAAATGGCCCGCGGCCTTGGCCCGAGACCATGGAGGTATGCC
AGTTTCCGCTTGGGTTGGACGATGTACACGATGATCTGGCACGAGAGACG
GCGTTTTATCGCGTGGCGTTGGCGGCGGTGAAGGAGGGACGGGCGCGGTT
GGCCAAGCACAATGTCCCTTACAAGCGACCGGAGGATTTCTTTTGTGATA
TGCTCAAGAGTGACGATCATATGGCGCGGGTCAAGGACCGCTTGTTGTTC
GAGCAGAAGAAGATCACGGCCGTGGAGGAACGCCGCAAGCAGCAGGAGAA
CAGGAAGTTCAGCAAGGCACTCAAATCACACAAAGCCAAGGAAAAGACAG
AGGACAAAAAGCGCACCCTGGATGCTGTTAAACAATGGAAAAAGGATAAG
GCGCACCGGGGTGGTCCGTTGCAGGATGACGATGGCCTGGACGACGTATT
GGCAGGGCGCTCGCCTCGGGGACTGTTTGGAGCCCGTGGCCGTGGTCGTG
GCGGCAGGGGAGGGGGGGCTGGAGGAGCCGAAGGGAGTCGACGGTTGTCC
AAAGACAAGAAATATGGGTTTGGAGGACCGAAGCGTCATGCCAAAGCTAC
GGACTCTAAGAGCTTGAATGATTTCTCGGCGTTCAATCCAAAGAAGGGCA
AGAGTTTTGGACCGAAGGGTGGGAGTGGAGGGGCGAGGGGTGGGAGACGC
GGTGGGAATGCGCGAGGGAGGGGAGGTGGGGCTAAAAAAGGGGGAAACCG
ACCCGGCAAAACGTCCAGGGCGAAGGCGCGCACGAAGCGCTAA

Synonyms

Publications