jgi.p|Nanoce1779_2|580910, mRNA_2606 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580910
Unique Name	mRNA_2606
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1390
Alignment location	scaffold_5:753779..755739 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580996
Track	FilteredModels2
ProteinId	580910

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:753779..755739 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580910	gene_2606	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580910	mRNA_2606-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2606	CDS_2606	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:753779..755739+
coding sequence from alignment at scaffold_5:753779..755739+

mRNA sequence

>mRNA_2606 ID=mRNA_2606|Name=jgi.p|Nanoce1779_2|580910|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp
AGGGCGTCTTCCTGCTGCCGCACTGCTGTGCACTGCTGTGCAAAGGGACT
CGTCTCTGCCCATGCATTTGCACTATGATCGTTTTCTTGCCGCACTGGCG
CCATCCCTGCTGCTCCTCATTGCCCCTCTACCAGACGTCGACGCCTTCCA
CGCACGACTTCCACACACACCCTTGACGACGACAACAACCATTGCCACGA
CGACGACGACGGCCCCAAAACCAGCGGCCGCAAAGATCACTATGCCCCCT
TCTTTTCGCCGTACTTCGACCTCCTCCCCCCTCTTTTCCGGCGACAGCAG
CCATGCTACTATTCTCCCAATTCTCCGAGACCCCGAAGAGTCATACATCA
GCGCAGTAGAGCTAGGTGTACATAAGGCCTCATATCCATCAGCCATAATT
TTCCTGCTCGGCATCCAAGCGGGGTTGCAAGTGGGTCTGGGAGCAGCAAT
GGCAGCGTCGACGCTGGCGGGAGTTCCTGGTATAAAGGCGAGCGACCCAG
GTTTGGCCAAGCTGATTTACGGCTTTTGTGGTCTTCCTTGCGGGCTGCTG
TTGACAGCAACGACGGGCACGCAATTGTTTACTGGCAATACCGCGATTGT
CTCTGTGGCCTTGATGGAGAGAAAGATCAAATTTCGCCAGCTAGTTAAGA
CCTGGATATGGTCCTACTTGGGTAATATGGTCGGTGCTGCATTGCTGGCG
AGCTTGTGCACGTATGCCGGTGTCTTCAAGAGTGCTGCGGCCTCCATAGT
GTCCGTGGCGGTCTATAAAGCCGGCCTGCCGTTTGGGGTGCTTGTGGCGC
GTGGGGCCCTGTGCAATTACCTAGTCTGCATGGCCGTCTGGGTCAGCCAA
GCTGCTGCTGATCTAGTCAGTAAAGCGGCGGCCATCATCCTTATCATCAC
CATCTTCGCCTCGTTGGGATTCGAACACTCAGTCGCCAACATGCTAATCG
GCCCATTTTCCGCCCTCAACGGCGGCCCTTCTTACCTTCATTTCTTTCTA
CGTAACATCGTGCCTGTTTCTATAGGAAATATTTTTGCGGGTGTTGTTCT
GGTGGCGCTTTCAAATTATTTGTCTTTTGGTTCGGGTAGCAAACTGTGGA
TGAAGAGGAAAGGGCACGGCAAGGGATTCAACCCGGCGGCGACATCCTCG
CGATAGGGACACCAAAGAAAAAGAAAAGTCCTGGGAACAAAGGGAAAAAG
GTATAGAAAAAAAAAGGGATCATGAGAACGTGCGGGCTGAAAAGCAAGAC
ACCTTCTTTTGCGTCCAATTTTATCGTTGCAATCATGTAAAAATGATCGC
CTGGCAATTAATCATTGCCAGGTGTACCTTTTGGTACATCTCCAACACAT
GGTATGTGCCCGTTGCAGGGAACGGGCACACACCAAAATA

protein sequence of jgi.p|Nanoce1779_2|580910

>mRNA_2606-protein ID=mRNA_2606-protein|Name=jgi.p|Nanoce1779_2|580910|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MHLHYDRFLAALAPSLLLLIAPLPDVDAFHARLPHTPLTTTTTIATTTTT
APKPAAAKITMPPSFRRTSTSSPLFSGDSSHATILPILRDPEESYISAVE
LGVHKASYPSAIIFLLGIQAGLQVGLGAAMAASTLAGVPGIKASDPGLAK
LIYGFCGLPCGLLLTATTGTQLFTGNTAIVSVALMERKIKFRQLVKTWIW
SYLGNMVGAALLASLCTYAGVFKSAAASIVSVAVYKAGLPFGVLVARGAL
CNYLVCMAVWVSQAAADLVSKAAAIILIITIFASLGFEHSVANMLIGPFS
ALNGGPSYLHFFLRNIVPVSIGNIFAGVVLVALSNYLSFGSGSKLWMKRK
GHGKGFNPAATSSR*

mRNA from alignment at scaffold_5:753779..755739+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2606 ID=mRNA_2606|Name=jgi.p|Nanoce1779_2|580910|organism=Nannochloropsis oceanica|type=mRNA|length=1961bp|location=Sequence derived from alignment at scaffold_5:753779..755739+ (Nannochloropsis oceanica)
AGGGCGTCTTCCTGCTGCCGCACTGCTGTGCACTGCTGTGCAAAGGGACT
CGTCTCTGCCCATGCATTTGCACTATGATCGTTTTCTTGCCGCACTGGCG
CCATCCCTGCTGCTCCTCATTGCCCCTCTACCAGACGTCGACGCCTTCCA
CGCACGACTTCCACACACACCCTTGACGACGACAACAACCATTGCCACGA
CGACGACGACGGCCCCAAAACCAGCGGCCGCAAAGATCACTATGCCCCCT
TCTTTTCGCCGTACTTCGACCTCCTCCCCCCTCTTTTCCGGCGACAGCAG
CCATGCTACTATTCTCCCAATTCTCCGAGACCCCGAAGAGTCATACATCA
GCGCAGTAGAGCTAGGTGTACATAAGGCCTCATATCCATCAGCCATAATT
TTCCTGCTCGGCATCCAAGCGGGGTTGCAAGTGGGTCTGGGAGCAGCAAT
GGCAGCGTCGACGCTGGCGGGAGTTCCTGGTATAAAGGCGAGCGACCCAG
GTTTGGCCAAGCTGATTTACGGCTTTTGTGGTCTTCCTTGCGGGCTGCTG
TTGACAGCAACGACGGTATGTGTGGGGGAAGAGAAGGTTGGGTGGATGTG
TGGGGATGCAGAGCGAAGGAAGGGGGAGGATGTCGGGACGCAGACTTTTG
CTTTGCTCTTTCTCATGTATTTCTATTCATCTATATGAACAGGGCACGCA
ATTGTTTACTGGCAATACCGCGATTGTCTCTGTGGCCTTGATGGAGAGAA
AGGTGGGCAATTAGTGGGATTCAAAAGAGGGGAGTACGTTTTTCCCCCGT
CACCAAACTAATTAAAACAAAATACAAATAAATTACTCACGAATATATAT
GATAGATCAAATTTCGCCAGCTAGTTAAGACCTGGATATGGTCCTACTTG
GGTAATATGGTCGGTGCTGCATTGCTGGCGAGCTTGTGCACGTATGCCGG
TGTCTTCAAGAGTGCTGCGGCCTCCATAGTGTCCGTGGCGGTCTATAAAG
CCGGCCTGCCGTTTGGGGTGGTGCGTCGGAAGAGAGGGAGAGAGGGAACA
AGAGGGAGGATGACTGCAGATGCGTTTATCATTGTGAAAAGCGCTGGCGC
TAGGCATCATGGTTTCTGACTGTTTGCTCCTCTTCTCCCCTCCCTCCCCT
ACCTTCCTTTCCTCACCTCCAGCTTGTGGCGCGTGGGGCCCTGTGCAATT
ACCTAGTCTGCATGGCCGTCTGGGTCAGCCAAGCTGCTGCTGATCTAGTC
AGTAAAGCGGCGGCCATCATCCTTATCATCACCATCTTCGCCTCGTTGGG
ATTCGAACACTCAGTCGCCAACATGCTAATCGGTAAGGAGGGAGGCAGAG
AGGGAGGGAGAAAGTTTCTTGCAATGAATGGCCGGTGTTCAATTGGAGAG
GCCTTGAGGATGCTGTTTAAGGTTCCTCGGATGGTGAAGTTCCGGATAAA
TATTTTCGAATCCTCACCTCCGCTCCCTCCCTTTCTCCCTTCCTCCTTCC
CTCCGTACATCAATTTAATAGGCCCATTTTCCGCCCTCAACGGCGGCCCT
TCTTACCTTCATTTCTTTCTACGTAACATCGTGCCTGTTTCTATAGGAAA
TATTTTTGCGGGTGTTGTTCTGGTGGCGCTTTCAAATTATTTGTCTTTTG
GTTCGGGTAGCAAACTGTGGATGAAGAGGAAAGGGCACGGCAAGGGATTC
AACCCGGCGGCGACATCCTCGCGATAGGGACACCAAAGAAAAAGAAAAGT
CCTGGGAACAAAGGGAAAAAGGTATAGAAAAAAAAAGGGATCATGAGAAC
GTGCGGGCTGAAAAGCAAGACACCTTCTTTTGCGTCCAATTTTATCGTTG
CAATCATGTAAAAATGATCGCCTGGCAATTAATCATTGCCAGGTGTACCT
TTTGGTACATCTCCAACACATGGTATGTGCCCGTTGCAGGGAACGGGCAC
ACACCAAAATA

Coding sequence (CDS) from alignment at scaffold_5:753779..755739+

>mRNA_2606 ID=mRNA_2606|Name=jgi.p|Nanoce1779_2|580910|organism=Nannochloropsis oceanica|type=CDS|length=5475bp|location=Sequence derived from alignment at scaffold_5:753779..755739+ (Nannochloropsis oceanica)
ATGCATTTGCACTATGATCGTTTTCTTGCCGCACTGGCGCCATCCCTGCT
GCTCCTCATTGCCCCTCTACCAGACGTCGACGCCTTCCACGCACGACTTC
CACACACACCCTTGACGACGACAACAACCATTGCCACGACGACGACGACG
GCCCCAAAACCAGCGGCCGCAAAGATCACTATGCCCCCTTCTTTTCGCCG
TACTTCGACCTCCTCCCCCCTCTTTTCCGGCGACAGCAGCCATGCTACTA
TTCTCCCAATTCTCCGAGACCCCGAAGAGTCATACATCAGCGCAGTAGAG
CTAGGTGTACATAAGGCCTCATATCCATCAGCCATAATTTTCCTGCTCGG
CATCCAAGCGGGGTTGCAAGTGGGTCTGGGAGCAGCAATGGCAGCGTCGA
CGCTGGCGGGAGTTCCTGGTATAAAGGCGAGCGACCCAGGTTTGGCCAAG
CTGATTTACGGCTTTTGTGGTCTTCCTTGCGGGCTGCTGTTGACAGCAAC
GACGGGCACGCAATTGTTTACTGGCAATACCGCGATTGTCTCTGTGGCCT
TGATGGAGAGAAAGATCAAATTTCGCCAGCTAGTTAAGACCTGGATATGG
TCCTACTTGGGTAATATGGTCGGTGCTGCATTGCTGGCGAGCTTGTGCAC
GTATGCCGGTGTCTTCAAGAGTGCTGCGGCCTCCATAGTGTCCGTGGCGG
TCTATAAAGCCGGCCTGCCGTTTGGGGTGCTTGTGGCGCGTGGGGCCCTG
TGCAATTACCTAGTCTGCATGGCCGTCTGGGTCAGCCAAGCTGCTGCTGA
TCTAGTCAGTAAAGCGGCGGCCATCATCCTTATCATCACCATCTTCGCCT
CGTTGGGATTCGAACACTCAGTCGCCAACATGCTAATCGGCCCATTTTCC
GCCCTCAACGGCGGCCCTTCTTACCTTCATTTCTTTCTACGTAACATCGT
GCCTGTTTCTATAGGAAATATTTTTGCGGGTGTTGTTCTGGTGGCGCTTT
CAAATTATTTGTCTTTTGGTTCGGGTAGCAAACTGTGGATGAAGAGGAAA
GGGCACGGCAAGGGATTCAACCCGGCGGCGACATCCTCGCGATAGATGCA
TTTGCACTATGATCGTTTTCTTGCCGCACTGGCGCCATCCCTGCTGCTCC
TCATTGCCCCTCTACCAGACGTCGACGCCTTCCACGCACGACTTCCACAC
ACACCCTTGACGACGACAACAACCATTGCCACGACGACGACGACGGCCCC
AAAACCAGCGGCCGCAAAGATCACTATGCCCCCTTCTTTTCGCCGTACTT
CGACCTCCTCCCCCCTCTTTTCCGGCGACAGCAGCCATGCTACTATTCTC
CCAATTCTCCGAGACCCCGAAGAGTCATACATCAGCGCAGTAGAGCTAGG
TGTACATAAGGCCTCATATCCATCAGCCATAATTTTCCTGCTCGGCATCC
AAGCGGGGTTGCAAGTGGGTCTGGGAGCAGCAATGGCAGCGTCGACGCTG
GCGGGAGTTCCTGGTATAAAGGCGAGCGACCCAGGTTTGGCCAAGCTGAT
TTACGGCTTTTGTGGTCTTCCTTGCGGGCTGCTGTTGACAGCAACGACGG
GCACGCAATTGTTTACTGGCAATACCGCGATTGTCTCTGTGGCCTTGATG
GAGAGAAAGATCAAATTTCGCCAGCTAGTTAAGACCTGGATATGGTCCTA
CTTGGGTAATATGGTCGGTGCTGCATTGCTGGCGAGCTTGTGCACGTATG
CCGGTGTCTTCAAGAGTGCTGCGGCCTCCATAGTGTCCGTGGCGGTCTAT
AAAGCCGGCCTGCCGTTTGGGGTGCTTGTGGCGCGTGGGGCCCTGTGCAA
TTACCTAGTCTGCATGGCCGTCTGGGTCAGCCAAGCTGCTGCTGATCTAG
TCAGTAAAGCGGCGGCCATCATCCTTATCATCACCATCTTCGCCTCGTTG
GGATTCGAACACTCAGTCGCCAACATGCTAATCGGCCCATTTTCCGCCCT
CAACGGCGGCCCTTCTTACCTTCATTTCTTTCTACGTAACATCGTGCCTG
TTTCTATAGGAAATATTTTTGCGGGTGTTGTTCTGGTGGCGCTTTCAAAT
TATTTGTCTTTTGGTTCGGGTAGCAAACTGTGGATGAAGAGGAAAGGGCA
CGGCAAGGGATTCAACCCGGCGGCGACATCCTCGCGATAGATGCATTTGC
ACTATGATCGTTTTCTTGCCGCACTGGCGCCATCCCTGCTGCTCCTCATT
GCCCCTCTACCAGACGTCGACGCCTTCCACGCACGACTTCCACACACACC
CTTGACGACGACAACAACCATTGCCACGACGACGACGACGGCCCCAAAAC
CAGCGGCCGCAAAGATCACTATGCCCCCTTCTTTTCGCCGTACTTCGACC
TCCTCCCCCCTCTTTTCCGGCGACAGCAGCCATGCTACTATTCTCCCAAT
TCTCCGAGACCCCGAAGAGTCATACATCAGCGCAGTAGAGCTAGGTGTAC
ATAAGGCCTCATATCCATCAGCCATAATTTTCCTGCTCGGCATCCAAGCG
GGGTTGCAAGTGGGTCTGGGAGCAGCAATGGCAGCGTCGACGCTGGCGGG
AGTTCCTGGTATAAAGGCGAGCGACCCAGGTTTGGCCAAGCTGATTTACG
GCTTTTGTGGTCTTCCTTGCGGGCTGCTGTTGACAGCAACGACGGGCACG
CAATTGTTTACTGGCAATACCGCGATTGTCTCTGTGGCCTTGATGGAGAG
AAAGATCAAATTTCGCCAGCTAGTTAAGACCTGGATATGGTCCTACTTGG
GTAATATGGTCGGTGCTGCATTGCTGGCGAGCTTGTGCACGTATGCCGGT
GTCTTCAAGAGTGCTGCGGCCTCCATAGTGTCCGTGGCGGTCTATAAAGC
CGGCCTGCCGTTTGGGGTGCTTGTGGCGCGTGGGGCCCTGTGCAATTACC
TAGTCTGCATGGCCGTCTGGGTCAGCCAAGCTGCTGCTGATCTAGTCAGT
AAAGCGGCGGCCATCATCCTTATCATCACCATCTTCGCCTCGTTGGGATT
CGAACACTCAGTCGCCAACATGCTAATCGGCCCATTTTCCGCCCTCAACG
GCGGCCCTTCTTACCTTCATTTCTTTCTACGTAACATCGTGCCTGTTTCT
ATAGGAAATATTTTTGCGGGTGTTGTTCTGGTGGCGCTTTCAAATTATTT
GTCTTTTGGTTCGGGTAGCAAACTGTGGATGAAGAGGAAAGGGCACGGCA
AGGGATTCAACCCGGCGGCGACATCCTCGCGATAGATGCATTTGCACTAT
GATCGTTTTCTTGCCGCACTGGCGCCATCCCTGCTGCTCCTCATTGCCCC
TCTACCAGACGTCGACGCCTTCCACGCACGACTTCCACACACACCCTTGA
CGACGACAACAACCATTGCCACGACGACGACGACGGCCCCAAAACCAGCG
GCCGCAAAGATCACTATGCCCCCTTCTTTTCGCCGTACTTCGACCTCCTC
CCCCCTCTTTTCCGGCGACAGCAGCCATGCTACTATTCTCCCAATTCTCC
GAGACCCCGAAGAGTCATACATCAGCGCAGTAGAGCTAGGTGTACATAAG
GCCTCATATCCATCAGCCATAATTTTCCTGCTCGGCATCCAAGCGGGGTT
GCAAGTGGGTCTGGGAGCAGCAATGGCAGCGTCGACGCTGGCGGGAGTTC
CTGGTATAAAGGCGAGCGACCCAGGTTTGGCCAAGCTGATTTACGGCTTT
TGTGGTCTTCCTTGCGGGCTGCTGTTGACAGCAACGACGGGCACGCAATT
GTTTACTGGCAATACCGCGATTGTCTCTGTGGCCTTGATGGAGAGAAAGA
TCAAATTTCGCCAGCTAGTTAAGACCTGGATATGGTCCTACTTGGGTAAT
ATGGTCGGTGCTGCATTGCTGGCGAGCTTGTGCACGTATGCCGGTGTCTT
CAAGAGTGCTGCGGCCTCCATAGTGTCCGTGGCGGTCTATAAAGCCGGCC
TGCCGTTTGGGGTGCTTGTGGCGCGTGGGGCCCTGTGCAATTACCTAGTC
TGCATGGCCGTCTGGGTCAGCCAAGCTGCTGCTGATCTAGTCAGTAAAGC
GGCGGCCATCATCCTTATCATCACCATCTTCGCCTCGTTGGGATTCGAAC
ACTCAGTCGCCAACATGCTAATCGGCCCATTTTCCGCCCTCAACGGCGGC
CCTTCTTACCTTCATTTCTTTCTACGTAACATCGTGCCTGTTTCTATAGG
AAATATTTTTGCGGGTGTTGTTCTGGTGGCGCTTTCAAATTATTTGTCTT
TTGGTTCGGGTAGCAAACTGTGGATGAAGAGGAAAGGGCACGGCAAGGGA
TTCAACCCGGCGGCGACATCCTCGCGATAGATGCATTTGCACTATGATCG
TTTTCTTGCCGCACTGGCGCCATCCCTGCTGCTCCTCATTGCCCCTCTAC
CAGACGTCGACGCCTTCCACGCACGACTTCCACACACACCCTTGACGACG
ACAACAACCATTGCCACGACGACGACGACGGCCCCAAAACCAGCGGCCGC
AAAGATCACTATGCCCCCTTCTTTTCGCCGTACTTCGACCTCCTCCCCCC
TCTTTTCCGGCGACAGCAGCCATGCTACTATTCTCCCAATTCTCCGAGAC
CCCGAAGAGTCATACATCAGCGCAGTAGAGCTAGGTGTACATAAGGCCTC
ATATCCATCAGCCATAATTTTCCTGCTCGGCATCCAAGCGGGGTTGCAAG
TGGGTCTGGGAGCAGCAATGGCAGCGTCGACGCTGGCGGGAGTTCCTGGT
ATAAAGGCGAGCGACCCAGGTTTGGCCAAGCTGATTTACGGCTTTTGTGG
TCTTCCTTGCGGGCTGCTGTTGACAGCAACGACGGGCACGCAATTGTTTA
CTGGCAATACCGCGATTGTCTCTGTGGCCTTGATGGAGAGAAAGATCAAA
TTTCGCCAGCTAGTTAAGACCTGGATATGGTCCTACTTGGGTAATATGGT
CGGTGCTGCATTGCTGGCGAGCTTGTGCACGTATGCCGGTGTCTTCAAGA
GTGCTGCGGCCTCCATAGTGTCCGTGGCGGTCTATAAAGCCGGCCTGCCG
TTTGGGGTGCTTGTGGCGCGTGGGGCCCTGTGCAATTACCTAGTCTGCAT
GGCCGTCTGGGTCAGCCAAGCTGCTGCTGATCTAGTCAGTAAAGCGGCGG
CCATCATCCTTATCATCACCATCTTCGCCTCGTTGGGATTCGAACACTCA
GTCGCCAACATGCTAATCGGCCCATTTTCCGCCCTCAACGGCGGCCCTTC
TTACCTTCATTTCTTTCTACGTAACATCGTGCCTGTTTCTATAGGAAATA
TTTTTGCGGGTGTTGTTCTGGTGGCGCTTTCAAATTATTTGTCTTTTGGT
TCGGGTAGCAAACTGTGGATGAAGAGGAAAGGGCACGGCAAGGGATTCAA
CCCGGCGGCGACATCCTCGCGATAG

Synonyms

Publications