jgi.p|Nanoce1779_2|580905, mRNA_2605 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580905
Unique NamemRNA_2605
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length792
Alignment locationscaffold_5:752359..753461 +

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Properties
Property NameValue
TranscriptId580991
TrackFilteredModels2
ProteinId580905
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:752359..753461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580905gene_2605Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580905mRNA_2605-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2605CDS_2605Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2605 ID=mRNA_2605|Name=jgi.p|Nanoce1779_2|580905|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
AGGTTGAGAAGAAAGATCTTGTCGAACTTTTCTCGCAAGCCAGAGCCAAC
AAGCCAATGCGCGCTCCTTGCAATATGATGGCGGCTATCCGCCTTGTCCA
ACACATCAGCCCCCGCCGACACAACCAGCAGCCCATTCTTAGAACTTTGA
TGGCATCACAAAAAATATCGCCATCAGCGGTGACAACAGCAAAGCATGCC
TCGGTAGGTTCTGCGAGAGGTCATGAGGGGTCAATCTGTGACCAGCATCA
GCATTCTCTTGGCACCTCATTTCCATCCAGGACGGTGTCTCTACTTCCAA
GGAACGCAACTTCCTACTCTTCTTCATTGTGCCCTTCCTTCTCGTCGTCA
TCCGGTACCAGCGAGGTTGACGGAGGCTTTCAAACGGAGCGGGATTTCCA
CGTGGTGGCGGACGCGACGCTGGACGAGGTGCAGGCATTGGTGGATAGTT
TGGAGGACACAGTGGACGATTATGAGGCGAACTTATCGCAAGGCGTTCTC
AACATCCTAATGGGTGAGCACGGGACCTGGGTACTGAATAAACAAACGCC
CAACCGACAAATCTGGTGGTCTTCTCCCTTAAGTGGTCCTATGCGCTTTG
AGTATGATCCAAGCTTAAAACAATGGGTGGCAACGCGAGGCAGGAAACAG
TTGTTCACGTTGCTGGCGGAGGAGGTACAGAAAGTGGCGGGTGTTGACAT
CCAGGCACGGCGAACCACCAAGCATTAAACATAGGATTAGTACGAGGGTT
AGAAAATTGTATCAAAGAATCAAATGCAAGCGTCAAATAAAT
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protein sequence of jgi.p|Nanoce1779_2|580905

>mRNA_2605-protein ID=mRNA_2605-protein|Name=jgi.p|Nanoce1779_2|580905|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MRAPCNMMAAIRLVQHISPRRHNQQPILRTLMASQKISPSAVTTAKHASV
GSARGHEGSICDQHQHSLGTSFPSRTVSLLPRNATSYSSSLCPSFSSSSG
TSEVDGGFQTERDFHVVADATLDEVQALVDSLEDTVDDYEANLSQGVLNI
LMGEHGTWVLNKQTPNRQIWWSSPLSGPMRFEYDPSLKQWVATRGRKQLF
TLLAEEVQKVAGVDIQARRTTKH*
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mRNA from alignment at scaffold_5:752359..753461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2605 ID=mRNA_2605|Name=jgi.p|Nanoce1779_2|580905|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp|location=Sequence derived from alignment at scaffold_5:752359..753461+ (Nannochloropsis oceanica)
AGGTTGAGAAGAAAGATCTTGTCGAACTTTTCTCGCAAGCCAGAGCCAAC
AAGCCAATGCGCGCTCCTTGCAATATGATGGCGGCTATCCGCCTTGTCCA
ACACATCAGCCCCCGCCGACACAACCAGCAGCCCATTCTTAGAACTTTGA
TGGCATCACAAAAAATATCGCCATCAGCGGTGACAACAGCAAAGCATGCC
TCGGTAGGTTCTGCGAGAGGTCATGAGGGGTCAATCTGTGACCAGCATCA
GCATTCTCTTGGCACCTCATTTCCATCCAGGACGGTGTCTCTACTTCCAA
GGAACGCAACTTCCTACTCTTCTTCATTGTGCCCTTCCTTCTCGTCGTCA
TCCGGTACCAGCGAGGTTGACGGAGGCTTTCAAACGGAGCGGGATTTCCA
CGTGGTGGCGGACGCGACGCTGGACGAGGTGCAGGCATTGGTGGATAGTT
TGGAGGACACAGTGGACGATTATGAGGCGAACTTATCGGTGCGTGTTTGG
TTGGAGTAAGTCCAGAAAGGCAGTCTAGATACATAGCTTCTATAACTTGG
GGACTGGCATATTACGTTGGTGAACGAGGCGGTAGTGTGTGAAAAATGCG
TGCGTGGCTTGCCCGTGGGAATATAAGCCTGTGAGCTGTTGTACAGGTCT
GCGCATACAGATATGAGCACATCCAAGATTGCGGTATCGGCTCATGCGTG
ATTCGTTCGCCATCTCTTATCTGCATATTAACATAAACATACGTCTCTCC
AACGTGTCTCGTTTTCAGTCTATCTCTTTCTTCCTCTCCATCTTCACAGC
AAGGCGTTCTCAACATCCTAATGGGTGAGCACGGGACCTGGGTACTGAAT
AAACAAACGCCCAACCGACAAATCTGGTGGTCTTCTCCCTTAAGTGGTCC
TATGCGCTTTGAGTATGATCCAAGCTTAAAACAATGGGTGGCAACGCGAG
GCAGGAAACAGTTGTTCACGTTGCTGGCGGAGGAGGTACAGAAAGTGGCG
GGTGTTGACATCCAGGCACGGCGAACCACCAAGCATTAAACATAGGATTA
GTACGAGGGTTAGAAAATTGTATCAAAGAATCAAATGCAAGCGTCAAATA
AAT
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Coding sequence (CDS) from alignment at scaffold_5:752359..753461+

>mRNA_2605 ID=mRNA_2605|Name=jgi.p|Nanoce1779_2|580905|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_5:752359..753461+ (Nannochloropsis oceanica)
ATGCGCGCTCCTTGCAATATGATGGCGGCTATCCGCCTTGTCCAACACAT
CAGCCCCCGCCGACACAACCAGCAGCCCATTCTTAGAACTTTGATGGCAT
CACAAAAAATATCGCCATCAGCGGTGACAACAGCAAAGCATGCCTCGGTA
GGTTCTGCGAGAGGTCATGAGGGGTCAATCTGTGACCAGCATCAGCATTC
TCTTGGCACCTCATTTCCATCCAGGACGGTGTCTCTACTTCCAAGGAACG
CAACTTCCTACTCTTCTTCATTGTGCCCTTCCTTCTCGTCGTCATCCGGT
ACCAGCGAGGTTGACGGAGGCTTTCAAACGGAGCGGGATTTCCACGTGGT
GGCGGACGCGACGCTGGACGAGGTGCAGGCATTGGTGGATAGTTTGGAGG
ACACAGTGGACGATTATGAGGCGAACTTATCGCAAGGCGTTCTCAACATC
CTAATGGGTGAGCACGGGACCTGGGTACTGAATAAACAAACGCCCAACCG
ACAAATCTGGTGGTCTTCTCCCTTAAGTGGTCCTATGCGCTTTGAGTATG
ATCCAAGCTTAAAACAATGGGTGGCAACGCGAGGCAGGAAACAGTTGTTC
ACGTTGCTGGCGGAGGAGGTACAGAAAGTGGCGGGTGTTGACATCCAGGC
ACGGCGAACCACCAAGCATTAAATGCGCGCTCCTTGCAATATGATGGCGG
CTATCCGCCTTGTCCAACACATCAGCCCCCGCCGACACAACCAGCAGCCC
ATTCTTAGAACTTTGATGGCATCACAAAAAATATCGCCATCAGCGGTGAC
AACAGCAAAGCATGCCTCGGTAGGTTCTGCGAGAGGTCATGAGGGGTCAA
TCTGTGACCAGCATCAGCATTCTCTTGGCACCTCATTTCCATCCAGGACG
GTGTCTCTACTTCCAAGGAACGCAACTTCCTACTCTTCTTCATTGTGCCC
TTCCTTCTCGTCGTCATCCGGTACCAGCGAGGTTGACGGAGGCTTTCAAA
CGGAGCGGGATTTCCACGTGGTGGCGGACGCGACGCTGGACGAGGTGCAG
GCATTGGTGGATAGTTTGGAGGACACAGTGGACGATTATGAGGCGAACTT
ATCGCAAGGCGTTCTCAACATCCTAATGGGTGAGCACGGGACCTGGGTAC
TGAATAAACAAACGCCCAACCGACAAATCTGGTGGTCTTCTCCCTTAAGT
GGTCCTATGCGCTTTGAGTATGATCCAAGCTTAAAACAATGGGTGGCAAC
GCGAGGCAGGAAACAGTTGTTCACGTTGCTGGCGGAGGAGGTACAGAAAG
TGGCGGGTGTTGACATCCAGGCACGGCGAACCACCAAGCATTAA
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Synonyms
Publications