jgi.p|Nanoce1779_2|628624, mRNA_2604 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628624
Unique NamemRNA_2604
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length593
Alignment locationscaffold_5:750774..751580 +

Link to JBrowse

Properties
Property NameValue
TranscriptId628710
TrackFilteredModels2
ProteinId628624
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:750774..751580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628624gene_2604Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628624mRNA_2604-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2604CDS_2604Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2604 ID=mRNA_2604|Name=jgi.p|Nanoce1779_2|628624|organism=Nannochloropsis oceanica|type=mRNA|length=593bp
CAGGTGTATGCAAAGGGGTCAGCTGGATCATTCCCCTCGACATGGACGGC
GACGACGAGCAATGTTACTAACATCACTCTGTCGCCCCTCAAACCACACT
ACTACTCATCTAGCAGCCCCATGCCGGTGGCATACCCAACTCAAAGGTAC
AGTCCGCCATGCGACGCGCGACTGGCAGAAGGGTGTATTCGTGGCTTCTA
TGTTGGGGCATTGTGGGGCGCCATGTTTCATCGGTACGATGTCACACCTT
TACCGGCAGAGGCGTCGCGAGGACAAGTCATTGTCCAAGCCGTGAGAATA
CGGACCGCCGGCGCCTGCAAGCATTCCTTCCTCCTGGCCACGTTCCTGGG
GCTGTACAGTGGCACCTCGTGCGCAGCGGAGAAGACAATCGGGCGACGGA
ATTGGGCCACCAGTTTTGTGGGAGGTTTTAGCGCAGGCACTTTCGCAGGG
CTTACAACAGGCCACCCGCATCATGCAATTACTTGGGGGGTAGGGACGGG
CTTGGCGAGCATGATTGTGTATGCTTTACAGGGCGGCGGGCCGTGAGGAG
GTGGGGCATGGGCCATGATGCAAGGCGGTGTGGAGGAGGCCTG
back to top

protein sequence of jgi.p|Nanoce1779_2|628624

>mRNA_2604-protein ID=mRNA_2604-protein|Name=jgi.p|Nanoce1779_2|628624|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MPVAYPTQRYSPPCDARLAEGCIRGFYVGALWGAMFHRYDVTPLPAEASR
GQVIVQAVRIRTAGACKHSFLLATFLGLYSGTSCAAEKTIGRRNWATSFV
GGFSAGTFAGLTTGHPHHAITWGVGTGLASMIVYALQGGGP*
back to top

mRNA from alignment at scaffold_5:750774..751580+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2604 ID=mRNA_2604|Name=jgi.p|Nanoce1779_2|628624|organism=Nannochloropsis oceanica|type=mRNA|length=807bp|location=Sequence derived from alignment at scaffold_5:750774..751580+ (Nannochloropsis oceanica)
CAGGTGTATGCAAAGGGGTCAGCTGGATCATTCCCCTCGACATGGACGGC
GACGACGAGCAATGTTACTAACATCACTCTGTCGCCCCTCAAACCACACT
ACTACTCATCTAGCAGCCCCATGCCGGTGGCATACCCAACTCAAAGGTAC
AGTCCGCCATGCGACGCGCGACTGGCAGAAGGTAAGAGACACTGGGCTAT
TATATTGCCACACCCACTCCACTCCCCCCTCTCCCACCCTCCCTAATCTC
TCGTCCTCTGTCTCTTGACTCCCCCAACCATTTCCCTCCAGGGTGTATTC
GTGGCTTCTATGTTGGGGCATTGTGGGGCGCCATGTTTCATCGGTACGAT
GTCACACCTTTACCGGCAGAGGCGTCGCGAGGACAAGTCATTGTCCAAGC
CGTGAGAATACGGACCGGTGCGTGACGGGAAGGTAGGGGATGGAAGGGCA
ACCGCATGCGCTGAATGCTCGCGAAGGCTAATTCACACCCTGACATCTGA
TAACTTTCCATTTAACCACAGCCGGCGCCTGCAAGCATTCCTTCCTCCTG
GCCACGTTCCTGGGGCTGTACAGTGGCACCTCGTGCGCAGCGGAGAAGAC
AATCGGGCGACGGAATTGGGCCACCAGTTTTGTGGGAGGTTTTAGCGCAG
GCACTTTCGCAGGGCTTACAACAGGCCACCCGCATCATGCAATTACTTGG
GGGGTAGGGACGGGCTTGGCGAGCATGATTGTGTATGCTTTACAGGGCGG
CGGGCCGTGAGGAGGTGGGGCATGGGCCATGATGCAAGGCGGTGTGGAGG
AGGCCTG
back to top

Coding sequence (CDS) from alignment at scaffold_5:750774..751580+

>mRNA_2604 ID=mRNA_2604|Name=jgi.p|Nanoce1779_2|628624|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_5:750774..751580+ (Nannochloropsis oceanica)
ATGCCGGTGGCATACCCAACTCAAAGGTACAGTCCGCCATGCGACGCGCG
ACTGGCAGAAGGGTGTATTCGTGGCTTCTATGTTGGGGCATTGTGGGGCG
CCATGTTTCATCGGTACGATGTCACACCTTTACCGGCAGAGGCGTCGCGA
GGACAAGTCATTGTCCAAGCCGTGAGAATACGGACCGCCGGCGCCTGCAA
GCATTCCTTCCTCCTGGCCACGTTCCTGGGGCTGTACAGTGGCACCTCGT
GCGCAGCGGAGAAGACAATCGGGCGACGGAATTGGGCCACCAGTTTTGTG
GGAGGTTTTAGCGCAGGCACTTTCGCAGGGCTTACAACAGGCCACCCGCA
TCATGCAATTACTTGGGGGGTAGGGACGGGCTTGGCGAGCATGATTGTGT
ATGCTTTACAGGGCGGCGGGCCGTGAATGCCGGTGGCATACCCAACTCAA
AGGTACAGTCCGCCATGCGACGCGCGACTGGCAGAAGGGTGTATTCGTGG
CTTCTATGTTGGGGCATTGTGGGGCGCCATGTTTCATCGGTACGATGTCA
CACCTTTACCGGCAGAGGCGTCGCGAGGACAAGTCATTGTCCAAGCCGTG
AGAATACGGACCGCCGGCGCCTGCAAGCATTCCTTCCTCCTGGCCACGTT
CCTGGGGCTGTACAGTGGCACCTCGTGCGCAGCGGAGAAGACAATCGGGC
GACGGAATTGGGCCACCAGTTTTGTGGGAGGTTTTAGCGCAGGCACTTTC
GCAGGGCTTACAACAGGCCACCCGCATCATGCAATTACTTGGGGGGTAGG
GACGGGCTTGGCGAGCATGATTGTGTATGCTTTACAGGGCGGCGGGCCGT
GAATGCCGGTGGCATACCCAACTCAAAGGTACAGTCCGCCATGCGACGCG
CGACTGGCAGAAGGGTGTATTCGTGGCTTCTATGTTGGGGCATTGTGGGG
CGCCATGTTTCATCGGTACGATGTCACACCTTTACCGGCAGAGGCGTCGC
GAGGACAAGTCATTGTCCAAGCCGTGAGAATACGGACCGCCGGCGCCTGC
AAGCATTCCTTCCTCCTGGCCACGTTCCTGGGGCTGTACAGTGGCACCTC
GTGCGCAGCGGAGAAGACAATCGGGCGACGGAATTGGGCCACCAGTTTTG
TGGGAGGTTTTAGCGCAGGCACTTTCGCAGGGCTTACAACAGGCCACCCG
CATCATGCAATTACTTGGGGGGTAGGGACGGGCTTGGCGAGCATGATTGT
GTATGCTTTACAGGGCGGCGGGCCGTGA
back to top
Synonyms
Publications