jgi.p|Nanoce1779_2|580896, mRNA_2603 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580896
Unique NamemRNA_2603
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1013
Alignment locationscaffold_5:749679..750691 -

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Properties
Property NameValue
TranscriptId580982
TrackFilteredModels2
ProteinId580896
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:749679..750691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580896gene_2603Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580896mRNA_2603-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2603CDS_2603Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2603 ID=mRNA_2603|Name=jgi.p|Nanoce1779_2|580896|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp
ATTGTGGGCCTCAGGCGTTGCGGTCTGCAACATGGAATCGTCAACCTCCC
CACCCAATGCGAGCGCCTTGCTCCAAGCCTACCTGGCCGCGCCTCTACCT
TACCTGGTGGACGACTGGGTCAAATCACCTTGTCCCACCGATGGATGTAC
GGCGGAAAAACGTTTTTACTGTGCGAATTGCGTCTGCTGGATAGGGGTGC
CTTCGCATGTGGACGCTCCTCGCCTACGCCTACCCGTGAATGTGGACATT
GTGCTGGCCGATAACCGCAAAAAATCCACTGCTATTCAAGTAGGTGTGGT
TGCTTCCTCTTCTATCCGTGTATGGGATTCGTGGACCGGGGGTTTGGAGG
CACTGGAAAGGGAAAATTGGGATGTGGAGAAGACTCTCGTTCTCTTTCCC
TCCAAAGACGCAATCACACTTGATGAGCTTCCCGTTGCAGATCTCGCATC
AATTGAACGTGTGGTTGTTTTGGATTCACGATGGAATAATACAACCAAGG
TGTTAGAGCACCCAGGGATCACGAGGTTGACCAAAAGGGTGAAGCTAAAG
GACCCTCCGAAAGAATCATTGTGTTGGCGCTATCACTCAAAGGGAGAGGG
TTTGTTGTCCTCCGCCGAAGCCTTGTATTTTCTACTCAAGGATTATGTCG
GCTTGACGGGAAAAGGTGCAAAACGATTGAATGACAAAGCAGATGGGAGC
GGGCGAGAGGAAGAGAGGGAGGATAAGGAGGAAACTGCACCGTTGGAGGA
AATGATGTATCTCTTCCGTCTCAATGTCAACGTCATCAAGGGTTCGTACG
AGAGAGGCGCGAGGAGGAAGCTGCCGTTGCCCATGGAGGCAGCTGGCAAA
CAGCGCTGTCGGGAAGTGCGTTGTCAATTGAAGGGGGTTGCCTACTCGAA
GAAATATAGACGGGGAGAGAGAGAAGGAGGAGGAACGGGGTGACGGAAAG
TTACTGCTGCCGGAAAAGACTGAAAATGGGAAGTAAGAAAATGAAAGAAG
CGTAATGAGGGAC
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protein sequence of jgi.p|Nanoce1779_2|580896

>mRNA_2603-protein ID=mRNA_2603-protein|Name=jgi.p|Nanoce1779_2|580896|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MESSTSPPNASALLQAYLAAPLPYLVDDWVKSPCPTDGCTAEKRFYCANC
VCWIGVPSHVDAPRLRLPVNVDIVLADNRKKSTAIQVGVVASSSIRVWDS
WTGGLEALERENWDVEKTLVLFPSKDAITLDELPVADLASIERVVVLDSR
WNNTTKVLEHPGITRLTKRVKLKDPPKESLCWRYHSKGEGLLSSAEALYF
LLKDYVGLTGKGAKRLNDKADGSGREEEREDKEETAPLEEMMYLFRLNVN
VIKGSYERGARRKLPLPMEAAGKQRCREVRCQLKGVAYSKKYRRGEREGG
GTG*
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mRNA from alignment at scaffold_5:749679..750691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2603 ID=mRNA_2603|Name=jgi.p|Nanoce1779_2|580896|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp|location=Sequence derived from alignment at scaffold_5:749679..750691- (Nannochloropsis oceanica)
ATTGTGGGCCTCAGGCGTTGCGGTCTGCAACATGGAATCGTCAACCTCCC
CACCCAATGCGAGCGCCTTGCTCCAAGCCTACCTGGCCGCGCCTCTACCT
TACCTGGTGGACGACTGGGTCAAATCACCTTGTCCCACCGATGGATGTAC
GGCGGAAAAACGTTTTTACTGTGCGAATTGCGTCTGCTGGATAGGGGTGC
CTTCGCATGTGGACGCTCCTCGCCTACGCCTACCCGTGAATGTGGACATT
GTGCTGGCCGATAACCGCAAAAAATCCACTGCTATTCAAGTAGGTGTGGT
TGCTTCCTCTTCTATCCGTGTATGGGATTCGTGGACCGGGGGTTTGGAGG
CACTGGAAAGGGAAAATTGGGATGTGGAGAAGACTCTCGTTCTCTTTCCC
TCCAAAGACGCAATCACACTTGATGAGCTTCCCGTTGCAGATCTCGCATC
AATTGAACGTGTGGTTGTTTTGGATTCACGATGGAATAATACAACCAAGG
TGTTAGAGCACCCAGGGATCACGAGGTTGACCAAAAGGGTGAAGCTAAAG
GACCCTCCGAAAGAATCATTGTGTTGGCGCTATCACTCAAAGGGAGAGGG
TTTGTTGTCCTCCGCCGAAGCCTTGTATTTTCTACTCAAGGATTATGTCG
GCTTGACGGGAAAAGGTGCAAAACGATTGAATGACAAAGCAGATGGGAGC
GGGCGAGAGGAAGAGAGGGAGGATAAGGAGGAAACTGCACCGTTGGAGGA
AATGATGTATCTCTTCCGTCTCAATGTCAACGTCATCAAGGGTTCGTACG
AGAGAGGCGCGAGGAGGAAGCTGCCGTTGCCCATGGAGGCAGCTGGCAAA
CAGCGCTGTCGGGAAGTGCGTTGTCAATTGAAGGGGGTTGCCTACTCGAA
GAAATATAGACGGGGAGAGAGAGAAGGAGGAGGAACGGGGTGACGGAAAG
TTACTGCTGCCGGAAAAGACTGAAAATGGGAAGTAAGAAAATGAAAGAAG
CGTAATGAGGGAC
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Coding sequence (CDS) from alignment at scaffold_5:749679..750691-

>mRNA_2603 ID=mRNA_2603|Name=jgi.p|Nanoce1779_2|580896|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_5:749679..750691- (Nannochloropsis oceanica)
ATGGAATCGTCAACCTCCCCACCCAATGCGAGCGCCTTGCTCCAAGCCTA
CCTGGCCGCGCCTCTACCTTACCTGGTGGACGACTGGGTCAAATCACCTT
GTCCCACCGATGGATGTACGGCGGAAAAACGTTTTTACTGTGCGAATTGC
GTCTGCTGGATAGGGGTGCCTTCGCATGTGGACGCTCCTCGCCTACGCCT
ACCCGTGAATGTGGACATTGTGCTGGCCGATAACCGCAAAAAATCCACTG
CTATTCAAGTAGGTGTGGTTGCTTCCTCTTCTATCCGTGTATGGGATTCG
TGGACCGGGGGTTTGGAGGCACTGGAAAGGGAAAATTGGGATGTGGAGAA
GACTCTCGTTCTCTTTCCCTCCAAAGACGCAATCACACTTGATGAGCTTC
CCGTTGCAGATCTCGCATCAATTGAACGTGTGGTTGTTTTGGATTCACGA
TGGAATAATACAACCAAGGTGTTAGAGCACCCAGGGATCACGAGGTTGAC
CAAAAGGGTGAAGCTAAAGGACCCTCCGAAAGAATCATTGTGTTGGCGCT
ATCACTCAAAGGGAGAGGGTTTGTTGTCCTCCGCCGAAGCCTTGTATTTT
CTACTCAAGGATTATGTCGGCTTGACGGGAAAAGGTGCAAAACGATTGAA
TGACAAAGCAGATGGGAGCGGGCGAGAGGAAGAGAGGGAGGATAAGGAGG
AAACTGCACCGTTGGAGGAAATGATGTATCTCTTCCGTCTCAATGTCAAC
GTCATCAAGGGTTCGTACGAGAGAGGCGCGAGGAGGAAGCTGCCGTTGCC
CATGGAGGCAGCTGGCAAACAGCGCTGTCGGGAAGTGCGTTGTCAATTGA
AGGGGGTTGCCTACTCGAAGAAATATAGACGGGGAGAGAGAGAAGGAGGA
GGAACGGGGTGA
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Synonyms
Publications