jgi.p|Nanoce1779_2|628621, mRNA_2601 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628621
Unique Name	mRNA_2601
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1446
Alignment location	scaffold_5:744526..746710 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628707
Track	FilteredModels2
ProteinId	628621

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:744526..746710 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628621	gene_2601	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628621	mRNA_2601-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2601	CDS_2601	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:744526..746710+
coding sequence from alignment at scaffold_5:744526..746710+

mRNA sequence

>mRNA_2601 ID=mRNA_2601|Name=jgi.p|Nanoce1779_2|628621|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp
CCTCTTCGTTCAGGCCCCCCGCGACAGCGTCCGGAGGCAACATGTCGATG
GGAGCTGGTAGTCCGTCAAAGCTGCAAGGCTTTATGGAGGGAAGCCAACA
GCTCGTCCCCCAAATCGGCGGCATGCCATTCATGACCGGCAACAACTACG
TCGATCTCCTTGTTACCATGACGCCCACCGAGATGATAACCAACTTCAAG
GCGGCTGCCCCCATCCGTGTTCAAGAAGCGGTTAAACGCACCGTGCTTCG
CTGCATCGGCTCCATCCAGGATTCCCTCGTTGAAGACGCCCATCGAACCA
CGGGGTTGATTTTCGCGCACCTGGTTTACAAGGCGCAAGTGACGGGTTAC
ATGCTTTTTAATGCAGAAGTGAAGGTCCAGGGTCTGTTGGCCGCTGCGGC
CCAGATGCAGGCGTTGCCTGTCATGGAGCAGCAGCACCAGCAGGACCACG
GGGTAGGGGCGGGTAATTTGCTGGAAGGGGGAAAAGGGGAGAGTCTGAGG
GGAGTGGGTGGGGGGTTGCTGACGAGCGATGAGGATGATGTGATGCGGCT
GGATGGGGTGGTGACTGTCACGAGCAGTGACGGGACTCGAGTGCAAGTCC
AAGCGCAAGATTATGTGGACGCGCTCAAAAAGGAAGCGGCCTCGCTCAAG
GCCGAGCTGGTGCGGATGGAGGGAGAGAAGCGTCAGATGGTCTCGAGGGA
CCTGCTTTCTTATATCTCGGACTTGTCGAGCCGGCAGAGTGGGGAATTGA
CAGGGGGGATGACGCAAGACGTGGTGGAGGCGATGAAGATGCTGACGAAT
CGGGTGTTGGCTTCTATTCAGGACAGGCCGATCGTGGAGAAAGAGAGCAT
GGAACTCGATTCGGCCGCCTTAGCCCAAATCATAATGTGGGGCCTCGTCA
CCGGCTACTCTCTCCGCGAACTTGAACGGGGGGTAGGGGAAGGGGAGGAG
ATCGTCCACCAAGAGGGGGACCGGGAGGGGGAGGGAGGAGTGGTAGTTGA
GGGGGAGGGGGAAGGCCAGGAGGAGGAGGAGGGGGTGGGTGGTCTGGATG
CTAATGTAAAGGAAGTTGATGCAGCAATTTGATTAGTTTATTTTTTACTG
GGCTGAGGATGATAACGAGGTGGAGGGAAGTGATTGGGATGGGGAAAGAG
ACTCGCAAAGCTCATATATAGCGCGATTTGGGAAGAAAATGGGAGCGAGG
AAGGAAGAGAAGCGGAGACAAAAGGCCGCGTCTCATACATCACAGGGTAA
GAAAAATGCGTGGAAGGGTGAAAGGGATTGAAGCGGAAGCTGAGGCCATG
TACACAATTAAGACATTCACATAACAAGAAAGGAAATTACTAGTTCTTTT
GCCGTTCCTACATCACTCTAGAACTATCGCATGCAACCTGCGTCCTATAG
GACTTGCATACGAGGGGGAGCCTTCCAACAAGAAATTGTTGCATAT

protein sequence of jgi.p|Nanoce1779_2|628621

>mRNA_2601-protein ID=mRNA_2601-protein|Name=jgi.p|Nanoce1779_2|628621|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MSMGAGSPSKLQGFMEGSQQLVPQIGGMPFMTGNNYVDLLVTMTPTEMIT
NFKAAAPIRVQEAVKRTVLRCIGSIQDSLVEDAHRTTGLIFAHLVYKAQV
TGYMLFNAEVKVQGLLAAAAQMQALPVMEQQHQQDHGVGAGNLLEGGKGE
SLRGVGGGLLTSDEDDVMRLDGVVTVTSSDGTRVQVQAQDYVDALKKEAA
SLKAELVRMEGEKRQMVSRDLLSYISDLSSRQSGELTGGMTQDVVEAMKM
LTNRVLASIQDRPIVEKESMELDSAALAQIIMWGLVTGYSLRELERGVGE
GEEIVHQEGDREGEGGVVVEGEGEGQEEEEGVGGLDANVKEVDAAI*

mRNA from alignment at scaffold_5:744526..746710+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2601 ID=mRNA_2601|Name=jgi.p|Nanoce1779_2|628621|organism=Nannochloropsis oceanica|type=mRNA|length=2185bp|location=Sequence derived from alignment at scaffold_5:744526..746710+ (Nannochloropsis oceanica)
CCTCTTCGTTCAGGCCCCCCGCGACAGCGTCCGGAGGCAACATGTCGATG
GGAGCTGGTAGTCCGTCAAAGCTGCAAGGCTTTATGGAGGGGTAGGTGTA
AAGGGAGGAATGGAGAGAGGGAAGGCTGCGATCGTGAATGTGAGATTGTT
TTGCTTCATCAACCGTGCGGTGAAGAATATCAGTTCAGAAATATTGAAAT
ACGAACGCATATATCCCTAATCGCTCACATTTCCTGAATTTTCTCCACTG
CCCCATCTGTAGAAGCCAACAGCTCGTCCCCCAAATCGGCGGCATGCCAT
TCATGACCGGCAACAACTACGTCGATCTCCTTGTTACCATGACGCCCACC
GAGATGATAACCAACTTCAAGGCGGCTGCCCCCATCCGTGTTCAAGAAGC
GGTTAAACGCACCGTGCTTCGCTGCATCGGCTCCATCCAGGATTCCCTCG
TTGAAGACGCCCATCGAACCACGGGGTTGATTTTCGCGCACCTGGTTTAC
AAGGCGCAAGTGACGGGTTACATGCTTTTTAATGCAGAAGTGAAGGTCCA
GGGTCTGTTGGCCGCTGCGGCCCAGATGCAGGCGTTGCCTGTCATGGAGC
AGCAGCACCAGCAGGACCACGGGGTAGGGGCGGGTAATTTGCTGGAAGGG
GGAAAAGGGGAGAGTCTGAGGGGAGTGGGTGGGGGGTTGCTGACGAGCGA
TGAGGATGATGTGATGCGGCTGGATGGGGTGGTGACTGTCACGAGCAGTG
TAAGTGACATGGATGGCGAACGCTTTTCTTTCCTTCCCTCCCTTTCTCTT
CTCCCTTTCTCCCTCTTTCCCTTTTCGTATCTCTTTGTTTGTCTCCCATT
CTCCTTATATCCAGACCTTGCACTATTAGTATCCACCGTGCACGCACATA
TATATGTATAATTATACTCACCCAGCCCATCAGCAGCATTTATATCGCCT
TCTCCAACCTCCCCCCCCCTCTTCCCCCCCCAAATCTTTCTTCCCTTTGT
AACTAGGACGGGACTCGAGTGCAAGTCCAAGCGCAAGATTATGTGGACGC
GCTCAAAAAGGAAGCGGCCTCGCTCAAGGCCGAGCTGGTGCGGATGGAGG
GAGAGAAGCGTCAGATGGTCTCGAGGGACCTGCTTTCTTATATCTCGGAC
TTGTCGAGCCGGCAGAGTGGGGAATTGACAGGGGGGATGACGCAAGACGT
GGTGGAGGCGATGAAGATGCTGACGAATCGGGTGTTGGCTTCTATTCAGG
ACAGGCCGATCGTGGAGAAAGGTGGGGCTGGAGGGAGGGAGGGAGAAAGG
GGAGGGGGGAATACTGAATTGTGTCGGGAATTTCGCTTGTCTCGTGATGA
TTAATATTAATTATCATCACCTGCCATGTAATTGTTTTCACTTCTCCATT
TTTAGATTGACCACTGAAATGCTGATCTCATTCCATCCCTCCCTCCTTAC
CTCTCGTCCTCTTACAGAGAGCATGGAACTCGATTCGGCCGCCTTAGCCC
AAATCATAATGTGGGGCCTCGTCACCGGCTACTCTCTCCGCGAACTTGAA
CGTGCATGGAACTATGGGCAACCCGCCAGTCCTTCCCTTCTTCGTCCTAC
CTCTCCCCAATATCCCACGAGCCGACCTCGCAGTCGAAGGCCACCACCTC
CTCCCCCCCCTCCGAGGGGGGGTAGGGGAAGGGGAGGAGATCGTCCACCA
AGAGGGGGACCGGGAGGGGGAGGGAGGAGTGGTAGTTGAGGGGGAGGGGG
AAGGCCAGGAGGAGGAGGAGGGGGTGGGTGGTCTGGATGCTAATGTAAAG
GAAGTTGATGCAGCAATTTGATTAGTTTATTTTTTACTGGGCTGAGGATG
ATAACGAGGTGGAGGGAAGTGATTGGGATGGGGAAAGAGACTCGCAAAGC
TCATATATAGCGCGATTTGGGAAGAAAATGGGAGCGAGGAAGGAAGAGAA
GCGGAGACAAAAGGCCGCGTCTCATACATCACAGGGTAAGAAAAATGCGT
GGAAGGGTGAAAGGGATTGAAGCGGAAGCTGAGGCCATGTACACAATTAA
GACATTCACATAACAAGAAAGGAAATTACTAGTTCTTTTGCCGTTCCTAC
ATCACTCTAGAACTATCGCATGCAACCTGCGTCCTATAGGACTTGCATAC
GAGGGGGAGCCTTCCAACAAGAAATTGTTGCATAT

Coding sequence (CDS) from alignment at scaffold_5:744526..746710+

>mRNA_2601 ID=mRNA_2601|Name=jgi.p|Nanoce1779_2|628621|organism=Nannochloropsis oceanica|type=CDS|length=5205bp|location=Sequence derived from alignment at scaffold_5:744526..746710+ (Nannochloropsis oceanica)
ATGTCGATGGGAGCTGGTAGTCCGTCAAAGCTGCAAGGCTTTATGGAGGG
AAGCCAACAGCTCGTCCCCCAAATCGGCGGCATGCCATTCATGACCGGCA
ACAACTACGTCGATCTCCTTGTTACCATGACGCCCACCGAGATGATAACC
AACTTCAAGGCGGCTGCCCCCATCCGTGTTCAAGAAGCGGTTAAACGCAC
CGTGCTTCGCTGCATCGGCTCCATCCAGGATTCCCTCGTTGAAGACGCCC
ATCGAACCACGGGGTTGATTTTCGCGCACCTGGTTTACAAGGCGCAAGTG
ACGGGTTACATGCTTTTTAATGCAGAAGTGAAGGTCCAGGGTCTGTTGGC
CGCTGCGGCCCAGATGCAGGCGTTGCCTGTCATGGAGCAGCAGCACCAGC
AGGACCACGGGGTAGGGGCGGGTAATTTGCTGGAAGGGGGAAAAGGGGAG
AGTCTGAGGGGAGTGGGTGGGGGGTTGCTGACGAGCGATGAGGATGATGT
GATGCGGCTGGATGGGGTGGTGACTGTCACGAGCAGTGACGGGACTCGAG
TGCAAGTCCAAGCGCAAGATTATGTGGACGCGCTCAAAAAGGAAGCGGCC
TCGCTCAAGGCCGAGCTGGTGCGGATGGAGGGAGAGAAGCGTCAGATGGT
CTCGAGGGACCTGCTTTCTTATATCTCGGACTTGTCGAGCCGGCAGAGTG
GGGAATTGACAGGGGGGATGACGCAAGACGTGGTGGAGGCGATGAAGATG
CTGACGAATCGGGTGTTGGCTTCTATTCAGGACAGGCCGATCGTGGAGAA
AGAGAGCATGGAACTCGATTCGGCCGCCTTAGCCCAAATCATAATGTGGG
GCCTCGTCACCGGCTACTCTCTCCGCGAACTTGAACGGGGGGTAGGGGAA
GGGGAGGAGATCGTCCACCAAGAGGGGGACCGGGAGGGGGAGGGAGGAGT
GGTAGTTGAGGGGGAGGGGGAAGGCCAGGAGGAGGAGGAGGGGGTGGGTG
GTCTGGATGCTAATGTAAAGGAAGTTGATGCAGCAATTTGAATGTCGATG
GGAGCTGGTAGTCCGTCAAAGCTGCAAGGCTTTATGGAGGGAAGCCAACA
GCTCGTCCCCCAAATCGGCGGCATGCCATTCATGACCGGCAACAACTACG
TCGATCTCCTTGTTACCATGACGCCCACCGAGATGATAACCAACTTCAAG
GCGGCTGCCCCCATCCGTGTTCAAGAAGCGGTTAAACGCACCGTGCTTCG
CTGCATCGGCTCCATCCAGGATTCCCTCGTTGAAGACGCCCATCGAACCA
CGGGGTTGATTTTCGCGCACCTGGTTTACAAGGCGCAAGTGACGGGTTAC
ATGCTTTTTAATGCAGAAGTGAAGGTCCAGGGTCTGTTGGCCGCTGCGGC
CCAGATGCAGGCGTTGCCTGTCATGGAGCAGCAGCACCAGCAGGACCACG
GGGTAGGGGCGGGTAATTTGCTGGAAGGGGGAAAAGGGGAGAGTCTGAGG
GGAGTGGGTGGGGGGTTGCTGACGAGCGATGAGGATGATGTGATGCGGCT
GGATGGGGTGGTGACTGTCACGAGCAGTGACGGGACTCGAGTGCAAGTCC
AAGCGCAAGATTATGTGGACGCGCTCAAAAAGGAAGCGGCCTCGCTCAAG
GCCGAGCTGGTGCGGATGGAGGGAGAGAAGCGTCAGATGGTCTCGAGGGA
CCTGCTTTCTTATATCTCGGACTTGTCGAGCCGGCAGAGTGGGGAATTGA
CAGGGGGGATGACGCAAGACGTGGTGGAGGCGATGAAGATGCTGACGAAT
CGGGTGTTGGCTTCTATTCAGGACAGGCCGATCGTGGAGAAAGAGAGCAT
GGAACTCGATTCGGCCGCCTTAGCCCAAATCATAATGTGGGGCCTCGTCA
CCGGCTACTCTCTCCGCGAACTTGAACGGGGGGTAGGGGAAGGGGAGGAG
ATCGTCCACCAAGAGGGGGACCGGGAGGGGGAGGGAGGAGTGGTAGTTGA
GGGGGAGGGGGAAGGCCAGGAGGAGGAGGAGGGGGTGGGTGGTCTGGATG
CTAATGTAAAGGAAGTTGATGCAGCAATTTGAATGTCGATGGGAGCTGGT
AGTCCGTCAAAGCTGCAAGGCTTTATGGAGGGAAGCCAACAGCTCGTCCC
CCAAATCGGCGGCATGCCATTCATGACCGGCAACAACTACGTCGATCTCC
TTGTTACCATGACGCCCACCGAGATGATAACCAACTTCAAGGCGGCTGCC
CCCATCCGTGTTCAAGAAGCGGTTAAACGCACCGTGCTTCGCTGCATCGG
CTCCATCCAGGATTCCCTCGTTGAAGACGCCCATCGAACCACGGGGTTGA
TTTTCGCGCACCTGGTTTACAAGGCGCAAGTGACGGGTTACATGCTTTTT
AATGCAGAAGTGAAGGTCCAGGGTCTGTTGGCCGCTGCGGCCCAGATGCA
GGCGTTGCCTGTCATGGAGCAGCAGCACCAGCAGGACCACGGGGTAGGGG
CGGGTAATTTGCTGGAAGGGGGAAAAGGGGAGAGTCTGAGGGGAGTGGGT
GGGGGGTTGCTGACGAGCGATGAGGATGATGTGATGCGGCTGGATGGGGT
GGTGACTGTCACGAGCAGTGACGGGACTCGAGTGCAAGTCCAAGCGCAAG
ATTATGTGGACGCGCTCAAAAAGGAAGCGGCCTCGCTCAAGGCCGAGCTG
GTGCGGATGGAGGGAGAGAAGCGTCAGATGGTCTCGAGGGACCTGCTTTC
TTATATCTCGGACTTGTCGAGCCGGCAGAGTGGGGAATTGACAGGGGGGA
TGACGCAAGACGTGGTGGAGGCGATGAAGATGCTGACGAATCGGGTGTTG
GCTTCTATTCAGGACAGGCCGATCGTGGAGAAAGAGAGCATGGAACTCGA
TTCGGCCGCCTTAGCCCAAATCATAATGTGGGGCCTCGTCACCGGCTACT
CTCTCCGCGAACTTGAACGGGGGGTAGGGGAAGGGGAGGAGATCGTCCAC
CAAGAGGGGGACCGGGAGGGGGAGGGAGGAGTGGTAGTTGAGGGGGAGGG
GGAAGGCCAGGAGGAGGAGGAGGGGGTGGGTGGTCTGGATGCTAATGTAA
AGGAAGTTGATGCAGCAATTTGAATGTCGATGGGAGCTGGTAGTCCGTCA
AAGCTGCAAGGCTTTATGGAGGGAAGCCAACAGCTCGTCCCCCAAATCGG
CGGCATGCCATTCATGACCGGCAACAACTACGTCGATCTCCTTGTTACCA
TGACGCCCACCGAGATGATAACCAACTTCAAGGCGGCTGCCCCCATCCGT
GTTCAAGAAGCGGTTAAACGCACCGTGCTTCGCTGCATCGGCTCCATCCA
GGATTCCCTCGTTGAAGACGCCCATCGAACCACGGGGTTGATTTTCGCGC
ACCTGGTTTACAAGGCGCAAGTGACGGGTTACATGCTTTTTAATGCAGAA
GTGAAGGTCCAGGGTCTGTTGGCCGCTGCGGCCCAGATGCAGGCGTTGCC
TGTCATGGAGCAGCAGCACCAGCAGGACCACGGGGTAGGGGCGGGTAATT
TGCTGGAAGGGGGAAAAGGGGAGAGTCTGAGGGGAGTGGGTGGGGGGTTG
CTGACGAGCGATGAGGATGATGTGATGCGGCTGGATGGGGTGGTGACTGT
CACGAGCAGTGACGGGACTCGAGTGCAAGTCCAAGCGCAAGATTATGTGG
ACGCGCTCAAAAAGGAAGCGGCCTCGCTCAAGGCCGAGCTGGTGCGGATG
GAGGGAGAGAAGCGTCAGATGGTCTCGAGGGACCTGCTTTCTTATATCTC
GGACTTGTCGAGCCGGCAGAGTGGGGAATTGACAGGGGGGATGACGCAAG
ACGTGGTGGAGGCGATGAAGATGCTGACGAATCGGGTGTTGGCTTCTATT
CAGGACAGGCCGATCGTGGAGAAAGAGAGCATGGAACTCGATTCGGCCGC
CTTAGCCCAAATCATAATGTGGGGCCTCGTCACCGGCTACTCTCTCCGCG
AACTTGAACGGGGGGTAGGGGAAGGGGAGGAGATCGTCCACCAAGAGGGG
GACCGGGAGGGGGAGGGAGGAGTGGTAGTTGAGGGGGAGGGGGAAGGCCA
GGAGGAGGAGGAGGGGGTGGGTGGTCTGGATGCTAATGTAAAGGAAGTTG
ATGCAGCAATTTGAATGTCGATGGGAGCTGGTAGTCCGTCAAAGCTGCAA
GGCTTTATGGAGGGAAGCCAACAGCTCGTCCCCCAAATCGGCGGCATGCC
ATTCATGACCGGCAACAACTACGTCGATCTCCTTGTTACCATGACGCCCA
CCGAGATGATAACCAACTTCAAGGCGGCTGCCCCCATCCGTGTTCAAGAA
GCGGTTAAACGCACCGTGCTTCGCTGCATCGGCTCCATCCAGGATTCCCT
CGTTGAAGACGCCCATCGAACCACGGGGTTGATTTTCGCGCACCTGGTTT
ACAAGGCGCAAGTGACGGGTTACATGCTTTTTAATGCAGAAGTGAAGGTC
CAGGGTCTGTTGGCCGCTGCGGCCCAGATGCAGGCGTTGCCTGTCATGGA
GCAGCAGCACCAGCAGGACCACGGGGTAGGGGCGGGTAATTTGCTGGAAG
GGGGAAAAGGGGAGAGTCTGAGGGGAGTGGGTGGGGGGTTGCTGACGAGC
GATGAGGATGATGTGATGCGGCTGGATGGGGTGGTGACTGTCACGAGCAG
TGACGGGACTCGAGTGCAAGTCCAAGCGCAAGATTATGTGGACGCGCTCA
AAAAGGAAGCGGCCTCGCTCAAGGCCGAGCTGGTGCGGATGGAGGGAGAG
AAGCGTCAGATGGTCTCGAGGGACCTGCTTTCTTATATCTCGGACTTGTC
GAGCCGGCAGAGTGGGGAATTGACAGGGGGGATGACGCAAGACGTGGTGG
AGGCGATGAAGATGCTGACGAATCGGGTGTTGGCTTCTATTCAGGACAGG
CCGATCGTGGAGAAAGAGAGCATGGAACTCGATTCGGCCGCCTTAGCCCA
AATCATAATGTGGGGCCTCGTCACCGGCTACTCTCTCCGCGAACTTGAAC
GGGGGGTAGGGGAAGGGGAGGAGATCGTCCACCAAGAGGGGGACCGGGAG
GGGGAGGGAGGAGTGGTAGTTGAGGGGGAGGGGGAAGGCCAGGAGGAGGA
GGAGGGGGTGGGTGGTCTGGATGCTAATGTAAAGGAAGTTGATGCAGCAA
TTTGA

Synonyms

Publications