jgi.p|Nanoce1779_2|580886, mRNA_2600 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580886
Unique NamemRNA_2600
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length569
Alignment locationscaffold_5:743831..744514 -

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Properties
Property NameValue
TranscriptId580972
TrackFilteredModels2
ProteinId580886
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:743831..744514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580886gene_2600Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580886mRNA_2600-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2600CDS_2600Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2600 ID=mRNA_2600|Name=jgi.p|Nanoce1779_2|580886|organism=Nannochloropsis oceanica|type=mRNA|length=569bp
TGCTGCTGCTGTTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGAGATGATTGCTGGCCTTTGCGAGGCTGTCGTG
GGTTCCGATGTTGGTCGCTTCCGTTGTCACCTTCACCGTCATCGTTGTTG
TTGCCATTTCCACCAAAGTGGAAGGGAGGGTCCAAGCCTCCGCTCAACTT
GCGGGTGAAGACCTTGAGCGTACTAGCCCGCACCGGGCGGTGGATTCCCA
CTCCAAGCACGGACGGCGGGGAGGAAGTGGAGGAAAGGACAGGGCTTGCC
GGGAGGAAGGCGAAGGTTCCTGGTACGAGGCAGCAACATCCCGCGACAGC
AACACATGAGAGCAGCCTGAATTCCCGATTTCGTCTTGACGACGACGACG
GGGTGGGTGGGAAAGTCATGGTCGATGTGGGGCGTCAGCTAGATAGTGGA
GCCGGTATGACGAGGTCACGGTTGAGGCTATGCTTGCGGCGGCCCACTTG
GTATGGCGTGCGAGGTTGCGAGAAATCAAATCCAAACAGTGAAAAAAGGC
TCAGAATCGCAAGTCCTGT
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protein sequence of jgi.p|Nanoce1779_2|580886

>mRNA_2600-protein ID=mRNA_2600-protein|Name=jgi.p|Nanoce1779_2|580886|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MLVASVVTFTVIVVVAISTKVEGRVQASAQLAGEDLERTSPHRAVDSHSK
HGRRGGSGGKDRACREEGEGSWYEAATSRDSNT*
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mRNA from alignment at scaffold_5:743831..744514-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2600 ID=mRNA_2600|Name=jgi.p|Nanoce1779_2|580886|organism=Nannochloropsis oceanica|type=mRNA|length=684bp|location=Sequence derived from alignment at scaffold_5:743831..744514- (Nannochloropsis oceanica)
TGCTGCTGCTGTTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGAGATGATTGCTGGCCTTTGCGAGGCTGTCGTG
GGTTCCGATGTTGGTCGCTTCCGTTGTCACCTTCACCGTCATCGTTGTTG
TTGCCATTTCCACCTACATATGCGTGTGTGTGATGTGGTAGATGGGTGAG
ATGCTGACATTGCCCAAGTACCCATTTTCTAGAAGGAAGACCGCTCTCCA
TCTCTTTCGTTTCTGTCTGTACATGTACCAAAGTGGAAGGGAGGGTCCAA
GCCTCCGCTCAACTTGCGGGTGAAGACCTTGAGCGTACTAGCCCGCACCG
GGCGGTGGATTCCCACTCCAAGCACGGACGGCGGGGAGGAAGTGGAGGAA
AGGACAGGGCTTGCCGGGAGGAAGGCGAAGGTTCCTGGTACGAGGCAGCA
ACATCCCGCGACAGCAACACATGAGAGCAGCCTGAATTCCCGATTTCGTC
TTGACGACGACGACGGGGTGGGTGGGAAAGTCATGGTCGATGTGGGGCGT
CAGCTAGATAGTGGAGCCGGTATGACGAGGTCACGGTTGAGGCTATGCTT
GCGGCGGCCCACTTGGTATGGCGTGCGAGGTTGCGAGAAATCAAATCCAA
ACAGTGAAAAAAGGCTCAGAATCGCAAGTCCTGT
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Coding sequence (CDS) from alignment at scaffold_5:743831..744514-

>mRNA_2600 ID=mRNA_2600|Name=jgi.p|Nanoce1779_2|580886|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_5:743831..744514- (Nannochloropsis oceanica)
CAAAGTGGAAGGGAGGGTCCAAGCCTCCGCTCAACTTGCGGGTGAAGACC
TTGAGCGTACTAGCCCGCACCGGGCGGTGGATTCCCACTCCAAGCACGGA
CGGCGGGGAGGAAGTGGAGGAAAGGACAGGGCTTGCCGGGAGGAAGGCGA
AGGTTCCTGGTACGAGGCAGCAACATCCCGCGACAGCAACACATGAATGT
TGGTCGCTTCCGTTGTCACCTTCACCGTCATCGTTGTTGTTGCCATTTCC
ACCAAAGTGGAAGGGAGGGTCCAAGCCTCCGCTCAACTTGCGGGTGAAGA
CCTTGAGCGTACTAGCCCGCACCGGGCGGTGGATTCCCACTCCAAGCACG
GACGGCGGGGAGGAAGTGGAGGAAAGGACAGGGCTTGCCGGGAGGAAGGC
GAAGGTTCCTGGTACGAGGCAGCAACATCCCGCGACAGCAACACATGAAT
GTTGGTCGCTTCCGTTGTCACCTTCACCGTCATCGTTGTTGTTGCCATTT
CCAC
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Synonyms
Publications