jgi.p|Nanoce1779_2|575943, mRNA_26 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575943
Unique NamemRNA_26
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length637
Alignment locationscaffold_3:78186..79201 +

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Properties
Property NameValue
TranscriptId576029
TrackFilteredModels2
ProteinId575943
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:78186..79201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575943gene_26Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575943mRNA_26-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_26CDS_26Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_26 ID=mRNA_26|Name=jgi.p|Nanoce1779_2|575943|organism=Nannochloropsis oceanica|type=mRNA|length=637bp
ACAGCAGCACTCAGCATGGCCGACGCGGAGCTCCGTCAACGCAAAGCAGC
CCCTGTGCCCGAGGACGTTGTCGTGGATGAAGGGGAGAGCGACGATGAGG
TTGAGTACGAGGGGGAGCCTGACGAGCATGAGATGAGCGCGTTGGACTAT
TTGCAGTCGCAGGGCTTGTCGTTAAAGTCACTCAAGGACCCGAGCAATGC
GAAGACAGGAGCCTCGTGCAACGGGAAGAGTGATGGGGGAGGAGGAGGGG
CGGATTCTGTAAACGTCAAGGCAGCGATCAAGGCAAGAAGAAAGAAGGCT
CAGGCGGAGGATGGGGAGAAGGCGGCGAAGAAGGAGGGGGGGATTAAGTG
GCTGCCATTGATATTTTTAATCTTCATGATGGGCCCCGCTTTGTTTACCG
CTGTAGACTATCTCTTCTCATTGCCCATGTTTGCCCGTTTTCATCGTAAG
CCGGACGTCAAAGAGTGCTTGATCAACTACTATCGCAAGGTGAGTCCCGA
GCGCCTCAACGAAGTGAATGTGGACGATGTCTTGCGCAAGTACAAGGGGC
GAGAAAGCACGATGATTCGAAACCTGGAGGGCAGGTATCGACGCAAATGG
CAGTGCCCTTAGGTGGTGGAGGAGGGGGAGGAAGGGG
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protein sequence of jgi.p|Nanoce1779_2|575943

>mRNA_26-protein ID=mRNA_26-protein|Name=jgi.p|Nanoce1779_2|575943|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MADAELRQRKAAPVPEDVVVDEGESDDEVEYEGEPDEHEMSALDYLQSQG
LSLKSLKDPSNAKTGASCNGKSDGGGGGADSVNVKAAIKARRKKAQAEDG
EKAAKKEGGIKWLPLIFLIFMMGPALFTAVDYLFSLPMFARFHRKPDVKE
CLINYYRKVSPERLNEVNVDDVLRKYKGRESTMIRNLEGRYRRKWQCP*
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mRNA from alignment at scaffold_3:78186..79201+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_26 ID=mRNA_26|Name=jgi.p|Nanoce1779_2|575943|organism=Nannochloropsis oceanica|type=mRNA|length=1016bp|location=Sequence derived from alignment at scaffold_3:78186..79201+ (Nannochloropsis oceanica)
ACAGCAGCACTCAGCATGGCCGACGCGGAGCTCCGTCAACGCAAAGCAGC
CCCTGTGCCCGAGGACGTTGTCGTGGATGAAGGGGAGAGCGACGATGAGG
TTGAGTACGAGGGGGAGCCTGACGAGCATGAGATGAGCGCGTTGGACTAT
TTGCAGTCGCAGGGCTTGTCGTTAAAGTCACTCAAGGACCCGAGCAATGC
GAAGACAGGAGCCTCGTGCAACGGGAAGAGTGATGGGGGAGGAGGAGGGG
CGGATTCTGTAAACGTCAAGGCAGCGATCAAGGCAAGAAGAAAGAAGGCT
CAGGCGGAGGATGGGGAGAAGGCGGCGAAGAAGGAGGGGGGGATTAAGTG
GCTGCCATTGATATTTTTAATCGTGAGTTGGATTTGGAGATGGTTAGATG
GATGTTTACAAAGGTGCAGGGAGGGAAGAAGGGTGGGAATGGTCGGCTAG
TTTAGTAGATTCATACTCATCTCTCCCTCCCTCCTTCCTTGCTTCCTTCC
TTCCTTCCTTTCTTCCTTGCTTCCTTCCTTCCTTCCCTCAGTTCATGATG
GGCCCCGCTTTGTTTACCGCTGTAGACTATCTCTTCTCATTGCCCATGTT
TGCCCGTTTTCATCGTAAGCCGGACGTCAAAGAGTGCTTGATCAACTACT
ATCGCAAGGTGGGGAGGGAGGGAGGGCGGGAGAGCGGGAGGGCTGGTGGG
AGGGTTCAGAGGGTTGATAGGGTCCTATTTACATGAGAGAGGCGTTCATC
TTGCAGGATAATCCAACTCGTAAACTGGGTCTTCATTCTTCTTGTTTCAG
GCAGAAGAGTTAGACTGATGCTGCCTTTCTTTCCTTTTTCCCTTCCTCCT
TCCCTTCCTCCTGAATAGGTGAGTCCCGAGCGCCTCAACGAAGTGAATGT
GGACGATGTCTTGCGCAAGTACAAGGGGCGAGAAAGCACGATGATTCGAA
ACCTGGAGGGCAGGTATCGACGCAAATGGCAGTGCCCTTAGGTGGTGGAG
GAGGGGGAGGAAGGGG
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Coding sequence (CDS) from alignment at scaffold_3:78186..79201+

>mRNA_26 ID=mRNA_26|Name=jgi.p|Nanoce1779_2|575943|organism=Nannochloropsis oceanica|type=CDS|length=1791bp|location=Sequence derived from alignment at scaffold_3:78186..79201+ (Nannochloropsis oceanica)
ATGGCCGACGCGGAGCTCCGTCAACGCAAAGCAGCCCCTGTGCCCGAGGA
CGTTGTCGTGGATGAAGGGGAGAGCGACGATGAGGTTGAGTACGAGGGGG
AGCCTGACGAGCATGAGATGAGCGCGTTGGACTATTTGCAGTCGCAGGGC
TTGTCGTTAAAGTCACTCAAGGACCCGAGCAATGCGAAGACAGGAGCCTC
GTGCAACGGGAAGAGTGATGGGGGAGGAGGAGGGGCGGATTCTGTAAACG
TCAAGGCAGCGATCAAGGCAAGAAGAAAGAAGGCTCAGGCGGAGGATGGG
GAGAAGGCGGCGAAGAAGGAGGGGGGGATTAAGTGGCTGCCATTGATATT
TTTAATCTTCATGATGGGCCCCGCTTTGTTTACCGCTGTAGACTATCTCT
TCTCATTGCCCATGTTTGCCCGTTTTCATCGTAAGCCGGACGTCAAAGAG
TGCTTGATCAACTACTATCGCAAGGTGAGTCCCGAGCGCCTCAACGAAGT
GAATGTGGACGATGTCTTGCGCAAGTACAAGGGGCGAGAAAGCACGATGA
TTCGAAACCTGGAGGGCAGGTATCGACGCAAATGGCAGTGCCCTTAGATG
GCCGACGCGGAGCTCCGTCAACGCAAAGCAGCCCCTGTGCCCGAGGACGT
TGTCGTGGATGAAGGGGAGAGCGACGATGAGGTTGAGTACGAGGGGGAGC
CTGACGAGCATGAGATGAGCGCGTTGGACTATTTGCAGTCGCAGGGCTTG
TCGTTAAAGTCACTCAAGGACCCGAGCAATGCGAAGACAGGAGCCTCGTG
CAACGGGAAGAGTGATGGGGGAGGAGGAGGGGCGGATTCTGTAAACGTCA
AGGCAGCGATCAAGGCAAGAAGAAAGAAGGCTCAGGCGGAGGATGGGGAG
AAGGCGGCGAAGAAGGAGGGGGGGATTAAGTGGCTGCCATTGATATTTTT
AATCTTCATGATGGGCCCCGCTTTGTTTACCGCTGTAGACTATCTCTTCT
CATTGCCCATGTTTGCCCGTTTTCATCGTAAGCCGGACGTCAAAGAGTGC
TTGATCAACTACTATCGCAAGGTGAGTCCCGAGCGCCTCAACGAAGTGAA
TGTGGACGATGTCTTGCGCAAGTACAAGGGGCGAGAAAGCACGATGATTC
GAAACCTGGAGGGCAGGTATCGACGCAAATGGCAGTGCCCTTAGATGGCC
GACGCGGAGCTCCGTCAACGCAAAGCAGCCCCTGTGCCCGAGGACGTTGT
CGTGGATGAAGGGGAGAGCGACGATGAGGTTGAGTACGAGGGGGAGCCTG
ACGAGCATGAGATGAGCGCGTTGGACTATTTGCAGTCGCAGGGCTTGTCG
TTAAAGTCACTCAAGGACCCGAGCAATGCGAAGACAGGAGCCTCGTGCAA
CGGGAAGAGTGATGGGGGAGGAGGAGGGGCGGATTCTGTAAACGTCAAGG
CAGCGATCAAGGCAAGAAGAAAGAAGGCTCAGGCGGAGGATGGGGAGAAG
GCGGCGAAGAAGGAGGGGGGGATTAAGTGGCTGCCATTGATATTTTTAAT
CTTCATGATGGGCCCCGCTTTGTTTACCGCTGTAGACTATCTCTTCTCAT
TGCCCATGTTTGCCCGTTTTCATCGTAAGCCGGACGTCAAAGAGTGCTTG
ATCAACTACTATCGCAAGGTGAGTCCCGAGCGCCTCAACGAAGTGAATGT
GGACGATGTCTTGCGCAAGTACAAGGGGCGAGAAAGCACGATGATTCGAA
ACCTGGAGGGCAGGTATCGACGCAAATGGCAGTGCCCTTAG
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Synonyms
Publications