jgi.p|Nanoce1779_2|580874, mRNA_2598 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580874
Unique NamemRNA_2598
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1191
Alignment locationscaffold_5:739382..740572 +

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Properties
Property NameValue
TranscriptId580960
TrackFilteredModels2
ProteinId580874
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:739382..740572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580874gene_2598Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580874mRNA_2598-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2598CDS_2598Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2598 ID=mRNA_2598|Name=jgi.p|Nanoce1779_2|580874|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp
ACAGAACAGTCGTTGCAGCTCGGCAAATGTCTCCGCGGTCATCCGTCGCC
TATTTTCGGGCCGCCGCCATCGCCGCCAAATCCCTCTGTCCCACACATCC
CACACACTTGTCCTCTCGAACACGAAACCTCCCCTCTCCATCTCATCGAC
CTCACCCCGGACCGCGGCCGTACTATCTCTCCTCTACCTCCACGTCCTCC
ACTGCCGCAGACCCTGCCAATTACGGCGAATACTGTGTTGAGCTGGTCAA
GCAGCACGATTTTGACGCCTATTTGTGTGGCCTCCTTGTGCCCACCCCCT
CCCGACGGGCCTTTTTTGCCCTCCGTGCGTTCAACGTTGAAACGGCGCTC
ATCAAGGACGTGGCCCGCGGCAATGCACTGCCGGGGCAAATGCGTATGCA
ATGGTGGCGGGAAGTCATCGGTGCTATCTACCAAGATAAATCCCCTGCGC
ACCCTGTCGCCCGTGCCTTGGCAGAAGCCGTACAAGCCCACAACCTCACC
CGGAGGTGGCTCGACCGTCTCCTCGAAGCTCGCCTCCAAGATCTAGATAA
CATCCAACCCACAACCATGGCCGATCTGGAGGACTACGCCGAGCACACTG
CCTCCTCCCTCCTCTACCTTACCCTTGAAAGCCTCGGCGTGCAGCACCAA
ACGGCGGATCACGCTGCAAGTCACGTAGGCAAAGCCACAGGCATCACCAC
CTTGCTACGTGCAACCAGATACCACGCCGCCCAACAGTCCCTCTACATCC
CTCTGGAGCTCCAAAGAGAATTTAAAGTGAACGTAAACGATATTCTGAGA
GGGCCTCAAAGCCCCGAGGCTGTCCAAGCCTTATCCGACGTATTTTTTGA
GGTAGCAACCCAGGCACATTTACACCTGGAGCACGCAAGAGAGTTGCTTT
CTTCTACCCCCTCTCCGGCGACGGGACCATTGCCAAAGGCAACGTTTACG
GCGTTACTACCGGCTGTGAGGACGACAATGTACCTGGAGGCGTTGCAGAA
AAGTGGGTTTGACGCTCTGGATGAGGGATTGTTGCCACGAAGTCATCTAG
GATTTCAAATGCGGTTGTGGTGGGCGAACTGGAGGCGGAAAATTTAGGGA
GGGAGGGCGGGAGGAAGGAGTGGTAAGATGAAAAGTCGTTGCCATTGACA
AGCCGGATTGTCAGGTACGCTTGTTTTGAGCGACAAAGAGG
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protein sequence of jgi.p|Nanoce1779_2|580874

>mRNA_2598-protein ID=mRNA_2598-protein|Name=jgi.p|Nanoce1779_2|580874|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MSPRSSVAYFRAAAIAAKSLCPTHPTHLSSRTRNLPSPSHRPHPGPRPYY
LSSTSTSSTAADPANYGEYCVELVKQHDFDAYLCGLLVPTPSRRAFFALR
AFNVETALIKDVARGNALPGQMRMQWWREVIGAIYQDKSPAHPVARALAE
AVQAHNLTRRWLDRLLEARLQDLDNIQPTTMADLEDYAEHTASSLLYLTL
ESLGVQHQTADHAASHVGKATGITTLLRATRYHAAQQSLYIPLELQREFK
VNVNDILRGPQSPEAVQALSDVFFEVATQAHLHLEHARELLSSTPSPATG
PLPKATFTALLPAVRTTMYLEALQKSGFDALDEGLLPRSHLGFQMRLWWA
NWRRKI*
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mRNA from alignment at scaffold_5:739382..740572+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2598 ID=mRNA_2598|Name=jgi.p|Nanoce1779_2|580874|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp|location=Sequence derived from alignment at scaffold_5:739382..740572+ (Nannochloropsis oceanica)
ACAGAACAGTCGTTGCAGCTCGGCAAATGTCTCCGCGGTCATCCGTCGCC
TATTTTCGGGCCGCCGCCATCGCCGCCAAATCCCTCTGTCCCACACATCC
CACACACTTGTCCTCTCGAACACGAAACCTCCCCTCTCCATCTCATCGAC
CTCACCCCGGACCGCGGCCGTACTATCTCTCCTCTACCTCCACGTCCTCC
ACTGCCGCAGACCCTGCCAATTACGGCGAATACTGTGTTGAGCTGGTCAA
GCAGCACGATTTTGACGCCTATTTGTGTGGCCTCCTTGTGCCCACCCCCT
CCCGACGGGCCTTTTTTGCCCTCCGTGCGTTCAACGTTGAAACGGCGCTC
ATCAAGGACGTGGCCCGCGGCAATGCACTGCCGGGGCAAATGCGTATGCA
ATGGTGGCGGGAAGTCATCGGTGCTATCTACCAAGATAAATCCCCTGCGC
ACCCTGTCGCCCGTGCCTTGGCAGAAGCCGTACAAGCCCACAACCTCACC
CGGAGGTGGCTCGACCGTCTCCTCGAAGCTCGCCTCCAAGATCTAGATAA
CATCCAACCCACAACCATGGCCGATCTGGAGGACTACGCCGAGCACACTG
CCTCCTCCCTCCTCTACCTTACCCTTGAAAGCCTCGGCGTGCAGCACCAA
ACGGCGGATCACGCTGCAAGTCACGTAGGCAAAGCCACAGGCATCACCAC
CTTGCTACGTGCAACCAGATACCACGCCGCCCAACAGTCCCTCTACATCC
CTCTGGAGCTCCAAAGAGAATTTAAAGTGAACGTAAACGATATTCTGAGA
GGGCCTCAAAGCCCCGAGGCTGTCCAAGCCTTATCCGACGTATTTTTTGA
GGTAGCAACCCAGGCACATTTACACCTGGAGCACGCAAGAGAGTTGCTTT
CTTCTACCCCCTCTCCGGCGACGGGACCATTGCCAAAGGCAACGTTTACG
GCGTTACTACCGGCTGTGAGGACGACAATGTACCTGGAGGCGTTGCAGAA
AAGTGGGTTTGACGCTCTGGATGAGGGATTGTTGCCACGAAGTCATCTAG
GATTTCAAATGCGGTTGTGGTGGGCGAACTGGAGGCGGAAAATTTAGGGA
GGGAGGGCGGGAGGAAGGAGTGGTAAGATGAAAAGTCGTTGCCATTGACA
AGCCGGATTGTCAGGTACGCTTGTTTTGAGCGACAAAGAGG
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Coding sequence (CDS) from alignment at scaffold_5:739382..740572+

>mRNA_2598 ID=mRNA_2598|Name=jgi.p|Nanoce1779_2|580874|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_5:739382..740572+ (Nannochloropsis oceanica)
ATGTCTCCGCGGTCATCCGTCGCCTATTTTCGGGCCGCCGCCATCGCCGC
CAAATCCCTCTGTCCCACACATCCCACACACTTGTCCTCTCGAACACGAA
ACCTCCCCTCTCCATCTCATCGACCTCACCCCGGACCGCGGCCGTACTAT
CTCTCCTCTACCTCCACGTCCTCCACTGCCGCAGACCCTGCCAATTACGG
CGAATACTGTGTTGAGCTGGTCAAGCAGCACGATTTTGACGCCTATTTGT
GTGGCCTCCTTGTGCCCACCCCCTCCCGACGGGCCTTTTTTGCCCTCCGT
GCGTTCAACGTTGAAACGGCGCTCATCAAGGACGTGGCCCGCGGCAATGC
ACTGCCGGGGCAAATGCGTATGCAATGGTGGCGGGAAGTCATCGGTGCTA
TCTACCAAGATAAATCCCCTGCGCACCCTGTCGCCCGTGCCTTGGCAGAA
GCCGTACAAGCCCACAACCTCACCCGGAGGTGGCTCGACCGTCTCCTCGA
AGCTCGCCTCCAAGATCTAGATAACATCCAACCCACAACCATGGCCGATC
TGGAGGACTACGCCGAGCACACTGCCTCCTCCCTCCTCTACCTTACCCTT
GAAAGCCTCGGCGTGCAGCACCAAACGGCGGATCACGCTGCAAGTCACGT
AGGCAAAGCCACAGGCATCACCACCTTGCTACGTGCAACCAGATACCACG
CCGCCCAACAGTCCCTCTACATCCCTCTGGAGCTCCAAAGAGAATTTAAA
GTGAACGTAAACGATATTCTGAGAGGGCCTCAAAGCCCCGAGGCTGTCCA
AGCCTTATCCGACGTATTTTTTGAGGTAGCAACCCAGGCACATTTACACC
TGGAGCACGCAAGAGAGTTGCTTTCTTCTACCCCCTCTCCGGCGACGGGA
CCATTGCCAAAGGCAACGTTTACGGCGTTACTACCGGCTGTGAGGACGAC
AATGTACCTGGAGGCGTTGCAGAAAAGTGGGTTTGACGCTCTGGATGAGG
GATTGTTGCCACGAAGTCATCTAGGATTTCAAATGCGGTTGTGGTGGGCG
AACTGGAGGCGGAAAATTTAG
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Synonyms
Publications