jgi.p|Nanoce1779_2|580866, mRNA_2597 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580866
Unique NamemRNA_2597
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1250
Alignment locationscaffold_5:735287..736858 -

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Properties
Property NameValue
TranscriptId580952
TrackFilteredModels2
ProteinId580866
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:735287..736858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580866gene_2597Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580866mRNA_2597-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2597CDS_2597Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2597 ID=mRNA_2597|Name=jgi.p|Nanoce1779_2|580866|organism=Nannochloropsis oceanica|type=mRNA|length=1250bp
GGCAGGATATGTAACGCCCAAACAAATCGCCATCGACAAGCGCGTGACCC
TCGCAATGGTATGAACAGCTAAATGTGAAATTTCCTATTGTCTGTTCCTA
TCCCCCTCCTATTTTCATTCTCCTTGCACTTTCTCCTCACCAGGCATCTC
TCGGCTCCATTGTCTTCATGAATCTGAGCTTGGCTCATAATTCTGTTGGC
TTTTACCAGCTCTCCAAGCTCGCATGTATCCCCGTCATTATTGTGGTTGA
ATATGCTCTATACGAAAGAATAGTGCCTCTCTCCAAGCTGCTGACGGTCA
CCGTCATCGTCTTTGGGGTTGGGGTGGCATCTGTAAGTGATGTGACAATC
AATTTCATTGGAGTGATTCTGGCCGCGGTGGCGGTTACTTTTACATCCAT
GGCACAAATACTTTGTTCGCACTACCAAAAGTACTTGGAATGTGATTCCA
TGCAGCTCTTACACAGTACCTGCCCCCTAGTGACGATCGGGATGCTGGTC
TTTATCCCCTTCTTCCACAACGTCCGCGAGCTTGGCCAGGCGGAGTTTTC
AGCACCCTTATTGACACACATCTTTTGGTCCTGTGTTTTGGCCTTGGGAG
TCAACATCACAAACTTTTTAATCTTGGGCAAAACCTCGCCCTTGGCATAC
CAGGTCCTCGGGCACCTCAAAGCCACAATTATTTTGATACTTGGGGTCGT
GGTATTCAATTATCAGTACAACGCGAAAGTCATTGCCGGCACTGTCCTGG
CATTAGGAGGAGTGGTGGCCTATACCGAACTGATTTGTAAATGCGTTTGG
GCAACTGCTGCTGCTGCTGCCGGCCCTGCTACCGTTTCGCTCCGGGTGCG
TGGTGCATGGCGATATTGTCGTGTGCGCCGCCGCATGCTACACTTGACAT
TGGATGCCAAAGAAACCATGAGGCCGATCAAAGAACACAAGGCGAACCCA
ATAATATTATTCGAAGGAAGCACACCCAAGAGGAAGGCCAAGACAGGAAA
AATAGCCCGGAAAGTGAGAAACACCTCACTCATTTCCTTCCTCCCCTTCT
CCTTCCCTTCCCAGGGACGCACGTCCTCCATGATTCAGCGCCTTGCACCA
GGGCGTCCTATTATTGGTTGAGTCCTTGTAACGGGATGGTAACTTGGTTT
TCTTTTCTCCAGCTGGGAAACGCGGCATCATACATTTCCTCCCCCTCGAA
TTCAGAAGCTCCGCAGGGGGATGCATCATCAACATTTACGCGGGCCCTCT
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protein sequence of jgi.p|Nanoce1779_2|580866

>mRNA_2597-protein ID=mRNA_2597-protein|Name=jgi.p|Nanoce1779_2|580866|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MNLSLAHNSVGFYQLSKLACIPVIIVVEYALYERIVPLSKLLTVTVIVFG
VGVASVSDVTINFIGVILAAVAVTFTSMAQILCSHYQKYLECDSMQLLHS
TCPLVTIGMLVFIPFFHNVRELGQAEFSAPLLTHIFWSCVLALGVNITNF
LILGKTSPLAYQVLGHLKATIILILGVVVFNYQYNAKVIAGTVLALGGVV
AYTELICKCVWATAAAAAGPATVSLRVRGAWRYCRVRRRMLHLTLDAKET
MRPIKEHKANPIILFEGSTPKRKAKTGKIARKVRNTSLISFLPFSFPSQG
RTSSMIQRLAPGRPIIG*
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mRNA from alignment at scaffold_5:735287..736858-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2597 ID=mRNA_2597|Name=jgi.p|Nanoce1779_2|580866|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp|location=Sequence derived from alignment at scaffold_5:735287..736858- (Nannochloropsis oceanica)
GGCAGGATATGTAACGCCCAAACAAATCGCCATCGACAAGCGCGTGACCC
TCGCAATGGTATGAACAGCTAAATGTGAAATTTCCTATTGTCTGTTCCTA
TCCCCCTCCTATTTTCATTCTCCTTGCACTTTCTCCTCACCAGGCATCTC
TCGGCTCCATTGTCTTCATGAATCTGAGCTTGGCTCATAATTCTGTTGGC
TTTTACCAGCTCTCCAAGCTCGCATGTATCCCCGTCATTATTGTGGTTGA
ATATGCTCTATACGAAAGAATAGTGCCTCTCTCCAAGCTGCTGACGGTCA
CCGTCATCGTCTTTGGGGTTGGGGTGGCATCTGTAAGTGATGTGACAATC
AATTTCATTGGAGTGATTCTGGCCGCGGTGGCGGTTACTTTTACATCCAT
GGCACAAATACTTTGTTCGCACTACCAAAAGTACTTGGAATGTGATTCCA
TGCAGCTCTTACACAGTACCTGCCCCCTAGTGACGATCGGGATGCTGGTC
TTTATCCCCTTCTTCCACAACGTCCGCGAGCTTGGCCAGGCGGAGTTTTC
AGCACCCTTATTGACACACATCTTTTGGTCCTGTGTTTTGGCCTTGGGAG
TCAACATCACAAACTTTTTAATCTTGGGCAAAACCTCGCCCTTGGCATAC
CAGGTCCTCGGGCACCTCAAAGCCACAATTATTTTGATACTTGGGGTCGT
GGTATTCAATTATCAGTACAACGCGAAAGTCATTGCCGGCACTGTCCTGG
CATTAGGAGGAGTGGTGGCCTATACCGAACTTGGAAGACAAAAAACTGTA
GGTTAGTGTTTGCGTTGTTTTGCCCTTTTCATGGGGCCAATACCGAGTAC
AAAAGACTTGATTTCATAAACCCCACTATATTCGCCCTGTGGCTCGACGG
TATCTCTGGGTGGATGCGCGGAGAGTAGCAGTGAAAAAATGAATGCTAAC
GCCATAAGCAGGCGGCTGGTACGCTTGTGCCCACCTCCATTTCTGCCTTG
AAACATGTGCTATCCTACCTCGCATTGGTATACTCCACCCACCCCACTGT
TCTACTACTCGCTTTGTTTAAATGTGCATGCACATGCAGGATAGTGCTTA
CCTGATTTGTAAATGCGTTTGGGCAACTGCTGCTGCTGCTGCCGGCCCTG
CTACCGTTTCGCTCCGGGTGCGTGGTGCATGGCGATATTGTCGTGTGCGC
CGCCGCATGCTACACTTGACATTGGATGCCAAAGAAACCATGAGGCCGAT
CAAAGAACACAAGGCGAACCCAATAATATTATTCGAAGGAAGCACACCCA
AGAGGAAGGCCAAGACAGGAAAAATAGCCCGGAAAGTGAGAAACACCTCA
CTCATTTCCTTCCTCCCCTTCTCCTTCCCTTCCCAGGGACGCACGTCCTC
CATGATTCAGCGCCTTGCACCAGGGCGTCCTATTATTGGTTGAGTCCTTG
TAACGGGATGGTAACTTGGTTTTCTTTTCTCCAGCTGGGAAACGCGGCAT
CATACATTTCCTCCCCCTCGAATTCAGAAGCTCCGCAGGGGGATGCATCA
TCAACATTTACGCGGGCCCTCT
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Coding sequence (CDS) from alignment at scaffold_5:735287..736858-

>mRNA_2597 ID=mRNA_2597|Name=jgi.p|Nanoce1779_2|580866|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at scaffold_5:735287..736858- (Nannochloropsis oceanica)
CTGATTTGTAAATGCGTTTGGGCAACTGCTGCTGCTGCTGCCGGCCCTGC
TACCGTTTCGCTCCGGGTGCGTGGTGCATGGCGATATTGTCGTGTGCGCC
GCCGCATGCTACACTTGACATTGGATGCCAAAGAAACCATGAGGCCGATC
AAAGAACACAAGGCGAACCCAATAATATTATTCGAAGGAAGCACACCCAA
GAGGAAGGCCAAGACAGGAAAAATAGCCCGGAAAGTGAGAAACACCTCAC
TCATTTCCTTCCTCCCCTTCTCCTTCCCTTCCCAGGGACGCACGTCCTCC
ATGATTCAGCGCCTTGCACCAGGGCGTCCTATTATTGGTTGAATGAATCT
GAGCTTGGCTCATAATTCTGTTGGCTTTTACCAGCTCTCCAAGCTCGCAT
GTATCCCCGTCATTATTGTGGTTGAATATGCTCTATACGAAAGAATAGTG
CCTCTCTCCAAGCTGCTGACGGTCACCGTCATCGTCTTTGGGGTTGGGGT
GGCATCTGTAAGTGATGTGACAATCAATTTCATTGGAGTGATTCTGGCCG
CGGTGGCGGTTACTTTTACATCCATGGCACAAATACTTTGTTCGCACTAC
CAAAAGTACTTGGAATGTGATTCCATGCAGCTCTTACACAGTACCTGCCC
CCTAGTGACGATCGGGATGCTGGTCTTTATCCCCTTCTTCCACAACGTCC
GCGAGCTTGGCCAGGCGGAGTTTTCAGCACCCTTATTGACACACATCTTT
TGGTCCTGTGTTTTGGCCTTGGGAGTCAACATCACAAACTTTTTAATCTT
GGGCAAAACCTCGCCCTTGGCATACCAGGTCCTCGGGCACCTCAAAGCCA
CAATTATTTTGATACTTGGGGTCGTGGTATTCAATTATCAGTACAACGCG
AAAGTCATTGCCGGCACTGTCCTGGCATTAGGAGGAGTGGTGGCCTATAC
CGAACTGATTTGTAAATGCGTTTGGGCAACTGCTGCTGCTGCTGCCGGCC
CTGCTACCGTTTCGCTCCGGGTGCGTGGTGCATGGCGATATTGTCGTGTG
CGCCGCCGCATGCTACACTTGACATTGGATGCCAAAGAAACCATGAGGCC
GATCAAAGAACACAAGGCGAACCCAATAATATTATTCGAAGGAAGCACAC
CCAAGAGGAAGGCCAAGACAGGAAAAATAGCCCGGAAAGTGAGAAACACC
TCACTCATTTCCTTCCTCCCCTTCTCCTTCCCTTCCCAGGGACGCACGTC
CTCCATGATTCAGCGCCTTGCACCAGGGCGTCCTATTATTGGTTGAATGA
ATCTGAGCTTGGCTCATAATTCTGTTGGCTTTTACCAGCTCTCCAAGCTC
GCATGTATCCCCGTCATTATTGTGGTTGAATATGCTCTATACGAAAGAAT
AGTGCCTCTCTCCAAGCTGCTGACGGTCACCGTCATCGTCTTTGGGGTTG
GGGTGGCATCTGTAAGTGATGTGACAATCAATTTCATTGGAGTGATTCTG
GCCGCGGTGGCGGTTACTTTTACATCCATGGCACAAATACTTTGTTCGCA
CTACCAAAAGTACTTGGAATGTGATTCCATGCAGCTCTTACACAGTACCT
GCCCCCTAGTGACGATCGGGATGCTGGTCTTTATCCCCTTCTTCCACAAC
GTCCGCGAGCTTGGCCAGGCGGAGTTTTCAGCACCCTTATTGACACACAT
CTTTTGGTCCTGTGTTTTGGCCTTGGGAGTCAACATCACAAACTTTTTAA
TCTTGGGCAAAACCTCGCCCTTGGCATACCAGGTCCTCGGGCACCTCAAA
GCCACAATTATTTTGATACTTGGGGTCGTGGTATTCAATTATCAGTACAA
CGCGAAAGTCATTGCCGGCACTGTCCTGGCATTAGGAGGAGTGGTGGCCT
ATACCGAA
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Synonyms
Publications