jgi.p|Nanoce1779_2|580863, mRNA_2596 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580863
Unique Name	mRNA_2596
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1834
Alignment location	scaffold_5:733478..735311 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580949
Track	FilteredModels2
ProteinId	580863

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:733478..735311 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580863	gene_2596	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580863	mRNA_2596-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2596	CDS_2596	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:733478..735311+
coding sequence from alignment at scaffold_5:733478..735311+

mRNA sequence

>mRNA_2596 ID=mRNA_2596|Name=jgi.p|Nanoce1779_2|580863|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp
TACTCCTCCGCCAACACATCCTGCATCTTAACCCCTTCCCTTTCTCCCTC
CCTCCCTCCCCCAAAAAAGAAAAAGTTCAAACATTCCTCTGGAAAAAGGT
CAAAATGCGCCACAAACTCCTGGTAGCTAGCCGCCGTCCGTGGAAAGGGC
GAGAAGCACCCATGCCACACCGCCCCAAAATCAATGAAACGCATTATCTC
CGGTATGGGCAAGAGCCCCCGGACGGGGTAGACCATCACCCCCACCTCCG
ATGTCAGGTCAAACATGCTCTCCCCCAAGTCTTCAATCGTTGCCTCCAGC
ATCCCTCCTGCTGCCTCTTCTCCTCCTCCTCCTCCTCCTGACGACGGGGG
TACGCGCATTCGAAACGGGACTTGGTGAAAAACCTCACTCTCCCCCTCAT
CCTTCTTATCCTCCTTGCATAGCAAAGCCAGGGCATTCTCAACCGAAGCG
TAATTTTCTGCTTTCCCCGCTGGGACATCCACAGTTGTGCCGTTAAGGAC
CACGCTCCGAAAGGCTGCTCCCTTTCCCTTGGCGATTTGCCGGGCGGGCC
TGATGAAGACGTTGAAGTTATTTACTTTCTTGCTGAGGGCGTAGGTGCCC
CGGAGGGTAAGGTGGAGGGGCGCCATGCTATTGGGGAGGACGAGGAGGGC
CTTCGGTTCAGGTAAGACGCGGAAGGGGCTTAGCTTGGCGACGAGCTCAT
CGAGTTCATCTGGGTCGGTGCGGAAGCGCGAACCAGTCGCCTTGGGGTTG
TTACGGACAGCGTCGTAGTTCCCTTCATCGTGAATGTAGACCTGGTAGAA
GTGATGGAGAAGGCCCGAGGCGGGTTTGAAATTCTTTAGGTTTTGGGTGT
TGGGTTTGTAGAAGATGTTTCCCATCTCGTCCGTTTCTTGTTCCCACCAG
TAGTCGACGCCTTGAAGGCGGAGATCCTGCAGAAGGTCGGCTTTGTCATC
TTTCATGTGGTGCCAGATTTGTTCGAAGTCAGGGATGCAGGCCAGCTTGC
TCTTGAGCGCATATGCCTTCATGGTGTCCCAGAACAAGTCCTTGCGGATG
CGGAGTTGTTTGGCGTACTCTTCTTTGACGACAGTGGCGGGTTTGTTGCC
TGACTCGTTCTTACACATCCAGACTTCCACGAGGGCGCTGCGATCGTCAC
GTTTCTTGTTCGCTCGACCGGCTCGTTGTTGTAGCTGGCTAGCCCGGCTG
TTGCTCCCTGCGCTTGTAGAATTGAAGGAGCCTGTGTCGTTACCGATAAC
GCCGGAGTCCTCAAAGTCCCCTAGCTTTTGCACCGGCTTGCGTGCCCGCT
TGCCCGACATGGTGGGCATGGGGCTGCAGCTGCGTCTACTTGGGCTGCTG
CAACGTACTAGGGGGAAAGGAGGCGGGCGGGGAAGAGGGCAGCCGCCACG
GTCTATATGTAGTTGCAATGGGCTGGGTGGGTGTTGTAACCGGTGGTCTT
GTGGGATTAGTGGGTCGATTGACCTGAGGGTGTTTAGAAAAGGGAGGAGG
CTCGCAAGTAAGGGTGCCGCGTGCAACATTGAACAAGGGTCGGGAGGTAA
AAAGCAGGCAGCCGAGTTTGTGGTCCTCAGTGCAAAAGGTACTCCAGCAA
AGCACTAAATGGGAAAGGCAAAAGGATGTAGGCGGGCTTGCTGGGGGTAG
GAGGGGGGTGGGGGTCGTGTTGCCGGCGTCAGAAGAGCCTGCATTTGAGG
AGAGGTTGCCGTGCTTGCTTTACCACCCTGAGCTACGCCGAAACTTGGCC
CACAAGGGGCACAAAAGTTATGCGACAGGACAGGGACGGGCGGGGGGGTT
AGGGCACACAGAGGGCCCGCGTAAATGTTGATGA

protein sequence of jgi.p|Nanoce1779_2|580863

>mRNA_2596-protein ID=mRNA_2596-protein|Name=jgi.p|Nanoce1779_2|580863|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MWCQICSKSGMQASLLLSAYAFMVSQNKSLRMRSCLAYSSLTTVAGLLPD
SFLHIQTSTRALRSSRFLFARPARCCSWLARLLLPALVELKEPVSLPITP
ESSKSPSFCTGLRARLPDMVGMGLQLRLLGLLQRTRGKGGGRGRGQPPRS
ICSCNGLGGCCNRWSCGISGSIDLRVFRKGRRLASKGAACNIEQGSGGKK
QAAEFVVLSAKGTPAKH*

mRNA from alignment at scaffold_5:733478..735311+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2596 ID=mRNA_2596|Name=jgi.p|Nanoce1779_2|580863|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp|location=Sequence derived from alignment at scaffold_5:733478..735311+ (Nannochloropsis oceanica)
TACTCCTCCGCCAACACATCCTGCATCTTAACCCCTTCCCTTTCTCCCTC
CCTCCCTCCCCCAAAAAAGAAAAAGTTCAAACATTCCTCTGGAAAAAGGT
CAAAATGCGCCACAAACTCCTGGTAGCTAGCCGCCGTCCGTGGAAAGGGC
GAGAAGCACCCATGCCACACCGCCCCAAAATCAATGAAACGCATTATCTC
CGGTATGGGCAAGAGCCCCCGGACGGGGTAGACCATCACCCCCACCTCCG
ATGTCAGGTCAAACATGCTCTCCCCCAAGTCTTCAATCGTTGCCTCCAGC
ATCCCTCCTGCTGCCTCTTCTCCTCCTCCTCCTCCTCCTGACGACGGGGG
TACGCGCATTCGAAACGGGACTTGGTGAAAAACCTCACTCTCCCCCTCAT
CCTTCTTATCCTCCTTGCATAGCAAAGCCAGGGCATTCTCAACCGAAGCG
TAATTTTCTGCTTTCCCCGCTGGGACATCCACAGTTGTGCCGTTAAGGAC
CACGCTCCGAAAGGCTGCTCCCTTTCCCTTGGCGATTTGCCGGGCGGGCC
TGATGAAGACGTTGAAGTTATTTACTTTCTTGCTGAGGGCGTAGGTGCCC
CGGAGGGTAAGGTGGAGGGGCGCCATGCTATTGGGGAGGACGAGGAGGGC
CTTCGGTTCAGGTAAGACGCGGAAGGGGCTTAGCTTGGCGACGAGCTCAT
CGAGTTCATCTGGGTCGGTGCGGAAGCGCGAACCAGTCGCCTTGGGGTTG
TTACGGACAGCGTCGTAGTTCCCTTCATCGTGAATGTAGACCTGGTAGAA
GTGATGGAGAAGGCCCGAGGCGGGTTTGAAATTCTTTAGGTTTTGGGTGT
TGGGTTTGTAGAAGATGTTTCCCATCTCGTCCGTTTCTTGTTCCCACCAG
TAGTCGACGCCTTGAAGGCGGAGATCCTGCAGAAGGTCGGCTTTGTCATC
TTTCATGTGGTGCCAGATTTGTTCGAAGTCAGGGATGCAGGCCAGCTTGC
TCTTGAGCGCATATGCCTTCATGGTGTCCCAGAACAAGTCCTTGCGGATG
CGGAGTTGTTTGGCGTACTCTTCTTTGACGACAGTGGCGGGTTTGTTGCC
TGACTCGTTCTTACACATCCAGACTTCCACGAGGGCGCTGCGATCGTCAC
GTTTCTTGTTCGCTCGACCGGCTCGTTGTTGTAGCTGGCTAGCCCGGCTG
TTGCTCCCTGCGCTTGTAGAATTGAAGGAGCCTGTGTCGTTACCGATAAC
GCCGGAGTCCTCAAAGTCCCCTAGCTTTTGCACCGGCTTGCGTGCCCGCT
TGCCCGACATGGTGGGCATGGGGCTGCAGCTGCGTCTACTTGGGCTGCTG
CAACGTACTAGGGGGAAAGGAGGCGGGCGGGGAAGAGGGCAGCCGCCACG
GTCTATATGTAGTTGCAATGGGCTGGGTGGGTGTTGTAACCGGTGGTCTT
GTGGGATTAGTGGGTCGATTGACCTGAGGGTGTTTAGAAAAGGGAGGAGG
CTCGCAAGTAAGGGTGCCGCGTGCAACATTGAACAAGGGTCGGGAGGTAA
AAAGCAGGCAGCCGAGTTTGTGGTCCTCAGTGCAAAAGGTACTCCAGCAA
AGCACTAAATGGGAAAGGCAAAAGGATGTAGGCGGGCTTGCTGGGGGTAG
GAGGGGGGTGGGGGTCGTGTTGCCGGCGTCAGAAGAGCCTGCATTTGAGG
AGAGGTTGCCGTGCTTGCTTTACCACCCTGAGCTACGCCGAAACTTGGCC
CACAAGGGGCACAAAAGTTATGCGACAGGACAGGGACGGGCGGGGGGGTT
AGGGCACACAGAGGGCCCGCGTAAATGTTGATGA

Coding sequence (CDS) from alignment at scaffold_5:733478..735311+

>mRNA_2596 ID=mRNA_2596|Name=jgi.p|Nanoce1779_2|580863|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_5:733478..735311+ (Nannochloropsis oceanica)
ATGTGGTGCCAGATTTGTTCGAAGTCAGGGATGCAGGCCAGCTTGCTCTT
GAGCGCATATGCCTTCATGGTGTCCCAGAACAAGTCCTTGCGGATGCGGA
GTTGTTTGGCGTACTCTTCTTTGACGACAGTGGCGGGTTTGTTGCCTGAC
TCGTTCTTACACATCCAGACTTCCACGAGGGCGCTGCGATCGTCACGTTT
CTTGTTCGCTCGACCGGCTCGTTGTTGTAGCTGGCTAGCCCGGCTGTTGC
TCCCTGCGCTTGTAGAATTGAAGGAGCCTGTGTCGTTACCGATAACGCCG
GAGTCCTCAAAGTCCCCTAGCTTTTGCACCGGCTTGCGTGCCCGCTTGCC
CGACATGGTGGGCATGGGGCTGCAGCTGCGTCTACTTGGGCTGCTGCAAC
GTACTAGGGGGAAAGGAGGCGGGCGGGGAAGAGGGCAGCCGCCACGGTCT
ATATGTAGTTGCAATGGGCTGGGTGGGTGTTGTAACCGGTGGTCTTGTGG
GATTAGTGGGTCGATTGACCTGAGGGTGTTTAGAAAAGGGAGGAGGCTCG
CAAGTAAGGGTGCCGCGTGCAACATTGAACAAGGGTCGGGAGGTAAAAAG
CAGGCAGCCGAGTTTGTGGTCCTCAGTGCAAAAGGTACTCCAGCAAAGCA
CTAA

Synonyms

Publications