jgi.p|Nanoce1779_2|580857, mRNA_2595 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580857
Unique Name	mRNA_2595
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1729
Alignment location	scaffold_5:729565..731479 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580943
Track	FilteredModels2
ProteinId	580857

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:729565..731479 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580857	gene_2595	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580857	mRNA_2595-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2595	CDS_2595	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:729565..731479+
coding sequence from alignment at scaffold_5:729565..731479+

mRNA sequence

>mRNA_2595 ID=mRNA_2595|Name=jgi.p|Nanoce1779_2|580857|organism=Nannochloropsis oceanica|type=mRNA|length=1729bp
AGGAGAGACAAGAAAGGCAGCGAGGGAGGGTCAGTAGACGACGATGGCGA
ATCGAGGGACGACTCTGTAGGGCATTACCAGGGGAAGCCCGGCGATGTTA
TCCAGGGAAGATACGTGGTAGAGAAGGACGTGGGAATGGGTACCTTTGGA
CGGGTGGTGCAGTGTCTGGATAGAAAGAGGGGGAGGAAGGTCGCGCTTAA
GGTGGTGAGGAACATCAAACGATACACGGAATCAGCTCAGATTGAGGCGG
ATATTTTGGTCGATGTGAATAGTAGAGGGGGGAGGGGCATGACGCATTGT
GTACAGCTGTTCCGAGATTTTGTGTTTGAGGAACACTGCTGCCTCGTCTT
CGAGCGTCTCGGCGTGTCACTGTACGATTTTCTTAAGGCGCACAACTACC
GCCCGTACCCCCTCTACCCCCATGTGCGTGACTTTGCGAGGCAGTTGCTA
GAGAGCCTTGAATTCTTGCATGGCATGCAATTAATCCACACGGACCTGAA
ACCCGAAAATATTCTATTGTGTGACAACGCCGTCGTCGCCAAGGGAGGGG
AGGTGGCAAGGGAGGGGGGGACGGAGGAAGGGAGGAGCAAGAAGAGGGTG
ATGGAGGTCCCGGCTTCGACGCAGGTGAAAGTGATCGATTTTGGGGGGGC
GACGTATGATGACGACGCGAGAAAGAGTACGACTATCAACACGCGGCAGT
ATCGCGGGCCTGAAGTCATCTTGGAGGTAGGGTGGAGTTACCCTTCTGAT
TTGTGGTCGGCTGGGTGCATTATCGCGGAGCTGTATACGGGCGATGTTCT
GTTTGCGACGCATAACAATTTGGAGCATTTGGCATTGATTGAACGGTGCT
TGGGCCCTTTCCCGCGAGAGATGTTAGTCAAGAGTCCCAAGGGCGTGGCG
GACAAGTTTTTTTATTTGACCTCGACGGATAGGAAGGATGGGGGCTGGGG
TAGATGCAGGTGGAGGGAAGAATTGGATGCATCGAGTCAGAGGCACGTGA
GGCGGATGCCGTGGTTGGAGGAGGTGTTCGAGAGGGATAGGGATTCCGGG
ATTATTGAGCTGGTGAGGGGTTTGGTGGAGATCGACCCCCGCGAGCGCTT
GACGGCGACGCAGGCTTTGGCATTGCCATTTTTTAGGGATACAACACCAG
CGGCGATGGAGTGAGAAGAGGGGTATTTGAAATGAACGGTAGAGAGAAGT
GTGTATAGATTAGCGTGAGGGCAGATGCAGAAGGGAGGGACACGAAGGAA
TAGGAGAAAAGGTGTGGCTATCCTACCTGAATCACCAATAATGTAGACAG
TTTATATCTGTTCAAGCCGTCGATTTTTGTCGTGGAGGTGGATGATTGAA
TTGAATGATGATGGAATTGAAAGGAAAGAATATAAGGATTCATACCGAGC
TCACAGCTACTGAAGCATTTAATCTGAGTTGTGGCTTCCTTTTCTTGAGT
TTGTGTTCTCCTCCGACAGTCGCCTCGTTCGTGTGCTGCTGGTAGTTGCG
TTCCGCTTCGTGCGTATGTATGCCCCTACCGGGCCCTTAATGATTTTCTG
GAATGTTTTGATTCTCCGCGGTCTCCTAGATTATTCTGTCATTCCATCCT
TTCACCTCGCCCTGACCAGTTACGTTGCAACAGTGTACACATGTGCCTAA
CATAAATAGTTATGTAAACAGTACAGCATAGCCCACTCAGCACGCTGAGC
TGGAAGTATGCAGGAAATAATGTACCTGT

protein sequence of jgi.p|Nanoce1779_2|580857

>mRNA_2595-protein ID=mRNA_2595-protein|Name=jgi.p|Nanoce1779_2|580857|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MGTFGRVVQCLDRKRGRKVALKVVRNIKRYTESAQIEADILVDVNSRGGR
GMTHCVQLFRDFVFEEHCCLVFERLGVSLYDFLKAHNYRPYPLYPHVRDF
ARQLLESLEFLHGMQLIHTDLKPENILLCDNAVVAKGGEVAREGGTEEGR
SKKRVMEVPASTQVKVIDFGGATYDDDARKSTTINTRQYRGPEVILEVGW
SYPSDLWSAGCIIAELYTGDVLFATHNNLEHLALIERCLGPFPREMLVKS
PKGVADKFFYLTSTDRKDGGWGRCRWREELDASSQRHVRRMPWLEEVFER
DRDSGIIELVRGLVEIDPRERLTATQALALPFFRDTTPAAME*

mRNA from alignment at scaffold_5:729565..731479+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2595 ID=mRNA_2595|Name=jgi.p|Nanoce1779_2|580857|organism=Nannochloropsis oceanica|type=mRNA|length=1915bp|location=Sequence derived from alignment at scaffold_5:729565..731479+ (Nannochloropsis oceanica)
AGGAGAGACAAGAAAGGCAGCGAGGGAGGGTCAGTAGACGACGATGGCGA
ATCGAGGGACGACTCTGTAGGGCATTACCAGGGGAAGCCCGGCGATGTTA
TCCAGGGAAGATACGTGGTAGAGAAGGACGTGGGAATGGGTACCTTTGGA
CGGGTGGTGCAGTGTCTGGATAGAAAGAGGGGGAGGAAGGTCGCGCTTAA
GGTGGTGAGGAACATCAAACGATACACGGAATCAGCTCAGATTGAGGCGG
ATATTTTGGTCGATGTGAATAGTAGAGGGGGGAGGGGCATGACGCATTGT
GTACAGCTGTTCCGAGATTTTGTGTTTGAGGTAGGGGTGGAGGGGGGGGG
AGGGAGGGGAGGGGAGGGGAGGGGAGGATAGGGTATTATGTTTGCTGGCA
TTTCAACTACCCATTAGCTACACCTATCTTATAGATGTGGTCTTTCAATG
TTGGGAGGACTGGGCACTCATCCCTTCTTCCTCCCTCCCTCCCTACCCTC
GGCCCACTTTTAACAGGAACACTGCTGCCTCGTCTTCGAGCGTCTCGGCG
TGTCACTGTACGATTTTCTTAAGGCGCACAACTACCGCCCGTACCCCCTC
TACCCCCATGTGCGTGACTTTGCGAGGCAGTTGCTAGAGAGCCTTGAATT
CTTGCATGGCATGCAATTAATCCACACGGACCTGAAACCCGAAAATATTC
TATTGTGTGACAACGCCGTCGTCGCCAAGGGAGGGGAGGTGGCAAGGGAG
GGGGGGACGGAGGAAGGGAGGAGCAAGAAGAGGGTGATGGAGGTCCCGGC
TTCGACGCAGGTGAAAGTGATCGATTTTGGGGGGGCGACGTATGATGACG
ACGCGAGAAAGAGTACGACTATCAACACGCGGCAGTATCGCGGGCCTGAA
GTCATCTTGGAGGTAGGGTGGAGTTACCCTTCTGATTTGTGGTCGGCTGG
GTGCATTATCGCGGAGCTGTATACGGGCGATGTTCTGTTTGCGACGCATA
ACAATTTGGAGCATTTGGCATTGATTGAACGGTGCTTGGGCCCTTTCCCG
CGAGAGATGTTAGTCAAGAGTCCCAAGGGCGTGGCGGACAAGTTTTTTTA
TTTGACCTCGACGGATAGGAAGGATGGGGGCTGGGGTAGATGCAGGTGGA
GGGAAGAATTGGATGCATCGAGTCAGAGGCACGTGAGGCGGATGCCGTGG
TTGGAGGAGGTGTTCGAGAGGGATAGGGATTCCGGGATTATTGAGCTGGT
GAGGGGTTTGGTGGAGATCGACCCCCGCGAGCGCTTGACGGCGACGCAGG
CTTTGGCATTGCCATTTTTTAGGGATACAACACCAGCGGCGATGGAGTGA
GAAGAGGGGTATTTGAAATGAACGGTAGAGAGAAGTGTGTATAGATTAGC
GTGAGGGCAGATGCAGAAGGGAGGGACACGAAGGAATAGGAGAAAAGGTG
TGGCTATCCTACCTGAATCACCAATAATGTAGACAGTTTATATCTGTTCA
AGCCGTCGATTTTTGTCGTGGAGGTGGATGATTGAATTGAATGATGATGG
AATTGAAAGGAAAGAATATAAGGATTCATACCGAGCTCACAGCTACTGAA
GCATTTAATCTGAGTTGTGGCTTCCTTTTCTTGAGTTTGTGTTCTCCTCC
GACAGTCGCCTCGTTCGTGTGCTGCTGGTAGTTGCGTTCCGCTTCGTGCG
TATGTATGCCCCTACCGGGCCCTTAATGATTTTCTGGAATGTTTTGATTC
TCCGCGGTCTCCTAGATTATTCTGTCATTCCATCCTTTCACCTCGCCCTG
ACCAGTTACGTTGCAACAGTGTACACATGTGCCTAACATAAATAGTTATG
TAAACAGTACAGCATAGCCCACTCAGCACGCTGAGCTGGAAGTATGCAGG
AAATAATGTACCTGT

Coding sequence (CDS) from alignment at scaffold_5:729565..731479+

>mRNA_2595 ID=mRNA_2595|Name=jgi.p|Nanoce1779_2|580857|organism=Nannochloropsis oceanica|type=CDS|length=2058bp|location=Sequence derived from alignment at scaffold_5:729565..731479+ (Nannochloropsis oceanica)
ATGGGTACCTTTGGACGGGTGGTGCAGTGTCTGGATAGAAAGAGGGGGAG
GAAGGTCGCGCTTAAGGTGGTGAGGAACATCAAACGATACACGGAATCAG
CTCAGATTGAGGCGGATATTTTGGTCGATGTGAATAGTAGAGGGGGGAGG
GGCATGACGCATTGTGTACAGCTGTTCCGAGATTTTGTGTTTGAGGAACA
CTGCTGCCTCGTCTTCGAGCGTCTCGGCGTGTCACTGTACGATTTTCTTA
AGGCGCACAACTACCGCCCGTACCCCCTCTACCCCCATGTGCGTGACTTT
GCGAGGCAGTTGCTAGAGAGCCTTGAATTCTTGCATGGCATGCAATTAAT
CCACACGGACCTGAAACCCGAAAATATTCTATTGTGTGACAACGCCGTCG
TCGCCAAGGGAGGGGAGGTGGCAAGGGAGGGGGGGACGGAGGAAGGGAGG
AGCAAGAAGAGGGTGATGGAGGTCCCGGCTTCGACGCAGGTGAAAGTGAT
CGATTTTGGGGGGGCGACGTATGATGACGACGCGAGAAAGAGTACGACTA
TCAACACGCGGCAGTATCGCGGGCCTGAAGTCATCTTGGAGGTAGGGTGG
AGTTACCCTTCTGATTTGTGGTCGGCTGGGTGCATTATCGCGGAGCTGTA
TACGGGCGATGTTCTGTTTGCGACGCATAACAATTTGGAGCATTTGGCAT
TGATTGAACGGTGCTTGGGCCCTTTCCCGCGAGAGATGTTAGTCAAGAGT
CCCAAGGGCGTGGCGGACAAGTTTTTTTATTTGACCTCGACGGATAGGAA
GGATGGGGGCTGGGGTAGATGCAGGTGGAGGGAAGAATTGGATGCATCGA
GTCAGAGGCACGTGAGGCGGATGCCGTGGTTGGAGGAGGTGTTCGAGAGG
GATAGGGATTCCGGGATTATTGAGCTGGTGAGGGGTTTGGTGGAGATCGA
CCCCCGCGAGCGCTTGACGGCGACGCAGGCTTTGGCATTGCCATTTTTTA
GGGATACAACACCAGCGGCGATGGAGTGAATGGGTACCTTTGGACGGGTG
GTGCAGTGTCTGGATAGAAAGAGGGGGAGGAAGGTCGCGCTTAAGGTGGT
GAGGAACATCAAACGATACACGGAATCAGCTCAGATTGAGGCGGATATTT
TGGTCGATGTGAATAGTAGAGGGGGGAGGGGCATGACGCATTGTGTACAG
CTGTTCCGAGATTTTGTGTTTGAGGAACACTGCTGCCTCGTCTTCGAGCG
TCTCGGCGTGTCACTGTACGATTTTCTTAAGGCGCACAACTACCGCCCGT
ACCCCCTCTACCCCCATGTGCGTGACTTTGCGAGGCAGTTGCTAGAGAGC
CTTGAATTCTTGCATGGCATGCAATTAATCCACACGGACCTGAAACCCGA
AAATATTCTATTGTGTGACAACGCCGTCGTCGCCAAGGGAGGGGAGGTGG
CAAGGGAGGGGGGGACGGAGGAAGGGAGGAGCAAGAAGAGGGTGATGGAG
GTCCCGGCTTCGACGCAGGTGAAAGTGATCGATTTTGGGGGGGCGACGTA
TGATGACGACGCGAGAAAGAGTACGACTATCAACACGCGGCAGTATCGCG
GGCCTGAAGTCATCTTGGAGGTAGGGTGGAGTTACCCTTCTGATTTGTGG
TCGGCTGGGTGCATTATCGCGGAGCTGTATACGGGCGATGTTCTGTTTGC
GACGCATAACAATTTGGAGCATTTGGCATTGATTGAACGGTGCTTGGGCC
CTTTCCCGCGAGAGATGTTAGTCAAGAGTCCCAAGGGCGTGGCGGACAAG
TTTTTTTATTTGACCTCGACGGATAGGAAGGATGGGGGCTGGGGTAGATG
CAGGTGGAGGGAAGAATTGGATGCATCGAGTCAGAGGCACGTGAGGCGGA
TGCCGTGGTTGGAGGAGGTGTTCGAGAGGGATAGGGATTCCGGGATTATT
GAGCTGGTGAGGGGTTTGGTGGAGATCGACCCCCGCGAGCGCTTGACGGC
GACGCAGGCTTTGGCATTGCCATTTTTTAGGGATACAACACCAGCGGCGA
TGGAGTGA

Synonyms

Publications