jgi.p|Nanoce1779_2|580853, mRNA_2593 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580853
Unique Name	mRNA_2593
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1047
Alignment location	scaffold_5:723145..724191 -

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Properties


Property Name	Value
TranscriptId	580939
Track	FilteredModels2
ProteinId	580853

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:723145..724191 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580853	gene_2593	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580853	mRNA_2593-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2593	CDS_2593	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:723145..724191-
coding sequence from alignment at scaffold_5:723145..724191-

mRNA sequence

>mRNA_2593 ID=mRNA_2593|Name=jgi.p|Nanoce1779_2|580853|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp
AGTCAAGCAAAAAGGGGGCAGGGAGAAAGAGTGGGGAGATCTTATCGGAG
GGGGAGGAGGAGGAAGGGAGCGACGGGGGGGAGGGAAGGAAGCGGCCTAA
AAAGCATGTGGGAAGCGATGATGGAAATGATGATGACGAGGATGAGGAAG
GGGGAGGATCAGCGCACATTCCGCCGCAGCTGGCCAGCAGTAGCGAGGGT
AGCAGCAGCGATGACAGCTCGGACGACGAGGCTTATGGGGTACGGCCCGC
CGAGCCGAGCAAGAGGAGAGAGGAGGGGAAGGAGGGGGCTTTCGCCTCGC
CAATGGAGGAAGGCGATGGTACCGGCGGCAATGGTGACGGCGATGGGGAG
GACGGAGAAGAGTCTCGGAAGCGCAAGGGGGAGGAAGGAGGAGGTGGCGG
GCCAAAGAAGCGTCGGTTGCAGCGAGCACAGCAGAGCGATGATTCAGGAT
CGGACGAGGAAGACGAGCTCTTCGGCATTAGCAGCAAACCTACTCCGGCG
GCTACTGCTACGTTTGAGATGCCAGCTAGTGATCCTCTCCGGGCTGCTGT
GGCTCCATCCTCACCAGCGCTATCCGTGGCATTGGCGGGCCCACCTTCTG
CTGGCAGTGGCGAGGAAGGAGGGCAGGGAGCTGGAGAATTGATTGCCTCA
CCGTCTGCAGTGACGGGGCGGCGCAAGGTTATGGCTGACGAGGACGACGA
AGGCGACGAATAAACAATACAAAGCAAATAGTAAAATAGACTTATGGGGC
GTTGTTACAAAGGAAGCAAAATTAAATGGGGGACAATATGGTGGGGAAAT
TGATATTGAATTGTGGGAGATAAGTTTATTACTATATTTCCTACCCCCCT
CCCGAAAGATTAACCTTATTTGCTAATCTCTGTCACCTTTCCGCTGGCCG
CATTAACTTTCACTTCTACCTGCTTTTCTTTAAAATTTATAGTACATCGC
ATTGGCAGTAGGACTCTAGAAATGTATGTGACAAAGAAAAAGCTACAGTT
GTCTCCGACCAGAAGGCTTTTGCACATATTAAAAAATAGACTTGGCT

protein sequence of jgi.p|Nanoce1779_2|580853

>mRNA_2593-protein ID=mRNA_2593-protein|Name=jgi.p|Nanoce1779_2|580853|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MWEAMMEMMMTRMRKGEDQRTFRRSWPAVARVAAAMTARTTRLMGYGPPS
RARGERRGRRGLSPRQWRKAMVPAAMVTAMGRTEKSLGSARGRKEEVAGQ
RSVGCSEHSRAMIQDRTRKTSSSALAANLLRRLLLRLRCQLVILSGLLWL
HPHQRYPWHWRAHLLLAVARKEGRELEN*

mRNA from alignment at scaffold_5:723145..724191-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2593 ID=mRNA_2593|Name=jgi.p|Nanoce1779_2|580853|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp|location=Sequence derived from alignment at scaffold_5:723145..724191- (Nannochloropsis oceanica)
AGTCAAGCAAAAAGGGGGCAGGGAGAAAGAGTGGGGAGATCTTATCGGAG
GGGGAGGAGGAGGAAGGGAGCGACGGGGGGGAGGGAAGGAAGCGGCCTAA
AAAGCATGTGGGAAGCGATGATGGAAATGATGATGACGAGGATGAGGAAG
GGGGAGGATCAGCGCACATTCCGCCGCAGCTGGCCAGCAGTAGCGAGGGT
AGCAGCAGCGATGACAGCTCGGACGACGAGGCTTATGGGGTACGGCCCGC
CGAGCCGAGCAAGAGGAGAGAGGAGGGGAAGGAGGGGGCTTTCGCCTCGC
CAATGGAGGAAGGCGATGGTACCGGCGGCAATGGTGACGGCGATGGGGAG
GACGGAGAAGAGTCTCGGAAGCGCAAGGGGGAGGAAGGAGGAGGTGGCGG
GCCAAAGAAGCGTCGGTTGCAGCGAGCACAGCAGAGCGATGATTCAGGAT
CGGACGAGGAAGACGAGCTCTTCGGCATTAGCAGCAAACCTACTCCGGCG
GCTACTGCTACGTTTGAGATGCCAGCTAGTGATCCTCTCCGGGCTGCTGT
GGCTCCATCCTCACCAGCGCTATCCGTGGCATTGGCGGGCCCACCTTCTG
CTGGCAGTGGCGAGGAAGGAGGGCAGGGAGCTGGAGAATTGATTGCCTCA
CCGTCTGCAGTGACGGGGCGGCGCAAGGTTATGGCTGACGAGGACGACGA
AGGCGACGAATAAACAATACAAAGCAAATAGTAAAATAGACTTATGGGGC
GTTGTTACAAAGGAAGCAAAATTAAATGGGGGACAATATGGTGGGGAAAT
TGATATTGAATTGTGGGAGATAAGTTTATTACTATATTTCCTACCCCCCT
CCCGAAAGATTAACCTTATTTGCTAATCTCTGTCACCTTTCCGCTGGCCG
CATTAACTTTCACTTCTACCTGCTTTTCTTTAAAATTTATAGTACATCGC
ATTGGCAGTAGGACTCTAGAAATGTATGTGACAAAGAAAAAGCTACAGTT
GTCTCCGACCAGAAGGCTTTTGCACATATTAAAAAATAGACTTGGCT

Coding sequence (CDS) from alignment at scaffold_5:723145..724191-

>mRNA_2593 ID=mRNA_2593|Name=jgi.p|Nanoce1779_2|580853|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_5:723145..724191- (Nannochloropsis oceanica)
ATGTGGGAAGCGATGATGGAAATGATGATGACGAGGATGAGGAAGGGGGA
GGATCAGCGCACATTCCGCCGCAGCTGGCCAGCAGTAGCGAGGGTAGCAG
CAGCGATGACAGCTCGGACGACGAGGCTTATGGGGTACGGCCCGCCGAGC
CGAGCAAGAGGAGAGAGGAGGGGAAGGAGGGGGCTTTCGCCTCGCCAATG
GAGGAAGGCGATGGTACCGGCGGCAATGGTGACGGCGATGGGGAGGACGG
AGAAGAGTCTCGGAAGCGCAAGGGGGAGGAAGGAGGAGGTGGCGGGCCAA
AGAAGCGTCGGTTGCAGCGAGCACAGCAGAGCGATGATTCAGGATCGGAC
GAGGAAGACGAGCTCTTCGGCATTAGCAGCAAACCTACTCCGGCGGCTAC
TGCTACGTTTGAGATGCCAGCTAGTGATCCTCTCCGGGCTGCTGTGGCTC
CATCCTCACCAGCGCTATCCGTGGCATTGGCGGGCCCACCTTCTGCTGGC
AGTGGCGAGGAAGGAGGGCAGGGAGCTGGAGAATTGA

Synonyms

Publications