jgi.p|Nanoce1779_2|622739, mRNA_2592 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622739
Unique Name	mRNA_2592
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1173
Alignment location	scaffold_5:721851..723023 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	622825
Track	FilteredModels2
ProteinId	622739

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:721851..723023 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622739	gene_2592	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622739	mRNA_2592-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2592	CDS_2592	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:721851..723023+
coding sequence from alignment at scaffold_5:721851..723023+

mRNA sequence

>mRNA_2592 ID=mRNA_2592|Name=jgi.p|Nanoce1779_2|622739|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp
ATGCCGGAGCAACTTGCTCCCTTAGGTCTCCAACGCTTGGGAAGCACAGG
CACGGTCAGCCAAGCCGTTGCCGGACTCACGGACGAACAACAACTAGTTG
CTGACGTCTGGAAACGCGTGGATAAACTCTACCTCGATCGCACATTTAAT
GGACAAGATTGGTTCGCCTTGCGTCAAACAGCTTTGAAAAAACCTTACAA
GACTACTGCACAAGTCTATGATGGAATTAAAGCGATGCTGGAGCCCTTAG
GTGACCCATACACGCGCTTCCTCCCTCCTTCCCAGTACGACTCTTTATTC
GGTCTCGCCACTGGAAGTGTCGCTGGGATAGGGGTAAGTTTATTGATAGA
TCCAGCAACACAAGAACTAACTGTGGCAGAGGTGGAAAAAGGGTCCCCGG
CTGAAGCGGGGGGGTTGAGAGCAGGTGATAAATTATTGAACGTAGATGGG
CAGGCCACCACGGGCCTACTGGTTGATGATTGTGCTAATCTGTTGCGAGG
GCCCGCAGGGACGAAAGTGGGGGTGGTGGCCAAAAGTAAGACAGGAGAGG
CTAAGGATTTGATCATTACAAGGCAACTTATCAAGATCCAGAGCGTCGAG
GCGTCAACAGCAACGAAGGGAGGGAAGAAGGTAGGAGTAATCCGAATTCG
GTCTTTTTCGCAGACGACTGCCGATACCGTGGCGGCGGAGTTGGACAAAC
TGGAGAGGGAGGGGATTAGTGCGTTGGTCATTGATTTGAGGGGGAACCCG
GGTGGGTTCTTGGGAGGGGGAATTGACACTGCGCGACTTTTCCTGCCTAG
CTATGAGAAGATTGTCTCGGTGGTGGGGAAGACGGGTATTGTGGAGGAGT
ATCAGACGACGGATGAAGGGCGGGATACGACCAAACCTCTATTTGTTGTG
GTGGACAAGCGGACAGCGAGTGCCTCGGAGGTGTTGTCGGCGGCGTTAAA
GGAAAATGGGCGGGCCAAGCTGGTGGGTGAAAAGACGTTTGGGAAGGGTG
TGGTGCAAACGATCGAGCAGGTTGGGCAGGGAGCAGGAGTGTCTGTGACC
ATTGCTGCATATTCGACGCCGTTGGGTAATAATATCAATAAGAAGGGGAT
TGAGGTTGATATTCCTTCGGTATGCGAGGCGACAGATACGGCCGTGAGCT
GCTTACCGGAGGGGGCAATTTAA

protein sequence of jgi.p|Nanoce1779_2|622739

>mRNA_2592-protein ID=mRNA_2592-protein|Name=jgi.p|Nanoce1779_2|622739|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MPEQLAPLGLQRLGSTGTVSQAVAGLTDEQQLVADVWKRVDKLYLDRTFN
GQDWFALRQTALKKPYKTTAQVYDGIKAMLEPLGDPYTRFLPPSQYDSLF
GLATGSVAGIGVSLLIDPATQELTVAEVEKGSPAEAGGLRAGDKLLNVDG
QATTGLLVDDCANLLRGPAGTKVGVVAKSKTGEAKDLIITRQLIKIQSVE
ASTATKGGKKVGVIRIRSFSQTTADTVAAELDKLEREGISALVIDLRGNP
GGFLGGGIDTARLFLPSYEKIVSVVGKTGIVEEYQTTDEGRDTTKPLFVV
VDKRTASASEVLSAALKENGRAKLVGEKTFGKGVVQTIEQVGQGAGVSVT
IAAYSTPLGNNINKKGIEVDIPSVCEATDTAVSCLPEGAI*

mRNA from alignment at scaffold_5:721851..723023+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2592 ID=mRNA_2592|Name=jgi.p|Nanoce1779_2|622739|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp|location=Sequence derived from alignment at scaffold_5:721851..723023+ (Nannochloropsis oceanica)
ATGCCGGAGCAACTTGCTCCCTTAGGTCTCCAACGCTTGGGAAGCACAGG
CACGGTCAGCCAAGCCGTTGCCGGACTCACGGACGAACAACAACTAGTTG
CTGACGTCTGGAAACGCGTGGATAAACTCTACCTCGATCGCACATTTAAT
GGACAAGATTGGTTCGCCTTGCGTCAAACAGCTTTGAAAAAACCTTACAA
GACTACTGCACAAGTCTATGATGGAATTAAAGCGATGCTGGAGCCCTTAG
GTGACCCATACACGCGCTTCCTCCCTCCTTCCCAGTACGACTCTTTATTC
GGTCTCGCCACTGGAAGTGTCGCTGGGATAGGGGTAAGTTTATTGATAGA
TCCAGCAACACAAGAACTAACTGTGGCAGAGGTGGAAAAAGGGTCCCCGG
CTGAAGCGGGGGGGTTGAGAGCAGGTGATAAATTATTGAACGTAGATGGG
CAGGCCACCACGGGCCTACTGGTTGATGATTGTGCTAATCTGTTGCGAGG
GCCCGCAGGGACGAAAGTGGGGGTGGTGGCCAAAAGTAAGACAGGAGAGG
CTAAGGATTTGATCATTACAAGGCAACTTATCAAGATCCAGAGCGTCGAG
GCGTCAACAGCAACGAAGGGAGGGAAGAAGGTAGGAGTAATCCGAATTCG
GTCTTTTTCGCAGACGACTGCCGATACCGTGGCGGCGGAGTTGGACAAAC
TGGAGAGGGAGGGGATTAGTGCGTTGGTCATTGATTTGAGGGGGAACCCG
GGTGGGTTCTTGGGAGGGGGAATTGACACTGCGCGACTTTTCCTGCCTAG
CTATGAGAAGATTGTCTCGGTGGTGGGGAAGACGGGTATTGTGGAGGAGT
ATCAGACGACGGATGAAGGGCGGGATACGACCAAACCTCTATTTGTTGTG
GTGGACAAGCGGACAGCGAGTGCCTCGGAGGTGTTGTCGGCGGCGTTAAA
GGAAAATGGGCGGGCCAAGCTGGTGGGTGAAAAGACGTTTGGGAAGGGTG
TGGTGCAAACGATCGAGCAGGTTGGGCAGGGAGCAGGAGTGTCTGTGACC
ATTGCTGCATATTCGACGCCGTTGGGTAATAATATCAATAAGAAGGGGAT
TGAGGTTGATATTCCTTCGGTATGCGAGGCGACAGATACGGCCGTGAGCT
GCTTACCGGAGGGGGCAATTTAA

Coding sequence (CDS) from alignment at scaffold_5:721851..723023+

>mRNA_2592 ID=mRNA_2592|Name=jgi.p|Nanoce1779_2|622739|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at scaffold_5:721851..723023+ (Nannochloropsis oceanica)
ATGCCGGAGCAACTTGCTCCCTTAGGTCTCCAACGCTTGGGAAGCACAGG
CACGGTCAGCCAAGCCGTTGCCGGACTCACGGACGAACAACAACTAGTTG
CTGACGTCTGGAAACGCGTGGATAAACTCTACCTCGATCGCACATTTAAT
GGACAAGATTGGTTCGCCTTGCGTCAAACAGCTTTGAAAAAACCTTACAA
GACTACTGCACAAGTCTATGATGGAATTAAAGCGATGCTGGAGCCCTTAG
GTGACCCATACACGCGCTTCCTCCCTCCTTCCCAGTACGACTCTTTATTC
GGTCTCGCCACTGGAAGTGTCGCTGGGATAGGGGTAAGTTTATTGATAGA
TCCAGCAACACAAGAACTAACTGTGGCAGAGGTGGAAAAAGGGTCCCCGG
CTGAAGCGGGGGGGTTGAGAGCAGGTGATAAATTATTGAACGTAGATGGG
CAGGCCACCACGGGCCTACTGGTTGATGATTGTGCTAATCTGTTGCGAGG
GCCCGCAGGGACGAAAGTGGGGGTGGTGGCCAAAAGTAAGACAGGAGAGG
CTAAGGATTTGATCATTACAAGGCAACTTATCAAGATCCAGAGCGTCGAG
GCGTCAACAGCAACGAAGGGAGGGAAGAAGGTAGGAGTAATCCGAATTCG
GTCTTTTTCGCAGACGACTGCCGATACCGTGGCGGCGGAGTTGGACAAAC
TGGAGAGGGAGGGGATTAGTGCGTTGGTCATTGATTTGAGGGGGAACCCG
GGTGGGTTCTTGGGAGGGGGAATTGACACTGCGCGACTTTTCCTGCCTAG
CTATGAGAAGATTGTCTCGGTGGTGGGGAAGACGGGTATTGTGGAGGAGT
ATCAGACGACGGATGAAGGGCGGGATACGACCAAACCTCTATTTGTTGTG
GTGGACAAGCGGACAGCGAGTGCCTCGGAGGTGTTGTCGGCGGCGTTAAA
GGAAAATGGGCGGGCCAAGCTGGTGGGTGAAAAGACGTTTGGGAAGGGTG
TGGTGCAAACGATCGAGCAGGTTGGGCAGGGAGCAGGAGTGTCTGTGACC
ATTGCTGCATATTCGACGCCGTTGGGTAATAATATCAATAAGAAGGGGAT
TGAGGTTGATATTCCTTCGGTATGCGAGGCGACAGATACGGCCGTGAGCT
GCTTACCGGAGGGGGCAATTTAA

Synonyms

Publications