jgi.p|Nanoce1779_2|332972, mRNA_2590 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|332972
Unique NamemRNA_2590
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length682
Alignment locationscaffold_5:717927..718794 +

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Properties
Property NameValue
TranscriptId333058
TrackFilteredModels2
ProteinId332972
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:717927..718794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|332972gene_2590Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|332972mRNA_2590-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2590CDS_2590Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2590 ID=mRNA_2590|Name=jgi.p|Nanoce1779_2|332972|organism=Nannochloropsis oceanica|type=mRNA|length=682bp
CCTCGCTTACTTTCTTGTTTCGTGGCTGTGGAGTAATTCGCAATCTACAC
GCTGTTTTCACGATAGTGGTGGTAGTGGTAGGGGCGAGAATGCAGCGAGA
GTAAGAAACTGCCTCCAACCGCTCGTTCCCGTGCACACGTCGTCGGCTTC
ATTTTCGGTCGCAATTTTCCCATTCTTCCTCTCTTGTCCACAATTATGCC
TCCATTTCCCTGTTTCCCTCTTAATATTCTTTCTACTCATCTTCCTCTCC
CTTGTTTGTGTACTTCTGCATTCCGACTCTTGTATGAGTCGGCATCCTTC
TGTTGCATGTCGACTTCTCCTTGGCCCTCCTTTTTTCTTCTTCCCTGGTT
GTTCCCTTGCTGCTTCTTTGCTAGCTTGCGTCTTTGCTGCCTCTCTGTCT
ATCTCTCGTCACCTAAGGCTGCTGCTGCTTCTCCTTCTTCTTTCATCAGT
TCTTAGTGTTACAATGCACGGCCCCTTATCCTATGCACACAGGGACACCC
TTTCCCTTCCTCCGCCTCCCTCCATTCCAACTCTTTCCTCTCTCCTTTTC
AATCCAATTCTCTTTTCTCAAGCTCTACTTATATTGCCGAAACACCAGAT
GCCATTACAAGCCTCTTCCTCTTCAACAATACGTGCGGCGAGGTAAGAAA
AACACTCAGCACTACTGTCCGAATACACACTG
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protein sequence of jgi.p|Nanoce1779_2|332972

>mRNA_2590-protein ID=mRNA_2590-protein|Name=jgi.p|Nanoce1779_2|332972|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MSRHPSVACRLLLGPPFFFFPGCSLAASLLACVFAASLSISRHLRLLLLL
LLLSSVLSVTMHGPLSYAHRDTLSLPPPPSIPTLSSLLFNPILFSQALLI
LPKHQMPLQASSSSTIRAAR*
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mRNA from alignment at scaffold_5:717927..718794+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2590 ID=mRNA_2590|Name=jgi.p|Nanoce1779_2|332972|organism=Nannochloropsis oceanica|type=mRNA|length=868bp|location=Sequence derived from alignment at scaffold_5:717927..718794+ (Nannochloropsis oceanica)
CCTCGCTTACTTTCTTGTTTCGTGGCTGTGGAGTAATTCGCAATCTACAC
GCTGTTTTCACGATAGTGGTGGTAGTGGTAGGGGCGAGAATGCAGCGAGA
GTAAGAAACTGCCTCCAACCGCTCGTTCCCGTGCACACGTCGTCGGCTTC
ATTTTCGGTCGCAATTTTCCCATTCTTCCTCTCTTGTCCACAATTATGCC
TCCATTTCCCTGTTTCCCTCTTAATATTCTTTCTACTCATCTTCCTCTCC
CTTGTTTGTGTACTTCTGCATTCCGACTCTTGTATGAGTCGGCATCCTTC
TGTTGCATGTCGACTTCTCCTTGGCCCTCCTTTTTTCTTCTTCCTCATCT
GCCTCCTTCTCATCGTTCTGTGGATATAGTTCTTATTGGTATAGGTGGAA
TGCATCCCTTCCAGTTGCTTCCTCCCTCCCCCCCTCAGATACAACCCCGA
CTACCATCATCATCGTCGTCTTGTCTCTTGACGTTCTACTCTCTACTGGT
GAGCTTTTCATTTATCATCTTCCTTCTTCCCTGGTTGTTCCCTTGCTGCT
TCTTTGCTAGCTTGCGTCTTTGCTGCCTCTCTGTCTATCTCTCGTCACCT
AAGGCTGCTGCTGCTTCTCCTTCTTCTTTCATCAGTTCTTAGTGTTACAA
TGCACGGCCCCTTATCCTATGCACACAGGGACACCCTTTCCCTTCCTCCG
CCTCCCTCCATTCCAACTCTTTCCTCTCTCCTTTTCAATCCAATTCTCTT
TTCTCAAGCTCTACTTATATTGCCGAAACACCAGATGCCATTACAAGCCT
CTTCCTCTTCAACAATACGTGCGGCGAGGTAAGAAAAACACTCAGCACTA
CTGTCCGAATACACACTG
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Coding sequence (CDS) from alignment at scaffold_5:717927..718794+

>mRNA_2590 ID=mRNA_2590|Name=jgi.p|Nanoce1779_2|332972|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_5:717927..718794+ (Nannochloropsis oceanica)
ATGAGTCGGCATCCTTCTGTTGCATGTCGACTTCTCCTTGGCCCTCCTTT
TTTCTTCTTCCCTGGTTGTTCCCTTGCTGCTTCTTTGCTAGCTTGCGTCT
TTGCTGCCTCTCTGTCTATCTCTCGTCACCTAAGGCTGCTGCTGCTTCTC
CTTCTTCTTTCATCAGTTCTTAGTGTTACAATGCACGGCCCCTTATCCTA
TGCACACAGGGACACCCTTTCCCTTCCTCCGCCTCCCTCCATTCCAACTC
TTTCCTCTCTCCTTTTCAATCCAATTCTCTTTTCTCAAGCTCTACTTATA
TTGCCGAAACACCAGATGCCATTACAAGCCTCTTCCTCTTCAACAATACG
TGCGGCGAGGTAAATGAGTCGGCATCCTTCTGTTGCATGTCGACTTCTCC
TTGGCCCTCCTTTTTTCTTCTTCCCTGGTTGTTCCCTTGCTGCTTCTTTG
CTAGCTTGCGTCTTTGCTGCCTCTCTGTCTATCTCTCGTCACCTAAGGCT
GCTGCTGCTTCTCCTTCTTCTTTCATCAGTTCTTAGTGTTACAATGCACG
GCCCCTTATCCTATGCACACAGGGACACCCTTTCCCTTCCTCCGCCTCCC
TCCATTCCAACTCTTTCCTCTCTCCTTTTCAATCCAATTCTCTTTTCTCA
AGCTCTACTTATATTGCCGAAACACCAGATGCCATTACAAGCCTCTTCCT
CTTCAACAATACGTGCGGCGAGGTAA
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Synonyms
Publications