jgi.p|Nanoce1779_2|580844, mRNA_2589 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580844
Unique Name	mRNA_2589
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1305
Alignment location	scaffold_5:716058..717481 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580930
Track	FilteredModels2
ProteinId	580844

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:716058..717481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580844	gene_2589	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580844	mRNA_2589-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2589	CDS_2589	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:716058..717481+
coding sequence from alignment at scaffold_5:716058..717481+

mRNA sequence

>mRNA_2589 ID=mRNA_2589|Name=jgi.p|Nanoce1779_2|580844|organism=Nannochloropsis oceanica|type=mRNA|length=1305bp
AGCACGGCGATCAAAACACACGTTGCAAACACAGGAGCCCAAGGCACGCA
CCAGCATGGGCAAGGAGACGGTGGTGCTGGACCTGGGCAGTGCGCTGCTC
AAATGTGGCTTTGCAGGAGAGAGCGCACCCAGACATTTGCTTCCCTCCCC
GCTTGATGGCTGGAGTAGGCAAGCGACCATGCAGGCATGGGGACGGGAGG
AATGGGTGCAAGTCTTGGGTCCCCTGGTCGTGCGCCTTCTTGTTCACCAC
CTGTACGTCCGGCCCCGCGACCGTAAGGTCATCATTTGCGAGCCCTTAGC
AGGGCCTACTGCTTTCCGTGAGGCGCTTGCGCACGTTCTATTCCATTGGC
TCAAGGTGCCCGCCCTCCTAGTCGTGCCCTCCTTGACCCTGCCTCTCTAC
ACGGCAGGAGCAGATGGAGGGCTGGTAGTGGACATAGGCTTTCGGGAGTG
CCATGTATTGGCGGTTACGTTTGGAATACCTTTGTTGCACACATATACTG
CGGCGGGAGTTGGAGCCGCCACGGTGTTGGAGCGAGCGCAGGAGTTGCTT
CGGAAGGAGAAGGGTACGGGAGGTGAGAAGGATGACCTTCCCCTCGCGAC
GCTGCAAGACGTGGTGACACGCGCCTGTTTTGTCCCCAGCCGAGAGACAA
ATGAGAGAAGAGTTACTAAATCCATAGCTTATGATGAAGGGTCTATCTCT
CTAACCTTCAGCCCCGAGCTCCGCAGTAGCCTCGCCGAGGTCCTCTTCGA
CGACAACGCCGATGACGGCGCATCCCTCCCCGTTGCTGTATTAGAATGCT
TAAAAAAATGCCCGCGGGACGTGCGACGTATTGTGGCGGGGCACGTGCTT
GTCACAGGAGGAGTAGCCATGTTGCCGGGACTATGCCGGAGACTCGCGGA
GGAGGTGAAACACCAAGCGAAGGTCAAGACAAAGTATCAGGAGCTTCGTC
CACTTATGCTCCGACAATTGGAAAAGAACCCTCTCCCCCACTCTTCCCCT
CCTAATTCTTCTTGTCCTTTTAACTTCAGTGGTTTGTGTGTCATTCGGGA
CTCAGCCTTACTTTCTCCCCGCAACGTCCTCACTTGGGTGGGAGGCTCTA
TTCTCGGAGTCCTAGTCGAGACTGCTCCGCATGATTCCTCTCCTTTCGTC
TCGCGCGAGTCTTATTTGGCCGCTGCTGTCGACAAACAAGGGAGGGAGAA
AGAAGAGGGGAGGGGGGGATGGAGTTGTTTTGCCCCGGTGCTTTCGGAAT
GGTTGTCTGTCGGGGATGACTTGCACATGAATGAGAGAAGGAAATAAACT
CAATT

protein sequence of jgi.p|Nanoce1779_2|580844

>mRNA_2589-protein ID=mRNA_2589-protein|Name=jgi.p|Nanoce1779_2|580844|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MGKETVVLDLGSALLKCGFAGESAPRHLLPSPLDGWSRQATMQAWGREEW
VQVLGPLVVRLLVHHLYVRPRDRKVIICEPLAGPTAFREALAHVLFHWLK
VPALLVVPSLTLPLYTAGADGGLVVDIGFRECHVLAVTFGIPLLHTYTAA
GVGAATVLERAQELLRKEKGTGGEKDDLPLATLQDVVTRACFVPSRETNE
RRVTKSIAYDEGSISLTFSPELRSSLAEVLFDDNADDGASLPVAVLECLK
KCPRDVRRIVAGHVLVTGGVAMLPGLCRRLAEEVKHQAKVKTKYQELRPL
MLRQLEKNPLPHSSPPNSSCPFNFSGLCVIRDSALLSPRNVLTWVGGSIL
GVLVETAPHDSSPFVSRESYLAAAVDKQGREKEEGRGGWSCFAPVLSEWL
SVGDDLHMNERRK*

mRNA from alignment at scaffold_5:716058..717481+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2589 ID=mRNA_2589|Name=jgi.p|Nanoce1779_2|580844|organism=Nannochloropsis oceanica|type=mRNA|length=1424bp|location=Sequence derived from alignment at scaffold_5:716058..717481+ (Nannochloropsis oceanica)
AGCACGGCGATCAAAACACACGTTGCAAACACAGGAGCCCAAGGCACGCA
CCAGCATGGGCAAGGAGACGGTGGTGCTGGACCTGGGCAGGTATGTGACG
GTGGGCATTTTGATGGACCCGTTGCTCGCTGTTTGCACTTTTCCGCGAGC
TTCCACGCCTCTCGCACGCACAACCTACAACCAACGTGCCGCCACCACCA
CCACCACAGTGCGCTGCTCAAATGTGGCTTTGCAGGAGAGAGCGCACCCA
GACATTTGCTTCCCTCCCCGCTTGATGGCTGGAGTAGGCAAGCGACCATG
CAGGCATGGGGACGGGAGGAATGGGTGCAAGTCTTGGGTCCCCTGGTCGT
GCGCCTTCTTGTTCACCACCTGTACGTCCGGCCCCGCGACCGTAAGGTCA
TCATTTGCGAGCCCTTAGCAGGGCCTACTGCTTTCCGTGAGGCGCTTGCG
CACGTTCTATTCCATTGGCTCAAGGTGCCCGCCCTCCTAGTCGTGCCCTC
CTTGACCCTGCCTCTCTACACGGCAGGAGCAGATGGAGGGCTGGTAGTGG
ACATAGGCTTTCGGGAGTGCCATGTATTGGCGGTTACGTTTGGAATACCT
TTGTTGCACACATATACTGCGGCGGGAGTTGGAGCCGCCACGGTGTTGGA
GCGAGCGCAGGAGTTGCTTCGGAAGGAGAAGGGTACGGGAGGTGAGAAGG
ATGACCTTCCCCTCGCGACGCTGCAAGACGTGGTGACACGCGCCTGTTTT
GTCCCCAGCCGAGAGACAAATGAGAGAAGAGTTACTAAATCCATAGCTTA
TGATGAAGGGTCTATCTCTCTAACCTTCAGCCCCGAGCTCCGCAGTAGCC
TCGCCGAGGTCCTCTTCGACGACAACGCCGATGACGGCGCATCCCTCCCC
GTTGCTGTATTAGAATGCTTAAAAAAATGCCCGCGGGACGTGCGACGTAT
TGTGGCGGGGCACGTGCTTGTCACAGGAGGAGTAGCCATGTTGCCGGGAC
TATGCCGGAGACTCGCGGAGGAGGTGAAACACCAAGCGAAGGTCAAGACA
AAGTATCAGGAGCTTCGTCCACTTATGCTCCGACAATTGGAAAAGAACCC
TCTCCCCCACTCTTCCCCTCCTAATTCTTCTTGTCCTTTTAACTTCAGTG
GTTTGTGTGTCATTCGGGACTCAGCCTTACTTTCTCCCCGCAACGTCCTC
ACTTGGGTGGGAGGCTCTATTCTCGGAGTCCTAGTCGAGACTGCTCCGCA
TGATTCCTCTCCTTTCGTCTCGCGCGAGTCTTATTTGGCCGCTGCTGTCG
ACAAACAAGGGAGGGAGAAAGAAGAGGGGAGGGGGGGATGGAGTTGTTTT
GCCCCGGTGCTTTCGGAATGGTTGTCTGTCGGGGATGACTTGCACATGAA
TGAGAGAAGGAAATAAACTCAATT

Coding sequence (CDS) from alignment at scaffold_5:716058..717481+

>mRNA_2589 ID=mRNA_2589|Name=jgi.p|Nanoce1779_2|580844|organism=Nannochloropsis oceanica|type=CDS|length=2484bp|location=Sequence derived from alignment at scaffold_5:716058..717481+ (Nannochloropsis oceanica)
ATGGGCAAGGAGACGGTGGTGCTGGACCTGGGCAGTGCGCTGCTCAAATG
TGGCTTTGCAGGAGAGAGCGCACCCAGACATTTGCTTCCCTCCCCGCTTG
ATGGCTGGAGTAGGCAAGCGACCATGCAGGCATGGGGACGGGAGGAATGG
GTGCAAGTCTTGGGTCCCCTGGTCGTGCGCCTTCTTGTTCACCACCTGTA
CGTCCGGCCCCGCGACCGTAAGGTCATCATTTGCGAGCCCTTAGCAGGGC
CTACTGCTTTCCGTGAGGCGCTTGCGCACGTTCTATTCCATTGGCTCAAG
GTGCCCGCCCTCCTAGTCGTGCCCTCCTTGACCCTGCCTCTCTACACGGC
AGGAGCAGATGGAGGGCTGGTAGTGGACATAGGCTTTCGGGAGTGCCATG
TATTGGCGGTTACGTTTGGAATACCTTTGTTGCACACATATACTGCGGCG
GGAGTTGGAGCCGCCACGGTGTTGGAGCGAGCGCAGGAGTTGCTTCGGAA
GGAGAAGGGTACGGGAGGTGAGAAGGATGACCTTCCCCTCGCGACGCTGC
AAGACGTGGTGACACGCGCCTGTTTTGTCCCCAGCCGAGAGACAAATGAG
AGAAGAGTTACTAAATCCATAGCTTATGATGAAGGGTCTATCTCTCTAAC
CTTCAGCCCCGAGCTCCGCAGTAGCCTCGCCGAGGTCCTCTTCGACGACA
ACGCCGATGACGGCGCATCCCTCCCCGTTGCTGTATTAGAATGCTTAAAA
AAATGCCCGCGGGACGTGCGACGTATTGTGGCGGGGCACGTGCTTGTCAC
AGGAGGAGTAGCCATGTTGCCGGGACTATGCCGGAGACTCGCGGAGGAGG
TGAAACACCAAGCGAAGGTCAAGACAAAGTATCAGGAGCTTCGTCCACTT
ATGCTCCGACAATTGGAAAAGAACCCTCTCCCCCACTCTTCCCCTCCTAA
TTCTTCTTGTCCTTTTAACTTCAGTGGTTTGTGTGTCATTCGGGACTCAG
CCTTACTTTCTCCCCGCAACGTCCTCACTTGGGTGGGAGGCTCTATTCTC
GGAGTCCTAGTCGAGACTGCTCCGCATGATTCCTCTCCTTTCGTCTCGCG
CGAGTCTTATTTGGCCGCTGCTGTCGACAAACAAGGGAGGGAGAAAGAAG
AGGGGAGGGGGGGATGGAGTTGTTTTGCCCCGGTGCTTTCGGAATGGTTG
TCTGTCGGGGATGACTTGCACATGAATGAGAGAAGGAAATAAATGGGCAA
GGAGACGGTGGTGCTGGACCTGGGCAGTGCGCTGCTCAAATGTGGCTTTG
CAGGAGAGAGCGCACCCAGACATTTGCTTCCCTCCCCGCTTGATGGCTGG
AGTAGGCAAGCGACCATGCAGGCATGGGGACGGGAGGAATGGGTGCAAGT
CTTGGGTCCCCTGGTCGTGCGCCTTCTTGTTCACCACCTGTACGTCCGGC
CCCGCGACCGTAAGGTCATCATTTGCGAGCCCTTAGCAGGGCCTACTGCT
TTCCGTGAGGCGCTTGCGCACGTTCTATTCCATTGGCTCAAGGTGCCCGC
CCTCCTAGTCGTGCCCTCCTTGACCCTGCCTCTCTACACGGCAGGAGCAG
ATGGAGGGCTGGTAGTGGACATAGGCTTTCGGGAGTGCCATGTATTGGCG
GTTACGTTTGGAATACCTTTGTTGCACACATATACTGCGGCGGGAGTTGG
AGCCGCCACGGTGTTGGAGCGAGCGCAGGAGTTGCTTCGGAAGGAGAAGG
GTACGGGAGGTGAGAAGGATGACCTTCCCCTCGCGACGCTGCAAGACGTG
GTGACACGCGCCTGTTTTGTCCCCAGCCGAGAGACAAATGAGAGAAGAGT
TACTAAATCCATAGCTTATGATGAAGGGTCTATCTCTCTAACCTTCAGCC
CCGAGCTCCGCAGTAGCCTCGCCGAGGTCCTCTTCGACGACAACGCCGAT
GACGGCGCATCCCTCCCCGTTGCTGTATTAGAATGCTTAAAAAAATGCCC
GCGGGACGTGCGACGTATTGTGGCGGGGCACGTGCTTGTCACAGGAGGAG
TAGCCATGTTGCCGGGACTATGCCGGAGACTCGCGGAGGAGGTGAAACAC
CAAGCGAAGGTCAAGACAAAGTATCAGGAGCTTCGTCCACTTATGCTCCG
ACAATTGGAAAAGAACCCTCTCCCCCACTCTTCCCCTCCTAATTCTTCTT
GTCCTTTTAACTTCAGTGGTTTGTGTGTCATTCGGGACTCAGCCTTACTT
TCTCCCCGCAACGTCCTCACTTGGGTGGGAGGCTCTATTCTCGGAGTCCT
AGTCGAGACTGCTCCGCATGATTCCTCTCCTTTCGTCTCGCGCGAGTCTT
ATTTGGCCGCTGCTGTCGACAAACAAGGGAGGGAGAAAGAAGAGGGGAGG
GGGGGATGGAGTTGTTTTGCCCCGGTGCTTTCGGAATGGTTGTCTGTCGG
GGATGACTTGCACATGAATGAGAGAAGGAAATAA

Synonyms

Publications