jgi.p|Nanoce1779_2|580840, mRNA_2588 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580840
Unique NamemRNA_2588
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length985
Alignment locationscaffold_5:714951..715935 -

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Properties
Property NameValue
TranscriptId580926
TrackFilteredModels2
ProteinId580840
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:714951..715935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580840gene_2588Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580840mRNA_2588-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2588CDS_2588Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2588 ID=mRNA_2588|Name=jgi.p|Nanoce1779_2|580840|organism=Nannochloropsis oceanica|type=mRNA|length=985bp
ACAGGCATGGACCCTAATCAAGGCTTCCTAGGGCCCTTTCGAGCCTTCAA
TGAGGCCCAGGCTGCAGCGTATTTGGCGCAGTACAAAGACGCTTTCGGGC
AAACCGCCGCATCCCGCCACATCAACACCAGAACAGAGCCAGCCGCACGC
GTGCCTTCGTCATCACCTAGCGGCGCCAAGAGCTTCGATCAAGAAAACGC
AGTACGCCCTTTGCTCGAAGGAGATTCTGATATTAGGCCCTTTCAGTCCC
ACCTCTTCTTGCCCTTTGTTGCAGCCATCATGACTAGTGAAAGCATTTTG
GAGCAAGTCCGCTCCATCCTTGGCCCCGACCTCTTGGTGTGGTTTACCGA
GTGGCACACCAAGCCTCCGCTTTCCAAAAAGGGATATGCCCCTCACCAAG
ACTCCACTTATGCTGGTCTCGAGCCGCCTGAGGATGTGGTTACGGTGTGG
GTCGCCTTAACAGCAGCTACCAAAGCAAATGGCTGCCTCCAATTTGTTCC
CATGCGCAGGTACAATGGCCGACAACTCCCACACATCGAAGAGCCTGGAG
ATCCGAGCAATGCTCTACTCAAAGGTCAGTATATCCCCAGAGCTACCCTT
GATTTTGAGGAGAATGCCGAGTTTGTCGAGCTCCAAGCCGGCGAAGCCAC
CATTCACGCCTTCCGGTGCGTGCATGCTTCAGGACCAAACACCACTTCTT
CCCCTCGCGTCGGACTCGCGATTCGTTATATGAAGCCATCAGTGCAACAA
CTAGCAGGCCAAAGGCGGGAAGGGGCTATGTTGGTCAGCGGAAAAGATGA
ATGGGGGCATTTTGATTTGTTGCCTGTTCCATGCGAAGCATGGAGGGAAG
AGGGTTTGATGCTGCACCGAAAAGAGATGGAGGCGATGCAGGTAAATTAT
ATGAGGCAGCAGCAGGAGGGGCAAAAAGAGGAGGGATGAAGTTAAAGCTA
TGCACCAAAAGTCTAAGAAAAAGGGAAGACAAGAG
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protein sequence of jgi.p|Nanoce1779_2|580840

>mRNA_2588-protein ID=mRNA_2588-protein|Name=jgi.p|Nanoce1779_2|580840|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MDPNQGFLGPFRAFNEAQAAAYLAQYKDAFGQTAASRHINTRTEPAARVP
SSSPSGAKSFDQENAVRPLLEGDSDIRPFQSHLFLPFVAAIMTSESILEQ
VRSILGPDLLVWFTEWHTKPPLSKKGYAPHQDSTYAGLEPPEDVVTVWVA
LTAATKANGCLQFVPMRRYNGRQLPHIEEPGDPSNALLKGQYIPRATLDF
EENAEFVELQAGEATIHAFRCVHASGPNTTSSPRVGLAIRYMKPSVQQLA
GQRREGAMLVSGKDEWGHFDLLPVPCEAWREEGLMLHRKEMEAMQVNYMR
QQQEGQKEEG*
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mRNA from alignment at scaffold_5:714951..715935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2588 ID=mRNA_2588|Name=jgi.p|Nanoce1779_2|580840|organism=Nannochloropsis oceanica|type=mRNA|length=985bp|location=Sequence derived from alignment at scaffold_5:714951..715935- (Nannochloropsis oceanica)
ACAGGCATGGACCCTAATCAAGGCTTCCTAGGGCCCTTTCGAGCCTTCAA
TGAGGCCCAGGCTGCAGCGTATTTGGCGCAGTACAAAGACGCTTTCGGGC
AAACCGCCGCATCCCGCCACATCAACACCAGAACAGAGCCAGCCGCACGC
GTGCCTTCGTCATCACCTAGCGGCGCCAAGAGCTTCGATCAAGAAAACGC
AGTACGCCCTTTGCTCGAAGGAGATTCTGATATTAGGCCCTTTCAGTCCC
ACCTCTTCTTGCCCTTTGTTGCAGCCATCATGACTAGTGAAAGCATTTTG
GAGCAAGTCCGCTCCATCCTTGGCCCCGACCTCTTGGTGTGGTTTACCGA
GTGGCACACCAAGCCTCCGCTTTCCAAAAAGGGATATGCCCCTCACCAAG
ACTCCACTTATGCTGGTCTCGAGCCGCCTGAGGATGTGGTTACGGTGTGG
GTCGCCTTAACAGCAGCTACCAAAGCAAATGGCTGCCTCCAATTTGTTCC
CATGCGCAGGTACAATGGCCGACAACTCCCACACATCGAAGAGCCTGGAG
ATCCGAGCAATGCTCTACTCAAAGGTCAGTATATCCCCAGAGCTACCCTT
GATTTTGAGGAGAATGCCGAGTTTGTCGAGCTCCAAGCCGGCGAAGCCAC
CATTCACGCCTTCCGGTGCGTGCATGCTTCAGGACCAAACACCACTTCTT
CCCCTCGCGTCGGACTCGCGATTCGTTATATGAAGCCATCAGTGCAACAA
CTAGCAGGCCAAAGGCGGGAAGGGGCTATGTTGGTCAGCGGAAAAGATGA
ATGGGGGCATTTTGATTTGTTGCCTGTTCCATGCGAAGCATGGAGGGAAG
AGGGTTTGATGCTGCACCGAAAAGAGATGGAGGCGATGCAGGTAAATTAT
ATGAGGCAGCAGCAGGAGGGGCAAAAAGAGGAGGGATGAAGTTAAAGCTA
TGCACCAAAAGTCTAAGAAAAAGGGAAGACAAGAG
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Coding sequence (CDS) from alignment at scaffold_5:714951..715935-

>mRNA_2588 ID=mRNA_2588|Name=jgi.p|Nanoce1779_2|580840|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at scaffold_5:714951..715935- (Nannochloropsis oceanica)
ATGGACCCTAATCAAGGCTTCCTAGGGCCCTTTCGAGCCTTCAATGAGGC
CCAGGCTGCAGCGTATTTGGCGCAGTACAAAGACGCTTTCGGGCAAACCG
CCGCATCCCGCCACATCAACACCAGAACAGAGCCAGCCGCACGCGTGCCT
TCGTCATCACCTAGCGGCGCCAAGAGCTTCGATCAAGAAAACGCAGTACG
CCCTTTGCTCGAAGGAGATTCTGATATTAGGCCCTTTCAGTCCCACCTCT
TCTTGCCCTTTGTTGCAGCCATCATGACTAGTGAAAGCATTTTGGAGCAA
GTCCGCTCCATCCTTGGCCCCGACCTCTTGGTGTGGTTTACCGAGTGGCA
CACCAAGCCTCCGCTTTCCAAAAAGGGATATGCCCCTCACCAAGACTCCA
CTTATGCTGGTCTCGAGCCGCCTGAGGATGTGGTTACGGTGTGGGTCGCC
TTAACAGCAGCTACCAAAGCAAATGGCTGCCTCCAATTTGTTCCCATGCG
CAGGTACAATGGCCGACAACTCCCACACATCGAAGAGCCTGGAGATCCGA
GCAATGCTCTACTCAAAGGTCAGTATATCCCCAGAGCTACCCTTGATTTT
GAGGAGAATGCCGAGTTTGTCGAGCTCCAAGCCGGCGAAGCCACCATTCA
CGCCTTCCGGTGCGTGCATGCTTCAGGACCAAACACCACTTCTTCCCCTC
GCGTCGGACTCGCGATTCGTTATATGAAGCCATCAGTGCAACAACTAGCA
GGCCAAAGGCGGGAAGGGGCTATGTTGGTCAGCGGAAAAGATGAATGGGG
GCATTTTGATTTGTTGCCTGTTCCATGCGAAGCATGGAGGGAAGAGGGTT
TGATGCTGCACCGAAAAGAGATGGAGGCGATGCAGGTAAATTATATGAGG
CAGCAGCAGGAGGGGCAAAAAGAGGAGGGATGA
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Synonyms
Publications