jgi.p|Nanoce1779_2|580828, mRNA_2583 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580828
Unique Name	mRNA_2583
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2242
Alignment location	scaffold_5:702663..704904 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580914
Track	FilteredModels2
ProteinId	580828

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:702663..704904 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580828	gene_2583	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580828	mRNA_2583-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2583	CDS_2583	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:702663..704904+
coding sequence from alignment at scaffold_5:702663..704904+

mRNA sequence

>mRNA_2583 ID=mRNA_2583|Name=jgi.p|Nanoce1779_2|580828|organism=Nannochloropsis oceanica|type=mRNA|length=2242bp
GAAGGCGGAGATTGAACAGACCGAGGAATGGTAGGAAAGCCATCCCAACG
CTCCGCTGGCTTTGGGTGGTGGTGGTGCTGCTGCTGGTGCTGCTGCAGTT
GGCGCGGAGGAGACACGGGGGGCTCCATCGTGTAGATAGACCAGCGTGGC
TGCTGCAATAGCTGCTGTGCGCTCTCCATTACCGGTACGTCCATCTTATT
GGTGCCGATTTGCCGAGAAGACGAGGCGAAGAAGGAGGAGATTGAAGACG
TCTGCGAATGAAAGCGCACTTCCCCACTACGCCCGGCCTTCCCTTTTCCC
TTCACTTCCGCCAACGATAACGACGCCGACTTGTCGGACAAGTCAGCAAT
AGAAAGGAATTCACCACCATTATCTCCCTCCTTATGTATCGTAGACAGAT
ATCCTTCTTCTCTTCCCTCCCCTCGACGAGAAATTTTGTCGTGTTGCTGC
TGCTGCCGCTGCTGCGCGCCAGGCCGTCCGGAGAGATCCTGACACTGTGT
GTCCTGCCACACAAACTTCTTGACTGCAGAAAGCATGCGATCGCTAAACC
AACTCTTAATCCTCTCTTTCTCAACGACGTCAGGTGTATGGATTGCGTGA
GCCCGGGATATCAGGGCATCTACTGACGGGGTGCTTGGCGCTGGTGCTTG
GAGTCCGGGTGGGGGAGGAGAGATGGGAGAGATAGGAGAAGGTGCGGGGA
CACGGGGAAATGTAGGCATGGGGGAGGCGAAGGTCCGGAGTGGCTGACAA
GAGGGCTGAATAGGACGGGCGAGGGTAGGAGAGCCGGAGGAGGAGAATTG
TCGTGTCGTTGACAACGTGGGGGACATGCCTTTGACACTTGTGGTAGAGG
AAGTGAGTAGAGGGGAAGAGGCAGTAGACGCGTTGGTGGGTGTGATATTC
TCATATTCTACTCCTTCTTGTTGTTGCTCGTCGCTTGCATGGTTCCGTCG
ACTTCCTTTTTCACCTGCTGCTACTCCGTTTTCTTCTACCTCCGCTATTT
TTTCGTCCAAATACAGGGCCGCTTCCGCTCCCTCTTCATCGTCATCATTA
TCGCTCGAATCAGAGCTCAAATAAAATATGGGACTATCCATGTCCCTACC
AGACTTCTGGCTGAGGCTACTGGAGGTACTGCCGGTTTCATTTTCGTGCT
TGGGGGTCAATGATGACGGACTCTTCTCCACATCTATCAACCGACGACGA
CCGCTGCTGCTTGTCGCACTCCTGGCACCGCTGCTGCTACCACCGTGTTT
TTTTTCGGGTTTTGTCGTGGTCAAAGGGGAACGAAAGATAGGGCTGACAC
CCATCTTGCCGATGGGTGTCATGTTGTCGTTGTCGCCCGCGCTGCTGGCA
CTGATGAAGCTGCTGTTGGCCACCCTTTCCTTTTTGTCCGAGGCAAGAGA
CTGCGCTCGGTCGTGATGGTTGCTCAAGTCGTCAAGGCTTTGAAAGGGTG
CCCGCTGCGGGTCCCGGTCACGGTCAAACAGCAGTCGACGGTTCGGGGAG
GGCGTCGGCGCACCAAGTATAGAGGCGAGGCTTGGACTCTTCAGTTGCTG
ATGGTGCTCTCGTCGTTTCTTGTGGCTCGACGCAGCCACCGGCGTGCGGT
TCTCCGAGTCCTCCTCCTGCCGCAGATACTGCGCCAGGTCATTGACCTCG
GCATCGACATTGGTTGTTGCCATGCCCGTCGCCCACAGTAAACTTTGAAG
TCCTGCTTGTGCAGCTGCTGGTCGTTGCCGCGAGAACGACTTGCGGCGAG
CGAAGAAAAAAGCGAGCGGGGGTGATGTGTCTAGGTGCCCTTGCCTGCCT
GTCGGATTGAGCTGGAAGTTGAGGTTCGTATTTGTTTTGCGTGGTGAGCA
TGGTAGACTAAAGTAAAAAGCAAAGGCCTTAGGCCTGTTATTTAATAGGG
TGCGCAATTGATCATAAGCACTGAAAAGCCGTTACGACAACAAAAGCTTG
CCCGTCGTCTTTCTCTTTCGGAAACCCCAGTCTCGACTAGCACAGTTCAA
GGCCCGGGACAAAAGTGCTGATCTTGGGCCTCACCCTATTTACGGATGCG
GCGCCTGTGTGGTTATCCTAATCACTTCCTCTTGCCCATTTCACACGAGA
CCCATGGCCCATCTGCTTCTTTGATCGGGACAGCACGCACTCATCTCGGG
CAAGTTACTCGTGGCGAGACATATCACCCAACCCTACTACCATGTGGTGC
TGGGAACATGCCGACTCCGTCTCATTCATATTCATCGGCCGC

protein sequence of jgi.p|Nanoce1779_2|580828

>mRNA_2583-protein ID=mRNA_2583-protein|Name=jgi.p|Nanoce1779_2|580828|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MGLSMSLPDFWLRLLEVLPVSFSCLGVNDDGLFSTSINRRRPLLLVALLA
PLLLPPCFFSGFVVVKGERKIGLTPILPMGVMLSLSPALLALMKLLLATL
SFLSEARDCARS*

mRNA from alignment at scaffold_5:702663..704904+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2583 ID=mRNA_2583|Name=jgi.p|Nanoce1779_2|580828|organism=Nannochloropsis oceanica|type=mRNA|length=2242bp|location=Sequence derived from alignment at scaffold_5:702663..704904+ (Nannochloropsis oceanica)
GAAGGCGGAGATTGAACAGACCGAGGAATGGTAGGAAAGCCATCCCAACG
CTCCGCTGGCTTTGGGTGGTGGTGGTGCTGCTGCTGGTGCTGCTGCAGTT
GGCGCGGAGGAGACACGGGGGGCTCCATCGTGTAGATAGACCAGCGTGGC
TGCTGCAATAGCTGCTGTGCGCTCTCCATTACCGGTACGTCCATCTTATT
GGTGCCGATTTGCCGAGAAGACGAGGCGAAGAAGGAGGAGATTGAAGACG
TCTGCGAATGAAAGCGCACTTCCCCACTACGCCCGGCCTTCCCTTTTCCC
TTCACTTCCGCCAACGATAACGACGCCGACTTGTCGGACAAGTCAGCAAT
AGAAAGGAATTCACCACCATTATCTCCCTCCTTATGTATCGTAGACAGAT
ATCCTTCTTCTCTTCCCTCCCCTCGACGAGAAATTTTGTCGTGTTGCTGC
TGCTGCCGCTGCTGCGCGCCAGGCCGTCCGGAGAGATCCTGACACTGTGT
GTCCTGCCACACAAACTTCTTGACTGCAGAAAGCATGCGATCGCTAAACC
AACTCTTAATCCTCTCTTTCTCAACGACGTCAGGTGTATGGATTGCGTGA
GCCCGGGATATCAGGGCATCTACTGACGGGGTGCTTGGCGCTGGTGCTTG
GAGTCCGGGTGGGGGAGGAGAGATGGGAGAGATAGGAGAAGGTGCGGGGA
CACGGGGAAATGTAGGCATGGGGGAGGCGAAGGTCCGGAGTGGCTGACAA
GAGGGCTGAATAGGACGGGCGAGGGTAGGAGAGCCGGAGGAGGAGAATTG
TCGTGTCGTTGACAACGTGGGGGACATGCCTTTGACACTTGTGGTAGAGG
AAGTGAGTAGAGGGGAAGAGGCAGTAGACGCGTTGGTGGGTGTGATATTC
TCATATTCTACTCCTTCTTGTTGTTGCTCGTCGCTTGCATGGTTCCGTCG
ACTTCCTTTTTCACCTGCTGCTACTCCGTTTTCTTCTACCTCCGCTATTT
TTTCGTCCAAATACAGGGCCGCTTCCGCTCCCTCTTCATCGTCATCATTA
TCGCTCGAATCAGAGCTCAAATAAAATATGGGACTATCCATGTCCCTACC
AGACTTCTGGCTGAGGCTACTGGAGGTACTGCCGGTTTCATTTTCGTGCT
TGGGGGTCAATGATGACGGACTCTTCTCCACATCTATCAACCGACGACGA
CCGCTGCTGCTTGTCGCACTCCTGGCACCGCTGCTGCTACCACCGTGTTT
TTTTTCGGGTTTTGTCGTGGTCAAAGGGGAACGAAAGATAGGGCTGACAC
CCATCTTGCCGATGGGTGTCATGTTGTCGTTGTCGCCCGCGCTGCTGGCA
CTGATGAAGCTGCTGTTGGCCACCCTTTCCTTTTTGTCCGAGGCAAGAGA
CTGCGCTCGGTCGTGATGGTTGCTCAAGTCGTCAAGGCTTTGAAAGGGTG
CCCGCTGCGGGTCCCGGTCACGGTCAAACAGCAGTCGACGGTTCGGGGAG
GGCGTCGGCGCACCAAGTATAGAGGCGAGGCTTGGACTCTTCAGTTGCTG
ATGGTGCTCTCGTCGTTTCTTGTGGCTCGACGCAGCCACCGGCGTGCGGT
TCTCCGAGTCCTCCTCCTGCCGCAGATACTGCGCCAGGTCATTGACCTCG
GCATCGACATTGGTTGTTGCCATGCCCGTCGCCCACAGTAAACTTTGAAG
TCCTGCTTGTGCAGCTGCTGGTCGTTGCCGCGAGAACGACTTGCGGCGAG
CGAAGAAAAAAGCGAGCGGGGGTGATGTGTCTAGGTGCCCTTGCCTGCCT
GTCGGATTGAGCTGGAAGTTGAGGTTCGTATTTGTTTTGCGTGGTGAGCA
TGGTAGACTAAAGTAAAAAGCAAAGGCCTTAGGCCTGTTATTTAATAGGG
TGCGCAATTGATCATAAGCACTGAAAAGCCGTTACGACAACAAAAGCTTG
CCCGTCGTCTTTCTCTTTCGGAAACCCCAGTCTCGACTAGCACAGTTCAA
GGCCCGGGACAAAAGTGCTGATCTTGGGCCTCACCCTATTTACGGATGCG
GCGCCTGTGTGGTTATCCTAATCACTTCCTCTTGCCCATTTCACACGAGA
CCCATGGCCCATCTGCTTCTTTGATCGGGACAGCACGCACTCATCTCGGG
CAAGTTACTCGTGGCGAGACATATCACCCAACCCTACTACCATGTGGTGC
TGGGAACATGCCGACTCCGTCTCATTCATATTCATCGGCCGC

Coding sequence (CDS) from alignment at scaffold_5:702663..704904+

>mRNA_2583 ID=mRNA_2583|Name=jgi.p|Nanoce1779_2|580828|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_5:702663..704904+ (Nannochloropsis oceanica)
ATGGGACTATCCATGTCCCTACCAGACTTCTGGCTGAGGCTACTGGAGGT
ACTGCCGGTTTCATTTTCGTGCTTGGGGGTCAATGATGACGGACTCTTCT
CCACATCTATCAACCGACGACGACCGCTGCTGCTTGTCGCACTCCTGGCA
CCGCTGCTGCTACCACCGTGTTTTTTTTCGGGTTTTGTCGTGGTCAAAGG
GGAACGAAAGATAGGGCTGACACCCATCTTGCCGATGGGTGTCATGTTGT
CGTTGTCGCCCGCGCTGCTGGCACTGATGAAGCTGCTGTTGGCCACCCTT
TCCTTTTTGTCCGAGGCAAGAGACTGCGCTCGGTCGTGA

Synonyms

Publications