jgi.p|Nanoce1779_2|580826, mRNA_2582 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580826
Unique NamemRNA_2582
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2389
Alignment locationscaffold_5:700359..702747 -

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Properties
Property NameValue
TranscriptId580912
TrackFilteredModels2
ProteinId580826
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:700359..702747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580826gene_2582Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580826mRNA_2582-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2582CDS_2582Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2582 ID=mRNA_2582|Name=jgi.p|Nanoce1779_2|580826|organism=Nannochloropsis oceanica|type=mRNA|length=2389bp
AGCAGCAGCACCACCACCACCCAAAGCCAGCGGAGCGTTGGGATGGCTTT
CCTACCATTCCTCGGTCTGTTCAATCTCCGCCTTCTTCGACCGTCAGTTC
CTCCGGTGACTTAACCAAAGCGGTCTCCTCCCAAGCAGCAGCAGCAGCAG
CACGCGCAGCGGCTAGGGCGGCAGCAGTAGCAACAGCAGCAGCAATAGCT
GTATCCATTTCGGCGTCTTCAAGCAGAGAAAGACCCTTTTCTGCTTCTGC
TGCCGCTGCGGTCCCGTCCTCCTCTCTCTCCTCCTCATTTTCCTCGTCTT
CCTCCTGTGTGTCTGCCCCCTCCCTTTCTGCTGCAGAAAGGAAAAAGGAG
CCAGAGGGAGACTCCCTCTTTTCGATCTCTCTTCCTCTTTTGACCGGGGC
TCGCCGTGGGTGGGGGGCAGACAGTGCCTGTTCGCGGCATCGACCCGAAC
TACGCAGTGGTCACGGGCAGGGGAACGAGAAGGAGGACGAAGGCCGAACG
CAGGTCCGACGGCGGATGCTGGCTCTTTCCTCTACAGGTGACGATATCAG
GAGGGACAGTGAGAGCGGCAGCAGCAGCAGTAGCATGAATGGTACGGGCA
TGAGGGAAGGCAGGAAGGGCAACTGCAGCAACAGCGCTAGCAGTAGTGCC
AGCCTCAGCAGTAGAGCGATGGTCACCACCGCATTTCCAACGAGTCCCAA
GTCGGTGCTGGAAGTGCTAGCTATGGCTTCCTCCTCCCCTACCTCCTTCG
CTGCCTCCCTTGCGTCCTGCTCTTCCTCTATCTCCTCCTTCCGTCCCGCT
TCTTCCCGTGGGCAGATACCTTTCCATTTTAGCATGAGCAGCGATGAAGA
ACAGGAGCAAGAGCAAGAAGTTGCAGAGGCAGCAGAGCGGGGCCTGTCAC
CAAGCCGCCCTCCTCCACCAACCGCACGGTTGCCCCATTTATATTCGCCT
CTGCAGCCTGCTGCTTCTTTGCCGCAAAGCGAGGAAGGTAGAAAGAAAGG
ACTAACAACTCATCGAACATTTGAAGGATTACTTCAGGAAAGCGATGTGG
AGGTGTCTCGCCGCAATTCTGCACCGTCCTCTTTTTCCTCCTCCTTTTCC
CCGTCGTCCATCTCCTCTTCCTCAACTTTATCGCCTTCTGCACCTTCACC
TTCGTACCCCAACAAGCCGACTTGTATTACAACAATCGCCGCTACTACTG
CTGCTCGTCCTTCCCCTCCAGTCATGCCCGACGTTTCCTTGCCAATCACT
TGGCGCGAAGTCTTAGTGGGCTGTGCCGCTTCCCGTGAACTTCAACTCCG
AAACTGTCGGCCTGGCCCTTGCATTGTTCACGTTGCCTTTACCTTCCATC
ATCAGGAGGACGAGGACGAAGAAGGGGGGGAGGCCAAGAGGGAGAAGGAG
GGTTGTTTTCACGTGAGCAGCTGCGGCAAGGTCCGGGAGAAGGACGAGGA
GGTAGTGGGTGCTGACGGCATTCTACGTTTGTTGATTACCTTTCTTCCTG
TGCACTCAGGCTTGCATCGTGCCACGTTGCATTTGCGTGTGGGTGTGCCT
GTTGAGGAGGGTAGAGGAGCGGGAGAAGGAAAAAGAGGAGGGGGAAGGGA
AGAAGGGATGTACGACGTTGACCTGGTGGGAACGGCGACTGACGGAGAAG
TGGGGACAGCGGGAGGGATTGGAGGAGTGGTTAAGACACCCTTGCAGCTG
GAGGTGAATTTTAGTGATCGAAGCGCCAAAAACAGATATTTGAGGAGGCT
CTACCCCAGCAGGAAGGGAAAGGATGCGGCAGTAGCAGTGGGCGCGAAGT
CATTAAGAATCTCGGATGAGTCCCCCATGTCTCCAACACACTCGACACCA
ACACAACCATCGTCCTCCAATTCCGCCTTTTTATCTTCTTCTTCCGGGAC
CCCTGGGGTAGGTTTTGCTCAAACCTTTATCAACTTTGGGAAGCAACCAC
TGGGCAGCGTGAACATCCAGAGGGTGCGGCTGTGTAACCCTCTTTCCGCG
CCGCAGCTGGTTGTGTTGGAATCTGCCTCCCTTCCCTTCGTCTTGGCCCA
TCGGGTCATAAAGCTGAGACCGAAGGCTTTTGTCAAGCTTCCTTTGCGGT
TTGTGCCGGTGCATCGTGGTGAGTTCGCAGTTATTTTGCGGGCAAATGTG
CATGCTTTACACGGGGAGGGGCAGGGGATTAAAAATGGTGGGAGTAGCCG
GGACATAACGCTGGAATTGCGTGGACAAGTGGAGTGAAAGAAGGGGTGTG
GTAGCTGAGTATCGTATGTCAGTGGTTCTAAAAAAGAAGTCAAAAGGGGA
AGCAATTGTAAGCAAAAATGAAGAGATCAGAAGTACTAAGCGCTGTGTCT
TGGAGCTTACTTTGGCGCAATTTACGTGCTCCCTTGACC
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protein sequence of jgi.p|Nanoce1779_2|580826

>mRNA_2582-protein ID=mRNA_2582-protein|Name=jgi.p|Nanoce1779_2|580826|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MLALSSTGDDIRRDSESGSSSSSMNGTGMREGRKGNCSNSASSSASLSSR
AMVTTAFPTSPKSVLEVLAMASSSPTSFAASLASCSSSISSFRPASSRGQ
IPFHFSMSSDEEQEQEQEVAEAAERGLSPSRPPPPTARLPHLYSPLQPAA
SLPQSEEGRKKGLTTHRTFEGLLQESDVEVSRRNSAPSSFSSSFSPSSIS
SSSTLSPSAPSPSYPNKPTCITTIAATTAARPSPPVMPDVSLPITWREVL
VGCAASRELQLRNCRPGPCIVHVAFTFHHQEDEDEEGGEAKREKEGCFHV
SSCGKVREKDEEVVGADGILRLLITFLPVHSGLHRATLHLRVGVPVEEGR
GAGEGKRGGGREEGMYDVDLVGTATDGEVGTAGGIGGVVKTPLQLEVNFS
DRSAKNRYLRRLYPSRKGKDAAVAVGAKSLRISDESPMSPTHSTPTQPSS
SNSAFLSSSSGTPGVGFAQTFINFGKQPLGSVNIQRVRLCNPLSAPQLVV
LESASLPFVLAHRVIKLRPKAFVKLPLRFVPVHRGEFAVILRANVHALHG
EGQGIKNGGSSRDITLELRGQVE*
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mRNA from alignment at scaffold_5:700359..702747-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2582 ID=mRNA_2582|Name=jgi.p|Nanoce1779_2|580826|organism=Nannochloropsis oceanica|type=mRNA|length=2389bp|location=Sequence derived from alignment at scaffold_5:700359..702747- (Nannochloropsis oceanica)
AGCAGCAGCACCACCACCACCCAAAGCCAGCGGAGCGTTGGGATGGCTTT
CCTACCATTCCTCGGTCTGTTCAATCTCCGCCTTCTTCGACCGTCAGTTC
CTCCGGTGACTTAACCAAAGCGGTCTCCTCCCAAGCAGCAGCAGCAGCAG
CACGCGCAGCGGCTAGGGCGGCAGCAGTAGCAACAGCAGCAGCAATAGCT
GTATCCATTTCGGCGTCTTCAAGCAGAGAAAGACCCTTTTCTGCTTCTGC
TGCCGCTGCGGTCCCGTCCTCCTCTCTCTCCTCCTCATTTTCCTCGTCTT
CCTCCTGTGTGTCTGCCCCCTCCCTTTCTGCTGCAGAAAGGAAAAAGGAG
CCAGAGGGAGACTCCCTCTTTTCGATCTCTCTTCCTCTTTTGACCGGGGC
TCGCCGTGGGTGGGGGGCAGACAGTGCCTGTTCGCGGCATCGACCCGAAC
TACGCAGTGGTCACGGGCAGGGGAACGAGAAGGAGGACGAAGGCCGAACG
CAGGTCCGACGGCGGATGCTGGCTCTTTCCTCTACAGGTGACGATATCAG
GAGGGACAGTGAGAGCGGCAGCAGCAGCAGTAGCATGAATGGTACGGGCA
TGAGGGAAGGCAGGAAGGGCAACTGCAGCAACAGCGCTAGCAGTAGTGCC
AGCCTCAGCAGTAGAGCGATGGTCACCACCGCATTTCCAACGAGTCCCAA
GTCGGTGCTGGAAGTGCTAGCTATGGCTTCCTCCTCCCCTACCTCCTTCG
CTGCCTCCCTTGCGTCCTGCTCTTCCTCTATCTCCTCCTTCCGTCCCGCT
TCTTCCCGTGGGCAGATACCTTTCCATTTTAGCATGAGCAGCGATGAAGA
ACAGGAGCAAGAGCAAGAAGTTGCAGAGGCAGCAGAGCGGGGCCTGTCAC
CAAGCCGCCCTCCTCCACCAACCGCACGGTTGCCCCATTTATATTCGCCT
CTGCAGCCTGCTGCTTCTTTGCCGCAAAGCGAGGAAGGTAGAAAGAAAGG
ACTAACAACTCATCGAACATTTGAAGGATTACTTCAGGAAAGCGATGTGG
AGGTGTCTCGCCGCAATTCTGCACCGTCCTCTTTTTCCTCCTCCTTTTCC
CCGTCGTCCATCTCCTCTTCCTCAACTTTATCGCCTTCTGCACCTTCACC
TTCGTACCCCAACAAGCCGACTTGTATTACAACAATCGCCGCTACTACTG
CTGCTCGTCCTTCCCCTCCAGTCATGCCCGACGTTTCCTTGCCAATCACT
TGGCGCGAAGTCTTAGTGGGCTGTGCCGCTTCCCGTGAACTTCAACTCCG
AAACTGTCGGCCTGGCCCTTGCATTGTTCACGTTGCCTTTACCTTCCATC
ATCAGGAGGACGAGGACGAAGAAGGGGGGGAGGCCAAGAGGGAGAAGGAG
GGTTGTTTTCACGTGAGCAGCTGCGGCAAGGTCCGGGAGAAGGACGAGGA
GGTAGTGGGTGCTGACGGCATTCTACGTTTGTTGATTACCTTTCTTCCTG
TGCACTCAGGCTTGCATCGTGCCACGTTGCATTTGCGTGTGGGTGTGCCT
GTTGAGGAGGGTAGAGGAGCGGGAGAAGGAAAAAGAGGAGGGGGAAGGGA
AGAAGGGATGTACGACGTTGACCTGGTGGGAACGGCGACTGACGGAGAAG
TGGGGACAGCGGGAGGGATTGGAGGAGTGGTTAAGACACCCTTGCAGCTG
GAGGTGAATTTTAGTGATCGAAGCGCCAAAAACAGATATTTGAGGAGGCT
CTACCCCAGCAGGAAGGGAAAGGATGCGGCAGTAGCAGTGGGCGCGAAGT
CATTAAGAATCTCGGATGAGTCCCCCATGTCTCCAACACACTCGACACCA
ACACAACCATCGTCCTCCAATTCCGCCTTTTTATCTTCTTCTTCCGGGAC
CCCTGGGGTAGGTTTTGCTCAAACCTTTATCAACTTTGGGAAGCAACCAC
TGGGCAGCGTGAACATCCAGAGGGTGCGGCTGTGTAACCCTCTTTCCGCG
CCGCAGCTGGTTGTGTTGGAATCTGCCTCCCTTCCCTTCGTCTTGGCCCA
TCGGGTCATAAAGCTGAGACCGAAGGCTTTTGTCAAGCTTCCTTTGCGGT
TTGTGCCGGTGCATCGTGGTGAGTTCGCAGTTATTTTGCGGGCAAATGTG
CATGCTTTACACGGGGAGGGGCAGGGGATTAAAAATGGTGGGAGTAGCCG
GGACATAACGCTGGAATTGCGTGGACAAGTGGAGTGAAAGAAGGGGTGTG
GTAGCTGAGTATCGTATGTCAGTGGTTCTAAAAAAGAAGTCAAAAGGGGA
AGCAATTGTAAGCAAAAATGAAGAGATCAGAAGTACTAAGCGCTGTGTCT
TGGAGCTTACTTTGGCGCAATTTACGTGCTCCCTTGACC
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Coding sequence (CDS) from alignment at scaffold_5:700359..702747-

>mRNA_2582 ID=mRNA_2582|Name=jgi.p|Nanoce1779_2|580826|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_5:700359..702747- (Nannochloropsis oceanica)
ATGCTGGCTCTTTCCTCTACAGGTGACGATATCAGGAGGGACAGTGAGAG
CGGCAGCAGCAGCAGTAGCATGAATGGTACGGGCATGAGGGAAGGCAGGA
AGGGCAACTGCAGCAACAGCGCTAGCAGTAGTGCCAGCCTCAGCAGTAGA
GCGATGGTCACCACCGCATTTCCAACGAGTCCCAAGTCGGTGCTGGAAGT
GCTAGCTATGGCTTCCTCCTCCCCTACCTCCTTCGCTGCCTCCCTTGCGT
CCTGCTCTTCCTCTATCTCCTCCTTCCGTCCCGCTTCTTCCCGTGGGCAG
ATACCTTTCCATTTTAGCATGAGCAGCGATGAAGAACAGGAGCAAGAGCA
AGAAGTTGCAGAGGCAGCAGAGCGGGGCCTGTCACCAAGCCGCCCTCCTC
CACCAACCGCACGGTTGCCCCATTTATATTCGCCTCTGCAGCCTGCTGCT
TCTTTGCCGCAAAGCGAGGAAGGTAGAAAGAAAGGACTAACAACTCATCG
AACATTTGAAGGATTACTTCAGGAAAGCGATGTGGAGGTGTCTCGCCGCA
ATTCTGCACCGTCCTCTTTTTCCTCCTCCTTTTCCCCGTCGTCCATCTCC
TCTTCCTCAACTTTATCGCCTTCTGCACCTTCACCTTCGTACCCCAACAA
GCCGACTTGTATTACAACAATCGCCGCTACTACTGCTGCTCGTCCTTCCC
CTCCAGTCATGCCCGACGTTTCCTTGCCAATCACTTGGCGCGAAGTCTTA
GTGGGCTGTGCCGCTTCCCGTGAACTTCAACTCCGAAACTGTCGGCCTGG
CCCTTGCATTGTTCACGTTGCCTTTACCTTCCATCATCAGGAGGACGAGG
ACGAAGAAGGGGGGGAGGCCAAGAGGGAGAAGGAGGGTTGTTTTCACGTG
AGCAGCTGCGGCAAGGTCCGGGAGAAGGACGAGGAGGTAGTGGGTGCTGA
CGGCATTCTACGTTTGTTGATTACCTTTCTTCCTGTGCACTCAGGCTTGC
ATCGTGCCACGTTGCATTTGCGTGTGGGTGTGCCTGTTGAGGAGGGTAGA
GGAGCGGGAGAAGGAAAAAGAGGAGGGGGAAGGGAAGAAGGGATGTACGA
CGTTGACCTGGTGGGAACGGCGACTGACGGAGAAGTGGGGACAGCGGGAG
GGATTGGAGGAGTGGTTAAGACACCCTTGCAGCTGGAGGTGAATTTTAGT
GATCGAAGCGCCAAAAACAGATATTTGAGGAGGCTCTACCCCAGCAGGAA
GGGAAAGGATGCGGCAGTAGCAGTGGGCGCGAAGTCATTAAGAATCTCGG
ATGAGTCCCCCATGTCTCCAACACACTCGACACCAACACAACCATCGTCC
TCCAATTCCGCCTTTTTATCTTCTTCTTCCGGGACCCCTGGGGTAGGTTT
TGCTCAAACCTTTATCAACTTTGGGAAGCAACCACTGGGCAGCGTGAACA
TCCAGAGGGTGCGGCTGTGTAACCCTCTTTCCGCGCCGCAGCTGGTTGTG
TTGGAATCTGCCTCCCTTCCCTTCGTCTTGGCCCATCGGGTCATAAAGCT
GAGACCGAAGGCTTTTGTCAAGCTTCCTTTGCGGTTTGTGCCGGTGCATC
GTGGTGAGTTCGCAGTTATTTTGCGGGCAAATGTGCATGCTTTACACGGG
GAGGGGCAGGGGATTAAAAATGGTGGGAGTAGCCGGGACATAACGCTGGA
ATTGCGTGGACAAGTGGAGTGA
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Synonyms
Publications