jgi.p|Nanoce1779_2|517634, mRNA_2580 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|517634
Unique NamemRNA_2580
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length333
Alignment locationscaffold_5:698266..698598 -

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Properties
Property NameValue
TranscriptId517720
TrackFilteredModels2
ProteinId517634
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:698266..698598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|517634gene_2580Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2580CDS_2580Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|517634mRNA_2580-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2580 ID=mRNA_2580|Name=jgi.p|Nanoce1779_2|517634|organism=Nannochloropsis oceanica|type=mRNA|length=333bp
TTTTCCTGCAACCACTGCCAGAAAACATTCACCCTTAAGGGAAATTTGAA
ACGACACCTCCTCACACACGGGGGCGTCCGTCCCTTCTCCTGCTCCATCT
GCGAAAAAACCTTCTCGCGGAAAGCCGACCTGGAAATCCACGTCCGGGTC
CACACAGGCGAGAGACCCTACACCTGCCCCTGGATGAACTGCGGGCGGCA
ATTCGCCCGGATTTCTGACTTGAGGTCTCACGAGCGAACACACAGTGGCT
TGAAGGGTTTTTTGTGTCCCTATTCGGGGTGTGGGAGGCGGTTTGCAAGG
AGATACGACATGAACAAGCATGCGAAGGTGCAC
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protein sequence of jgi.p|Nanoce1779_2|517634

>mRNA_2580-protein ID=mRNA_2580-protein|Name=jgi.p|Nanoce1779_2|517634|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
FSCNHCQKTFTLKGNLKRHLLTHGGVRPFSCSICEKTFSRKADLEIHVRV
HTGERPYTCPWMNCGRQFARISDLRSHERTHSGLKGFLCPYSGCGRRFAR
RYDMNKHAKVH
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mRNA from alignment at scaffold_5:698266..698598-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2580 ID=mRNA_2580|Name=jgi.p|Nanoce1779_2|517634|organism=Nannochloropsis oceanica|type=mRNA|length=333bp|location=Sequence derived from alignment at scaffold_5:698266..698598- (Nannochloropsis oceanica)
TTTTCCTGCAACCACTGCCAGAAAACATTCACCCTTAAGGGAAATTTGAA
ACGACACCTCCTCACACACGGGGGCGTCCGTCCCTTCTCCTGCTCCATCT
GCGAAAAAACCTTCTCGCGGAAAGCCGACCTGGAAATCCACGTCCGGGTC
CACACAGGCGAGAGACCCTACACCTGCCCCTGGATGAACTGCGGGCGGCA
ATTCGCCCGGATTTCTGACTTGAGGTCTCACGAGCGAACACACAGTGGCT
TGAAGGGTTTTTTGTGTCCCTATTCGGGGTGTGGGAGGCGGTTTGCAAGG
AGATACGACATGAACAAGCATGCGAAGGTGCAC
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Coding sequence (CDS) from alignment at scaffold_5:698266..698598-

>mRNA_2580 ID=mRNA_2580|Name=jgi.p|Nanoce1779_2|517634|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_5:698266..698598- (Nannochloropsis oceanica)
TTTTCCTGCAACCACTGCCAGAAAACATTCACCCTTAAGGGAAATTTGAA
ACGACACCTCCTCACACACGGGGGCGTCCGTCCCTTCTCCTGCTCCATCT
GCGAAAAAACCTTCTCGCGGAAAGCCGACCTGGAAATCCACGTCCGGGTC
CACACAGGCGAGAGACCCTACACCTGCCCCTGGATGAACTGCGGGCGGCA
ATTCGCCCGGATTTCTGACTTGAGGTCTCACGAGCGAACACACAGTGGCT
TGAAGGGTTTTTTGTGTCCCTATTCGGGGTGTGGGAGGCGGTTTGCAAGG
AGATACGACATGAACAAGCATGCGAAGGTGCAC
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Synonyms
Publications