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Properties
| Property Name | Value |
|---|
| TranscriptId | 576817 |
| Track | FilteredModels2 |
| ProteinId | 576731 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:640949..642440 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_258 ID=mRNA_258|Name=jgi.p|Nanoce1779_2|576731|organism=Nannochloropsis oceanica|type=mRNA|length=1492bp
CAGACACACCATACAGCGCCATGGCTCGCAACGACTACGAGTCCATCAAT
GACACGCGCGGGGCCGTGTGGGGCATTGAAGCCGGCGCGTCGGAGAACAA
GGACCTCTACCAGGCGGACTCCGAAAATCCTTTTGGAAGGAATGATGTCC
TCATTCACCGCAGTGCTTCGTTCCTTGCGCAATCCGATCCCTCACGCCGA
CATTTCCAGTTGTGGATCTTGGGCCCCGCCGTCACGTTGCTGGTGGTGAT
TGCCGTAGCGGTGGCCGTGATCTCGCAGAGTGCCGTTCCTTTGCCTGCTT
CCGCGGGTAGCAGCCCCGTAATGCCCACCCTAGGCGCGGAGGGTCCTTCC
TCTGGTGGCCGCATCAGCGGCATGCTTCCTTCGACTTATGCCATGGTGGA
CAGCAGCGGGGACACGCGCCGGGAAGGTGCTGCGGACTCCATCAACCCCA
CCACGACGCCGGCGCAAAAACCGGGATCCAAGATGAATACCACGACCGTG
CTTTCCTGCCTTGAGGACAAATGCAAGCCCTTCGTTAACCAGCTTGGGAA
AAGCTGGGATGAATTAGCCAATATCAACCTCTTGCGCTGCTTGGTTTCTT
CTGCGTTTAATAAAACGGAGGCCGGTGGGTGCTTTGATAACGCGAGGCCT
TCGGATCTGAGGGATGATTTGGTGGCGTGCGCAGGATGCAACAAATGCAT
CAAGCTCAAGGACCAGGCCGGTGTTGACAAGGCTTGTGCCAAGTACAACG
CGTGGGCGGCCAAGCAGAAAGCTGATGCAGCTGCCCCTACCTTGCAGGCT
GCCGTAGAGGAGGAGAGTGTAGAGGACAACCTAGTGCTGCTACAGCAGAG
TCCTACTGCCGACTCTCTGGCTTCCAACTTGCCCGCGAGTTTGAAGGAAA
AATTCTGTAGCCAGTACTGGTGTCCTTAAAAGGGAAGGAGGAAAGATGAT
AGAAATGTGGATGTGGTATATTGAGGAGAAATCAAGATGAAACAAGCAAG
TAGTCAAACAGCGAGTGTGCCGAGACCCGGAGATCTGGCACGTCTCCCTC
CTCCCTGGCCTGTGAGTATGTGAAGAATGTAGTCGGAAGTGGAAGTGAGA
AAAAGAGAAGCGGAAGTGTACACAAGGACAGTTATCAGGAATAGGAAGCC
AAGGTAGGGACGGAGTGGGAAGAAATGTCGGAGAAAGAGAAGAAGCGTGG
TGTGTGTGAGAAGAGCGACGAGCTGCCACCATCCGGCTTCTTTGTTGTAT
TCTTCCCTGGTAAACAATAATGACGAAAAGAAAGGGTGTGGGTTAAGGAG
ACTGAAAATGTTTGCCTGCGTGCGTGCGTAATACAACCAAAGAGAGGTCC
AGATAGGACAGGGGATGGGTTTTGAGTGAAGTCAAACAAAAGAGGGAATG
ACAGCAAAGGGGGTATTTAATAATTAATTGGACTGAATAACACGACAAAA
AGCAAGTGATGCATGGCGACGTGCGCAATATACACGTTTGGA back to topprotein sequence of jgi.p|Nanoce1779_2|576731 >mRNA_258-protein ID=mRNA_258-protein|Name=jgi.p|Nanoce1779_2|576731|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MARNDYESINDTRGAVWGIEAGASENKDLYQADSENPFGRNDVLIHRSAS
FLAQSDPSRRHFQLWILGPAVTLLVVIAVAVAVISQSAVPLPASAGSSPV
MPTLGAEGPSSGGRISGMLPSTYAMVDSSGDTRREGAADSINPTTTPAQK
PGSKMNTTTVLSCLEDKCKPFVNQLGKSWDELANINLLRCLVSSAFNKTE
AGGCFDNARPSDLRDDLVACAGCNKCIKLKDQAGVDKACAKYNAWAAKQK
ADAAAPTLQAAVEEESVEDNLVLLQQSPTADSLASNLPASLKEKFCSQYW
CP* back to topmRNA from alignment at scaffold_3:640949..642440+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_258 ID=mRNA_258|Name=jgi.p|Nanoce1779_2|576731|organism=Nannochloropsis oceanica|type=mRNA|length=1492bp|location=Sequence derived from alignment at scaffold_3:640949..642440+ (Nannochloropsis oceanica)
CAGACACACCATACAGCGCCATGGCTCGCAACGACTACGAGTCCATCAAT
GACACGCGCGGGGCCGTGTGGGGCATTGAAGCCGGCGCGTCGGAGAACAA
GGACCTCTACCAGGCGGACTCCGAAAATCCTTTTGGAAGGAATGATGTCC
TCATTCACCGCAGTGCTTCGTTCCTTGCGCAATCCGATCCCTCACGCCGA
CATTTCCAGTTGTGGATCTTGGGCCCCGCCGTCACGTTGCTGGTGGTGAT
TGCCGTAGCGGTGGCCGTGATCTCGCAGAGTGCCGTTCCTTTGCCTGCTT
CCGCGGGTAGCAGCCCCGTAATGCCCACCCTAGGCGCGGAGGGTCCTTCC
TCTGGTGGCCGCATCAGCGGCATGCTTCCTTCGACTTATGCCATGGTGGA
CAGCAGCGGGGACACGCGCCGGGAAGGTGCTGCGGACTCCATCAACCCCA
CCACGACGCCGGCGCAAAAACCGGGATCCAAGATGAATACCACGACCGTG
CTTTCCTGCCTTGAGGACAAATGCAAGCCCTTCGTTAACCAGCTTGGGAA
AAGCTGGGATGAATTAGCCAATATCAACCTCTTGCGCTGCTTGGTTTCTT
CTGCGTTTAATAAAACGGAGGCCGGTGGGTGCTTTGATAACGCGAGGCCT
TCGGATCTGAGGGATGATTTGGTGGCGTGCGCAGGATGCAACAAATGCAT
CAAGCTCAAGGACCAGGCCGGTGTTGACAAGGCTTGTGCCAAGTACAACG
CGTGGGCGGCCAAGCAGAAAGCTGATGCAGCTGCCCCTACCTTGCAGGCT
GCCGTAGAGGAGGAGAGTGTAGAGGACAACCTAGTGCTGCTACAGCAGAG
TCCTACTGCCGACTCTCTGGCTTCCAACTTGCCCGCGAGTTTGAAGGAAA
AATTCTGTAGCCAGTACTGGTGTCCTTAAAAGGGAAGGAGGAAAGATGAT
AGAAATGTGGATGTGGTATATTGAGGAGAAATCAAGATGAAACAAGCAAG
TAGTCAAACAGCGAGTGTGCCGAGACCCGGAGATCTGGCACGTCTCCCTC
CTCCCTGGCCTGTGAGTATGTGAAGAATGTAGTCGGAAGTGGAAGTGAGA
AAAAGAGAAGCGGAAGTGTACACAAGGACAGTTATCAGGAATAGGAAGCC
AAGGTAGGGACGGAGTGGGAAGAAATGTCGGAGAAAGAGAAGAAGCGTGG
TGTGTGTGAGAAGAGCGACGAGCTGCCACCATCCGGCTTCTTTGTTGTAT
TCTTCCCTGGTAAACAATAATGACGAAAAGAAAGGGTGTGGGTTAAGGAG
ACTGAAAATGTTTGCCTGCGTGCGTGCGTAATACAACCAAAGAGAGGTCC
AGATAGGACAGGGGATGGGTTTTGAGTGAAGTCAAACAAAAGAGGGAATG
ACAGCAAAGGGGGTATTTAATAATTAATTGGACTGAATAACACGACAAAA
AGCAAGTGATGCATGGCGACGTGCGCAATATACACGTTTGGA back to topCoding sequence (CDS) from alignment at scaffold_3:640949..642440+ >mRNA_258 ID=mRNA_258|Name=jgi.p|Nanoce1779_2|576731|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_3:640949..642440+ (Nannochloropsis oceanica)
ATGGCTCGCAACGACTACGAGTCCATCAATGACACGCGCGGGGCCGTGTG
GGGCATTGAAGCCGGCGCGTCGGAGAACAAGGACCTCTACCAGGCGGACT
CCGAAAATCCTTTTGGAAGGAATGATGTCCTCATTCACCGCAGTGCTTCG
TTCCTTGCGCAATCCGATCCCTCACGCCGACATTTCCAGTTGTGGATCTT
GGGCCCCGCCGTCACGTTGCTGGTGGTGATTGCCGTAGCGGTGGCCGTGA
TCTCGCAGAGTGCCGTTCCTTTGCCTGCTTCCGCGGGTAGCAGCCCCGTA
ATGCCCACCCTAGGCGCGGAGGGTCCTTCCTCTGGTGGCCGCATCAGCGG
CATGCTTCCTTCGACTTATGCCATGGTGGACAGCAGCGGGGACACGCGCC
GGGAAGGTGCTGCGGACTCCATCAACCCCACCACGACGCCGGCGCAAAAA
CCGGGATCCAAGATGAATACCACGACCGTGCTTTCCTGCCTTGAGGACAA
ATGCAAGCCCTTCGTTAACCAGCTTGGGAAAAGCTGGGATGAATTAGCCA
ATATCAACCTCTTGCGCTGCTTGGTTTCTTCTGCGTTTAATAAAACGGAG
GCCGGTGGGTGCTTTGATAACGCGAGGCCTTCGGATCTGAGGGATGATTT
GGTGGCGTGCGCAGGATGCAACAAATGCATCAAGCTCAAGGACCAGGCCG
GTGTTGACAAGGCTTGTGCCAAGTACAACGCGTGGGCGGCCAAGCAGAAA
GCTGATGCAGCTGCCCCTACCTTGCAGGCTGCCGTAGAGGAGGAGAGTGT
AGAGGACAACCTAGTGCTGCTACAGCAGAGTCCTACTGCCGACTCTCTGG
CTTCCAACTTGCCCGCGAGTTTGAAGGAAAAATTCTGTAGCCAGTACTGG
TGTCCTTAA back to top
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