jgi.p|Nanoce1779_2|580821, mRNA_2579 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580821
Unique NamemRNA_2579
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1145
Alignment locationscaffold_5:695984..697296 +

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Properties
Property NameValue
TranscriptId580907
TrackFilteredModels2
ProteinId580821
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:695984..697296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580821gene_2579Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580821mRNA_2579-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2579CDS_2579Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2579 ID=mRNA_2579|Name=jgi.p|Nanoce1779_2|580821|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp
TGGGAGGGGCTTGATTCATCATGCCTTTCTGGGGGCAAAACTGGCAGAGG
CTATCTTGATGGGGGATGAGACATTACTGCCCTTCCAGGTACGGGCACCC
CTTGTCAAGCAGAGGGAAAAAAGATTTTGGTGAAGGTATGAGTGGTCGTA
GGAAAATCATGAGAGAAATACAGAATCTTAACCGTGGTAGGAGTGCAAGG
CATTGGCACTGTAAGTAATGCATGTCAGTTCATCGTAAAATAGAAAAAAG
AAAAGCACACAAACGCACACTGCAAGAGGGGAAATCCTTTTTATCCTTCT
CAAAGCCACTCTATGTGTCGTTTTCTCCGTGCTTTTCTAAATCTCTTCCT
ACTGCAAAATTCTTCCAGTCCCACATACATATACATGTATACACACACAT
ATATATATACATATATACATATATATGTGTTATTAATATCAATTTAGGCG
GCGGTTAACCAGCCAATTCTCATATTGTTCCATCACTCTCTCCATACAAC
ATCGGCCACTCTCCTCTCCACTCTCTTCCCTCGCTCTGGCCTTCCTACCA
TGACGCAATTTGACTACAGGCAGAGTTAATTTCCTCTAGCTGCCCGCTAT
TGTTCATGTCAGTGTGCTTTTGAGCATATGTCAGTATACCTTGGCACGCC
CTTTCCCCCTCTCTACCTACCTACATAGCTTGTCCGACCTTGTTCTTGCA
GGAGAGTCTCCATTGATGAGAAAAAGGTTTCAAAATCATCGTCCAACACA
CGAAAATCTCCCAAATCAAGTAAGTCTCCACTTTCGTCCCTCCGTTGCAG
CTTCCCATCAATGATGTAATGTGGGATCCCGTCATAGTAGACCTGGACAC
ATGCACACTCTTTTGTTGCATGTTCTCCTGCGCACTTCTTTTGTGCCTCC
CCTACTTCTTTTTCGGTCAGTTTCCCCTTTTCGGAGGTGGAGGGGGAGGG
AGGCAAGTCGGGGAGAGGGGGGGGAAGGGCAGCGACAGGAGGCGGCGGAG
GAGAAGGAGGGTCGTCGTGTTTGTGGCCTTCTCGACATTCGAGGACACGG
TCGGGCGAGAGGAAGTCGACATGCTGCCCGTGAAGCACGCGTGTAAACAG
TTTCGGTTGCCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGC
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protein sequence of jgi.p|Nanoce1779_2|580821

>mRNA_2579-protein ID=mRNA_2579-protein|Name=jgi.p|Nanoce1779_2|580821|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MHTLLLHVLLRTSFVPPLLLFRSVSPFRRWRGREASRGEGGEGQRQEAAE
EKEGRRVCGLLDIRGHGRARGSRHAAREARV*
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mRNA from alignment at scaffold_5:695984..697296+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2579 ID=mRNA_2579|Name=jgi.p|Nanoce1779_2|580821|organism=Nannochloropsis oceanica|type=mRNA|length=1313bp|location=Sequence derived from alignment at scaffold_5:695984..697296+ (Nannochloropsis oceanica)
TGGGAGGGGCTTGATTCATCATGCCTTTCTGGGGGCAAAACTGGCAGAGG
CTATCTTGATGGGGGATGAGACATTACTGCCCTTCCAGGTACGGGCACCC
CTTGTCAAGCAGAGGGAAAAAAGATTTTGGTGAAGGTATGAGTGGTCGTA
GGAAAATCATGAGAGAAATACAGAATCTTAACCGTGGTAGGAGTGCAAGG
CATTGGCACTGTAAGTAATGCATGTCAGTTCATCGTAAAATAGAAAAAAG
AAAAGCACACAAACGCACACTGCAAGAGGGGAAATCCTTTTTATCCTTCT
CAAAGCCACTCTATGTGTCGTTTTCTCCGTGCTTTTCTAAATCTCTTCCT
ACTGCAAAATTCTTCCAGTCCCACATACATATACATGTATACACACACAT
ATATATATACATATATACATATATATGTGTTATTAATATCAATTTAGGCG
GCGGTTAACCAGCCAATTCTCATATTGTTCCATCACTCTCTCCATACAAC
ATCGGCCACTCTCCTCTCCACTCTCTTCCCTCGCTCTGGCCTTCCTACCA
TGACGCAATTTGACTACAGGCAGAGTTAATTTCCTCTAGCTGCCCGCTAT
TGTTCATGTCAGTGTGCTTTTGAGCATATGTCAGTATACCTTGGCACGCC
CTTTCCCCCTCTCTACCTACCTACATAGCTTGTCCGACCTTGTTCTTGCA
GGAGAGTCTCCACTGTGAGTTTAGGAAAGCGAAGGGGGAAATGGAAAGAG
GGAGGGAGGAGTTGTGAGATGTGATGCAAAAAGTGTCAAGCACGATAAGA
ACATGTAATTCAGAGCACGAGAAACGAAATTTGAGCCGCGCGCATCATCT
CCCCTCCCTTTAAAGACAGAGCAAGCTTACTTGATGAGAAAAAGGTTTCA
AAATCATCGTCCAACACACGAAAATCTCCCAAATCAAGTAAGTCTCCACT
TTCGTCCCTCCGTTGCAGCTTCCCATCAATGATGTAATGTGGGATCCCGT
CATAGTAGACCTGGACACATGCACACTCTTTTGTTGCATGTTCTCCTGCG
CACTTCTTTTGTGCCTCCCCTACTTCTTTTTCGGTCAGTTTCCCCTTTTC
GGAGGTGGAGGGGGAGGGAGGCAAGTCGGGGAGAGGGGGGGGAAGGGCAG
CGACAGGAGGCGGCGGAGGAGAAGGAGGGTCGTCGTGTTTGTGGCCTTCT
CGACATTCGAGGACACGGTCGGGCGAGAGGAAGTCGACATGCTGCCCGTG
AAGCACGCGTGTAAACAGTTTCGGTTGCCCTGCTCCTGCTCCTGCTCCTG
CTCCTGCTCCTGC
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Coding sequence (CDS) from alignment at scaffold_5:695984..697296+

>mRNA_2579 ID=mRNA_2579|Name=jgi.p|Nanoce1779_2|580821|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at scaffold_5:695984..697296+ (Nannochloropsis oceanica)
ATGCACACTCTTTTGTTGCATGTTCTCCTGCGCACTTCTTTTGTGCCTCC
CCTACTTCTTTTTCGGTCAGTTTCCCCTTTTCGGAGGTGGAGGGGGAGGG
AGGCAAGTCGGGGAGAGGGGGGGGAAGGGCAGCGACAGGAGGCGGCGGAG
GAGAAGGAGGGTCGTCGTGTTTGTGGCCTTCTCGACATTCGAGGACACGG
TCGGGCGAGAGGAAGTCGACATGCTGCCCGTGAAGCACGCGTGTAA
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Synonyms
Publications